Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014456_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:48036890:48043486:1 gene:Zm00001d014456 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamate receptor 3.4
Sequence

ATGGAGAAAAATGTAGTTGCTGTGATTGGCCCACAATCCTCTGGAATAGGCCATGCCATC
TCTCAAGTTGTCAATGAGTTACATGTTCCTCTCCTATCATTTGCGGCGACGGATCCAACT
CTCTCTGCATCAGAGTATCCTTACTTCTTAAGGACAACCACAAGTGATTATTTCCAAATG
AATGCTGTTGCTAGCATTGTTGATTACTATCAATGGAAAAGGGTGACTGCTGTATACATC
GACGACGAGTATGGGCGAGGTGGCGTCTCGGCTCTCGGTGATGCGCTTGCATTGAAGAGG
GCACAAGTTTCATATAAAGCAACTATTCCTCCAAATTCAAACACAGATGTGATCCGTGAT
GTACTGTTTAAAGCAAACATGATGGAATCAAGGGTCATGGTTGTGCATGTCAATCCTGAC
ACGGGTTTGAGGGTATTTTCTGCAGCTAAGAAGCTCCAGATGATGGCCAGTGGCTATGTC
TGGATAGTAACTGATTGGCTAGCTGCTGTCCTAGATTCTTCTGCATCTAGAAATCCTAAA
TATATGAGTAATATTCAGGGAGTAATTGTTTTGCGTCAGCACACTCCTGATTCTGATGCC
AAGAACAAGTTCATATCTAGATGGAACAATGTGGCTCGTAATAGAAGTATGACTCCTGGA
CTGAACTCATACGGTTTCTATGCTTATGATTCAGTTTGGGCTGTTGCTCGTTCTGTGGAT
CAATTTCTCAATGCTGGAAACCAGATCAACTTCTCAACAGATCCAAGGCTGCACGATCCA
AATGGCACCACTTTGCGCCTGTCAACTCTCAAGATATTCGATGGTGGTGACCAGATGCTG
CAGCAGCTTCTCCTCACAAACTTCACAGGTCTAACAGGTGCAGTCAAATTTGATTCAGGT
GGCAATTTGCTACACCCAGCATATGACATCCTCAATGTCGGTCGCTCTGGCACCCACTTG
ATCGGCTATTGGTCCAACTATTCAGGCCTTTCTGTGGCTGCTCCTGAAATTCTGTATCAG
ATGTCACCAAATGCGTCCACAAGTACCCATCAGCTGAACAGTGTGGTATGGCCTGGTGAC
TCCACTGATATACCTAGAGGCTGGGTGTTCCCGAACGATGGCCAGCCTCTAAGAGTTGGG
GTCCCGGTTAAACCAAGCTTCAAGGCATTGGTGTCAGGCAGCACCCCTGATTCTGTGAGG
GGTTACTGCATTGATGTTTTCAAGTCAGCAATTAAACTGCTCCCTTACCCAGTTCCTTAC
CAGTTTATTCCTATTGGGGATGGCACAAAGAACCCTAGTTATGTCAGCATCGTTGGGATG
GTTGCTTCCAATACACTTGATGCAGCTGTAGGCGACTTTGCGATAGTGAGAAATGGAACA
CGGCTTGCAGAGTACACGCAGCCTTACATTGATTCAGGGCTTGTGATAGTGGCGCCGGTG
AAACACATAACCTCAAGCGCTTGGGCTTTCCTTAAACCCTTCACATGGGAGATGTGGTTT
ATCACAGGCGCTCTTTTCATTTTGGTGGGAATTGTGGTGTGGCTACTTGAGCATCGGAGT
AATCCAGAATTTCGAGGCCCTCCATGTAATCAAGTCATAACAATATTCTGGTTCAGCTTC
TCCACAATGTTCTTCTCACACCAGGAGAATACCAGAACCGCGCTCGGGCGTTTCGTGTTG
ATCATATGGATGTTTGTCGTGTTGATCATCACTTCAAGCTACACTGCCAGTTTGACGTCA
ATCCTGACGGTCCAACAGCTCGCGACAGGAATTACAGGCCTTGACAGTCTCATATCAAGC
TCTTTACCTATTGGATACCAGACCGGAAAATTCACCAAGAAATACCTGATGCTAAACCTC
AACGTTCCTGAGTCTCGATTGGTGCAACTGAACACGATCGAGGAATACGCTGATGCCCTT
AACCGTGGACCAAAAAATGGTGGGGTTGCTGCTATTATTGACGAGAAGCCATATATTGAC
ATCTTCCTGTCACACTACTGCAACTTCAAGATTGTTGGACAGCAGTTCACAAGGGAAGGA
TGGGGATTTGTATGTTCGTCGCCTTTCATCTTGTTCTGTGACTTGTTTTTCTTTTAA

Peptide Sequence

PEP ID

Zm00001d014456_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:48036890:48043486:1 gene:Zm00001d014456 transcript:Zm00001d014456_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamate receptor 3.4
Sequence

MEKNVVAVIGPQSSGIGHAISQVVNELHVPLLSFAATDPTLSASEYPYFLRTTTSDYFQM
NAVASIVDYYQWKRVTAVYIDDEYGRGGVSALGDALALKRAQVSYKATIPPNSNTDVIRD
VLFKANMMESRVMVVHVNPDTGLRVFSAAKKLQMMASGYVWIVTDWLAAVLDSSASRNPK
YMSNIQGVIVLRQHTPDSDAKNKFISRWNNVARNRSMTPGLNSYGFYAYDSVWAVARSVD
QFLNAGNQINFSTDPRLHDPNGTTLRLSTLKIFDGGDQMLQQLLLTNFTGLTGAVKFDSG
GNLLHPAYDILNVGRSGTHLIGYWSNYSGLSVAAPEILYQMSPNASTSTHQLNSVVWPGD
STDIPRGWVFPNDGQPLRVGVPVKPSFKALVSGSTPDSVRGYCIDVFKSAIKLLPYPVPY
QFIPIGDGTKNPSYVSIVGMVASNTLDAAVGDFAIVRNGTRLAEYTQPYIDSGLVIVAPV
KHITSSAWAFLKPFTWEMWFITGALFILVGIVVWLLEHRSNPEFRGPPCNQVITIFWFSF
STMFFSHQENTRTALGRFVLIIWMFVVLIITSSYTASLTSILTVQQLATGITGLDSLISS
SLPIGYQTGKFTKKYLMLNLNVPESRLVQLNTIEEYADALNRGPKNGGVAAIIDEKPYID
IFLSHYCNFKIVGQQFTREGWGFVCSSPFILFCDLFFF

Transcript Sequence

Transcript ID

Zm00001d014456_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:48036890:48043486:1 gene:Zm00001d014456 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamate receptor 3.4
Sequence

ACAAACATTTCTTCTGCAGCGCCGTCGCCGCTCGGCTCGTCTCCGCCTGCGGCAGCTCTC
CTGCACTGCAACCACCGCCAAAGCCGTGGTCGCTTCCCGACGTTCGAGCTCGCGCCATGG
CCGCTCCTCGACGCCCGCCGCCGCGTCGTCACTGCCATCTGCACTCCCTGCTGCCACCGC
CGCGTCGTCGCCGCCCTCCCCGCCGCCTGCGCGTTCCACACCGGCGCCGCATGCACCCTC
TCCATGTCCACTGCCATGTTTAACCGCTTTGGAGCTAATGGAGAAAAATGTAGTTGCTGT
GATTGGCCCACAATCCTCTGGAATAGGCCATGCCATCTCTCAAGTTGTCAATGAGTTACA
TGTTCCTCTCCTATCATTTGCGGCGACGGATCCAACTCTCTCTGCATCAGAGTATCCTTA
CTTCTTAAGGACAACCACAAGTGATTATTTCCAAATGAATGCTGTTGCTAGCATTGTTGA
TTACTATCAATGGAAAAGGGTGACTGCTGTATACATCGACGACGAGTATGGGCGAGGTGG
CGTCTCGGCTCTCGGTGATGCGCTTGCATTGAAGAGGGCACAAGTTTCATATAAAGCAAC
TATTCCTCCAAATTCAAACACAGATGTGATCCGTGATGTACTGTTTAAAGCAAACATGAT
GGAATCAAGGGTCATGGTTGTGCATGTCAATCCTGACACGGGTTTGAGGGTATTTTCTGC
AGCTAAGAAGCTCCAGATGATGGCCAGTGGCTATGTCTGGATAGTAACTGATTGGCTAGC
TGCTGTCCTAGATTCTTCTGCATCTAGAAATCCTAAATATATGAGTAATATTCAGGGAGT
AATTGTTTTGCGTCAGCACACTCCTGATTCTGATGCCAAGAACAAGTTCATATCTAGATG
GAACAATGTGGCTCGTAATAGAAGTATGACTCCTGGACTGAACTCATACGGTTTCTATGC
TTATGATTCAGTTTGGGCTGTTGCTCGTTCTGTGGATCAATTTCTCAATGCTGGAAACCA
GATCAACTTCTCAACAGATCCAAGGCTGCACGATCCAAATGGCACCACTTTGCGCCTGTC
AACTCTCAAGATATTCGATGGTGGTGACCAGATGCTGCAGCAGCTTCTCCTCACAAACTT
CACAGGTCTAACAGGTGCAGTCAAATTTGATTCAGGTGGCAATTTGCTACACCCAGCATA
TGACATCCTCAATGTCGGTCGCTCTGGCACCCACTTGATCGGCTATTGGTCCAACTATTC
AGGCCTTTCTGTGGCTGCTCCTGAAATTCTGTATCAGATGTCACCAAATGCGTCCACAAG
TACCCATCAGCTGAACAGTGTGGTATGGCCTGGTGACTCCACTGATATACCTAGAGGCTG
GGTGTTCCCGAACGATGGCCAGCCTCTAAGAGTTGGGGTCCCGGTTAAACCAAGCTTCAA
GGCATTGGTGTCAGGCAGCACCCCTGATTCTGTGAGGGGTTACTGCATTGATGTTTTCAA
GTCAGCAATTAAACTGCTCCCTTACCCAGTTCCTTACCAGTTTATTCCTATTGGGGATGG
CACAAAGAACCCTAGTTATGTCAGCATCGTTGGGATGGTTGCTTCCAATACACTTGATGC
AGCTGTAGGCGACTTTGCGATAGTGAGAAATGGAACACGGCTTGCAGAGTACACGCAGCC
TTACATTGATTCAGGGCTTGTGATAGTGGCGCCGGTGAAACACATAACCTCAAGCGCTTG
GGCTTTCCTTAAACCCTTCACATGGGAGATGTGGTTTATCACAGGCGCTCTTTTCATTTT
GGTGGGAATTGTGGTGTGGCTACTTGAGCATCGGAGTAATCCAGAATTTCGAGGCCCTCC
ATGTAATCAAGTCATAACAATATTCTGGTTCAGCTTCTCCACAATGTTCTTCTCACACCA
GGAGAATACCAGAACCGCGCTCGGGCGTTTCGTGTTGATCATATGGATGTTTGTCGTGTT
GATCATCACTTCAAGCTACACTGCCAGTTTGACGTCAATCCTGACGGTCCAACAGCTCGC
GACAGGAATTACAGGCCTTGACAGTCTCATATCAAGCTCTTTACCTATTGGATACCAGAC
CGGAAAATTCACCAAGAAATACCTGATGCTAAACCTCAACGTTCCTGAGTCTCGATTGGT
GCAACTGAACACGATCGAGGAATACGCTGATGCCCTTAACCGTGGACCAAAAAATGGTGG
GGTTGCTGCTATTATTGACGAGAAGCCATATATTGACATCTTCCTGTCACACTACTGCAA
CTTCAAGATTGTTGGACAGCAGTTCACAAGGGAAGGATGGGGATTTGTATGTTCGTCGCC
TTTCATCTTGTTCTGTGACTTGTTTTTCTTTTAAAAAAAATTGTTCTGTGCCTTCATTCT
CCTTCATCTTGTCCTTTTTTTTTTTTGCAGGCATTCCAGAAAGACTCCCCCCTTGCTGCA
GATATGTCGACCGCCATCCTTCAGCTTTCAGAGAGTGGCCAGCTTCAGAGCATCCATGAC
GAGTGGTTCACACAGCCGAGCTGCGCCACCAATGATGAGAGCAATGTGGGTGCAACCAGG
CTTGGCCTCGGAAGCTTCTGGGGGCTTTTCCTCATCTGTGCCCTGATCTGTCTCTTCGCT
GTGGTGGTGTTCTTCATACGAGTCTGCTGGCAGTACAAGCAGTACTCCAATTCTGAAGAT
GCTGACGAGTCCAATGAAGCTGGCGCTGATGGTGCTGGCAAAAGACAGCGGAAGTTGTCA
CGCCTTGGCAGCTTCCAGGAGATTCTAAAGTTTTTCGACATGAAGGAGGAGGAAGTCATG
AAGAGCTCGATGAAACGACGGCCAGGTGAGAAAGATAACCATGCTGCTGGATTCTAGATG
CGCAATCAGTGGCTTCAGCATAGAACATGCATCCCCGATCGACTTCAACGCTATTTTTTA
TACGACGATCCGAGAATCTGTCTTTTATCACGGTTATTAGAATTTTGCAAAGATATACAT
GCTTGGGAAAGGCTACTCATGACCGCTATTTTTTATGATTACCTGAATTTAATTATGAAG
AGTTT