Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d014512_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:5:51084213:51090634:1 gene:Zm00001d014512 gene_biotype:protein_coding transcript_biotype:protein_coding description:USP39 protein
Sequence	ATGGGCGCAGATGAGCAGCCATCTCCGACGCGGAAACGCGACCGCGAGGAAGGGGAGGAC CTCTCCGACGGGGGCGCCGCCGAGAAGCGGCCGCGCGCCGAGGTCGCGTCCCTGCTGGGG CTGGCCACCTACGAGGACGAGGAGGAAGACGAAGCGGCCAGGGGTCACACGAATGGCCGA CACGCGGTGGAGCCTGAGCTAGAGGACGACGAGGATGATGATGATGAGGACGACGACGTG AGGAGGGCTCCTGAGAGGAGGCCCAGACAGGTAGAGCTGCGCCGGGACTGCCCATACCTC GACACCGTGAACAGACAGGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTG TCAAATTTGAATGTGTATGCGTGCTTGGTCTGTGGAAAATATTTCCAAGGAAGAGGGTTG AAATCTCATGCATATACGCACAGCCTTGAAGCAGGCCATCACGTGTTCATTAATCTTCAA ACTGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGAT ATTCGACATGTTCTGAATCCAAGGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAAT AAGCAGTGGTCTAGAGCACTTGATGGCTCCAATTATCTACCTGGAATGGTGGGTCTTAAC AACATCAAGGAGACTGATTTTGTGAATGTCACAATACAGTCATTAATGAGAGTTACACCT CTGAGAAATTTCTTTCTAATCCCTGAAAACTATCAGCATAGCAAATCACCATTGGTTCAT CGTTTTGGGGAATTGACACGTAAGATTTGGCATGCTAGGAACTTCAAGGGCCAGGTTAGT CCACATGAATTTCTGCAAGCAGTTATGAAGGCCAGCGACAAAAAGTTTCAGATTGGTGTA CAGTCAGATCCAGTGGAATTTATGACATGGCTCTTAAACACACTGCATGCGAAACTAAAA AGTTCAAAGAAGAAAAACAGAAGCATAATACACGATTGTTTTCAGGGAGAACTTGAAGTT GTTAAGGAGGTTCATAGGAAGCATATAATGGAAAAAAGAGAGGATGGCGGTGAGCTGAAT GGTGAGGCAGGTTCAGTGGTGGGAACTGCAGATGGAATTGTTACTGAAACATCCAAGGTC CCATTCCTGATGCTCGGTCTTGACCTGCCACCTCCACCTCTTTTCAAAGACGCCATGGAG AAAAATATCATTCCACAGGTACCATTGTTTAACATACTGAAGAAGTTCGATGGTGAGACA GTTACAGAGGTTGTCCGACCTTCCATTGCCCGAATGAGGTACCGAGTCACTAGACTGCCG AAGTATCTGATCCTTCATATGCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAAC CCTACTCTAGTTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCT AAGCCGAAAGAGAATCATAAGCTACGTTCAAAGTATGACCTCATAGCAAACATTGTCCAT GATGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCC TGGTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGCTCTCTCA GAAACCTACATGCAAATATACGAGCAACACGAATGA

Peptide Sequence

PEP ID	Zm00001d014512_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:5:51084213:51090634:1 gene:Zm00001d014512 transcript:Zm00001d014512_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:USP39 protein
Sequence	MGADEQPSPTRKRDREEGEDLSDGGAAEKRPRAEVASLLGLATYEDEEEDEAARGHTNGR HAVEPELEDDEDDDDEDDDVRRAPERRPRQVELRRDCPYLDTVNRQVLDFDFEKFCSISL SNLNVYACLVCGKYFQGRGLKSHAYTHSLEAGHHVFINLQTEKAYCLPDGYEINDPSLED IRHVLNPRFTKEQVLNLDKNKQWSRALDGSNYLPGMVGLNNIKETDFVNVTIQSLMRVTP LRNFFLIPENYQHSKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASDKKFQIGV QSDPVEFMTWLLNTLHAKLKSSKKKNRSIIHDCFQGELEVVKEVHRKHIMEKREDGGELN GEAGSVVGTADGIVTETSKVPFLMLGLDLPPPPLFKDAMEKNIIPQVPLFNILKKFDGET VTEVVRPSIARMRYRVTRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLP KPKENHKLRSKYDLIANIVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALS ETYMQIYEQHE

Transcript Sequence

Transcript ID	Zm00001d014512_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:51084213:51090634:1 gene:Zm00001d014512 gene_biotype:protein_coding transcript_biotype:protein_coding description:USP39 protein
Sequence	GCGGCGATCTACGCCTCTCCGTCCTCCAAACGAAACCCTAACCCGCGCATCCAACCTCCA TCCATCCTCCGAGCCCCAAACTCCAAACCCTAGACCCCTCCCCCTGCCTTCGCGGCCGAT GGGCGCAGATGAGCAGCCATCTCCGACGCGGAAACGCGACCGCGAGGAAGGGGAGGACCT CTCCGACGGGGGCGCCGCCGAGAAGCGGCCGCGCGCCGAGGTCGCGTCCCTGCTGGGGCT GGCCACCTACGAGGACGAGGAGGAAGACGAAGCGGCCAGGGGTCACACGAATGGCCGACA CGCGGTGGAGCCTGAGCTAGAGGACGACGAGGATGATGATGATGAGGACGACGACGTGAG GAGGGCTCCTGAGAGGAGGCCCAGACAGGTAGAGCTGCGCCGGGACTGCCCATACCTCGA CACCGTGAACAGACAGGTTCTTGATTTTGATTTCGAGAAGTTCTGTTCAATCTCCTTGTC AAATTTGAATGTGTATGCGTGCTTGGTCTGTGGAAAATATTTCCAAGGAAGAGGGTTGAA ATCTCATGCATATACGCACAGCCTTGAAGCAGGCCATCACGTGTTCATTAATCTTCAAAC TGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGATAT TCGACATGTTCTGAATCCAAGGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAA GCAGTGGTCTAGAGCACTTGATGGCTCCAATTATCTACCTGGAATGGTGGGTCTTAACAA CATCAAGGAGACTGATTTTGTGAATGTCACAATACAGTCATTAATGAGAGTTACACCTCT GAGAAATTTCTTTCTAATCCCTGAAAACTATCAGCATAGCAAATCACCATTGGTTCATCG TTTTGGGGAATTGACACGTAAGATTTGGCATGCTAGGAACTTCAAGGGCCAGGTTAGTCC ACATGAATTTCTGCAAGCAGTTATGAAGGCCAGCGACAAAAAGTTTCAGATTGGTGTACA GTCAGATCCAGTGGAATTTATGACATGGCTCTTAAACACACTGCATGCGAAACTAAAAAG TTCAAAGAAGAAAAACAGAAGCATAATACACGATTGTTTTCAGGGAGAACTTGAAGTTGT TAAGGAGGTTCATAGGAAGCATATAATGGAAAAAAGAGAGGATGGCGGTGAGCTGAATGG TGAGGCAGGTTCAGTGGTGGGAACTGCAGATGGAATTGTTACTGAAACATCCAAGGTCCC ATTCCTGATGCTCGGTCTTGACCTGCCACCTCCACCTCTTTTCAAAGACGCCATGGAGAA AAATATCATTCCACAGGTACCATTGTTTAACATACTGAAGAAGTTCGATGGTGAGACAGT TACAGAGGTTGTCCGACCTTCCATTGCCCGAATGAGGTACCGAGTCACTAGACTGCCGAA GTATCTGATCCTTCATATGCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCC TACTCTAGTTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTAA GCCGAAAGAGAATCATAAGCTACGTTCAAAGTATGACCTCATAGCAAACATTGTCCATGA TGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG GTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGCTCTCTCAGA AACCTACATGCAAATATACGAGCAACACGAATGAGTAATGGACAGTGGTCATCCTATGGT CAGTCTGTTTGCTTAACAGAGATCAGAATATCACAAACTAATCCTTATCTTTGGAGCAGC TTTTTTTGGGGCAGAATTTTGTAGTATCTTCACACATGTCCAGACTTAATTTCTTGACAA GCAGAGATCGAGGGAATGTACTTGGGTCATCAAGTCAATGCTATGGAGGCTGAAACATCG TGAATTGTTTTTAGAGCTGCTTTGATAGAGGAACGATTTCCCACATATTTCATGTTTGTA GTGCAGCACTGCAGCCTGTATCTGTTGTGAACCGGTAGAGCAGGGTTCCAGCTGTATGGT TTAGTATTGCTTTTCGAAGCCTTGAGTTTGTTTCTGTACAGGACCGGCAAATCACAGTTT CAAACAATTGCGGCAGGGTGGTTCTGGTCC