Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014449_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:5:47751959:47756916:-1 gene:Zm00001d014449 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chromo domain-containing protein LHP1
Sequence

ATGCATAGCATACATGCCTCAGAAGTGAAGAAACTGCCCTGCAGGACAAGTAGTAGGAGA
GCAAATAATAATAGTAACAAGACCTCACCTGGGGGCCTTGGCGCAGCAGTGAATTTGCTT
GGGCAAAGAATAGTACAGGAGGGTAGTTCTGGTGTGGTCTCAGTTGGGTTTCCATCTCAA
GAGGCTCCCTTATCTGTTAGCTTGACTGATCAACAAGATGCGCAGCACCCTGCTAATGGT
TCATTGAAGATGGACAATGAAATACGAGCAATCACACCTCAGGGTGGACAGGTGACAGGT
GCTAAGAAGCGCAAGTCTGGATGTGTAAGAAGGTTTAAGCAGGATGAAGTAACACATGAG
CAAGGAGATATCCGTGATCGAACAAGTGACAAGCCAGGCAACGAGACTGTTGATTCCACA
GAAGGAGATCCTGGTGATAAGAACAAAGGGGAGGACTCTGGTAACCAAATTCATATGCCT
AAGATCATTAAGATCATTAAGCCAGTGCGCTATTTTGCCACAGTTATGGATGGTGTGCAG
CAAGTTGCAATAACATTCAAGGCTCTCAGGTCTGACGGGGAAATGGTATTCGTGGACGAT
AAGCAGTTGAAAGCTAAGGAGCCCCTGGTGCTTATTGATTACTATGAGCAACACCTTCGC
TACAACCCCACCTCGTGA

Peptide Sequence

PEP ID

Zm00001d014449_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:5:47751959:47756916:-1 gene:Zm00001d014449 transcript:Zm00001d014449_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chromo domain-containing protein LHP1
Sequence

MHSIHASEVKKLPCRTSSRRANNNSNKTSPGGLGAAVNLLGQRIVQEGSSGVVSVGFPSQ
EAPLSVSLTDQQDAQHPANGSLKMDNEIRAITPQGGQVTGAKKRKSGCVRRFKQDEVTHE
QGDIRDRTSDKPGNETVDSTEGDPGDKNKGEDSGNQIHMPKIIKIIKPVRYFATVMDGVQ
QVAITFKALRSDGEMVFVDDKQLKAKEPLVLIDYYEQHLRYNPTS

Transcript Sequence

Transcript ID

Zm00001d014449_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:47751959:47756916:-1 gene:Zm00001d014449 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chromo domain-containing protein LHP1
Sequence

ACTGCGCCCCTGAACTGAACGAGCCTTGTTCCTTCCGAATCCCTCCGAGAAAAGGCGGCT
CCAAAAACCAGATCTCCTCAGCAAAATCTGTACAAGATCCGCCCTTGATTTGGATAACAC
GAGCGAACGTGTGGTGGGCCGTCGAGTGAAACAAGATTCGCCATGCGGCGGAACAGGAAG
GATTCCGGCTATCCGACGGCGGCTCCAGGGGAGGAGGATGAGGCGGAGGAACTGACTGAG
GAGGGCGACGAGGAAGAGGAGGAACAGACGGAGGAGGGATGTGGTGAGGAGGATGAAGTT
GAAGCGGAGACGCCGGCGCAGGAAGCTGTGGAGCCGCCGAAGCTGGCTGAGGGCTACTTC
GAGATCGAGGCCATCCGCCGCCGCCGCCTCCGCAAGGGCCAGCTCCAGTACCTCGTCAAG
TGGTCGGTGACGGTCCTCGCTCTCCTAAATCCCAATATTTTTTCGTTTTTGTAATTTTCC
GGTAGGCTAGCGCTTCTTCCTCCTTGATTCTTGCTTGGACAGTAGTCCAGATTCTTTTGC
AGTTAGTACCGTTTGGGCGTGGTTTGGTTAGTACACCACATTTGCTTGTAGTTGGATGGG
CTGGTGACTCTGCACAAGTAGGTTTAGTCGTGGTTCGTGGAATGCGTTTTCCTTGTCTAT
TCTTTGATTTGCTGCTGGATGTTTTTATTAAAATATCAGAATGACTCGTGGACGTTTCTA
GTATGATGTAGATGCTATGTCATGAACTCCACAATCCACATTCAAGAATGTGTTTTTTGG
CAAAGCTGCAGTGCTGTACTGAAGTAATTTCTATTCGCACTATGATTTTGAACACAACTA
TTCCATTCTCTTGTTAAATAGAGTGCGTGTTGCAGCATTTGCAATTTGGTGGCCAACTTT
GGTAGGCATTGAGTCATGTATTCGTCTTACTTTATGTTTGTTTCATTAAATAGATTCATC
GTATAATTTGTGGTTGCTCTTTTTTTTTCTTTGATGGAGAACTATGGGTTTGAAAGCTGA
ATGTTGTTTATAGCTTGTTTACTGCATTTATGTTACTGCTGATACTGTATTCCTATCAAT
TTGATGTGATTTATAAGGCGTGGGTGGCCAGAGAGTGCTAACACATGGGAACCCCTTGAA
AACCTGAAGGCCTGTTCTGACATTGTTGATGCTTTCAATAAGCGGTCAAGGTCGCCCAGA
TCCTGTGGAAAGCGAAAGCGCAAGACTCCAACAACTCCAACATCCGATCCTAACCCTTCT
CGTGGCAAACGTGGTCGACCACCTCGGTCGGAGGCCCGGAGCATGCATAGCATACATGCC
TCAGAAGTGAAGAAACTGCCCTGCAGGACAAGTAGTAGGAGAGCAAATAATAATAGTAAC
AAGACCTCACCTGGGGGCCTTGGCGCAGCAGTGAATTTGCTTGGGCAAAGAATAGTACAG
GAGGGTAGTTCTGGTGTGGTCTCAGTTGGGTTTCCATCTCAAGAGGCTCCCTTATCTGTT
AGCTTGACTGATCAACAAGATGCGCAGCACCCTGCTAATGGTTCATTGAAGATGGACAAT
GAAATACGAGCAATCACACCTCAGGGTGGACAGGTGACAGGTGCTAAGAAGCGCAAGTCT
GGATGTGTAAGAAGGTTTAAGCAGGATGAAGTAACACATGAGCAAGGAGATATCCGTGAT
CGAACAAGTGACAAGCCAGGCAACGAGACTGTTGATTCCACAGAAGGAGATCCTGGTGAT
AAGAACAAAGGGGAGGACTCTGGTAACCAAATTCATATGCCTAAGATCATTAAGATCATT
AAGCCAGTGCGCTATTTTGCCACAGTTATGGATGGTGTGCAGCAAGTTGCAATAACATTC
AAGGCTCTCAGGTCTGACGGGGAAATGGTATTCGTGGACGATAAGCAGTTGAAAGCTAAG
GAGCCCCTGGTGCTTATTGATTACTATGAGCAACACCTTCGCTACAACCCCACCTCGTGA
TAAGGATGCATTGACGCTGCTGGGTTTCAGTTGCATGTGCTGCACCTATGTTTGGAACAA
ATGGAAATGTATTTAAATGTAGCATTTTTTGTGCTAGATGCATTTGTAGTATTATTTGAG
TAAGTAGATAATTAGTAAGTAGCCAATGCTGAGTGCAAGTGAAACATGATAGCATGGTTT
GTCAAACTAACTGCTCGATATTGTTACTGTTTTCAAATTGTCTTATTAATCGTGATAATC
ATGATTAATCGT