Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d014422_T027
CDS Infomation	cds chromosome:B73_RefGen_v4:5:45958668:45962739:1 gene:Zm00001d014422 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 16 description:Lysine-specific demethylase REF6
Sequence	ATGCGTTTGAGTGCTCAGAATGAAGAGGGCGGCAATCCTGCGTTGGCTGCGAGAAGCGGT GGTGATGCCTTGCGGAGCCCCACTAACTGCAGGGTCAGATTGCATCCCGACAACAATACA GGAGGTTTACCTGGAGATGTCCAGGGCAAGAATCCTTTTGCAAAGCGCAAGGTGGAGAAG TTTGATATGTCCAACCTTGAGTGGATAAACAAGATACCAGAGTGCCCTGTGTATTGTCCC ACCAAGGTGGAATTCGAGGATCCCATTGCTTATATACAAATGATTTCACCCGAGGCTGCT AAATACGGTATTTGTAAAATCGTCTCTCCTGTATGTGCGTCTGTTCCTGCCGGTGTTGTG CTGATGAAGGAACAGCCCAGCTTTAAGTTCATGACTAGAGTTCAGCCCCTTCGTCTTGCT GAATGGGCTGAGGATGATACGGTCACTTTCTTCATGAGTGGAAGAAAGTACACCTTCCGG GACTACGAGAAAATGGCAAACAAAGTGTTCTCTAAGAGATATTCCAGCTCTAGTTGTCTT CCAGGTAGGTATGTGGAGGAGGAGTTCTGGCGTGAAATTGCTTTTGGCAAAATGGATTTC GTAGAATATGCTTGTGATGTTGATGGGAGTGCCTTCTCTTCTTCTCCCCATGATCAACTT GGGAAAAGCAACTGGAACCTCAAGAATTTTTCACGGCTCCCCGGTTCAGTTCTAAGACTT CTTCAGACACCAATTCCAGGAGTGACAGATCCAATGCTTTATATTGGGATGCTCTTCAGC ATGTTTGCGTGGCATGTGGAAGATCATTATTTGTACAGCATCAATTACCATCACTGTGGG GCATCTAAGACATGGTATGGGATACCAGGCGATGCGGCTCCTGGGTTTGAAAGGGTTGCA AGCCAATACGTATATAACAAGGACATTTTGATTGGTGATGGAGAGGATGCAGCGTTTGAT GTTCTACTGGGCAAGACGACAATGTTCCCTCCAAATGTCTTGCTAGATCACAATGTTCCT GTCTATAAAGCTGTACAAAGACCTGGAGAGTTTGTTATAACGTTTCCTCGTTCTTACCAC GCAGGCTTCAGTCATGGCTTCAATTGTGGAGAGGCTGTTAATTTTGCTGTTGGCGATTGG TTCCCTCTTGGTTCTTTGGCTAGCAAGCGCTACGCGCTTCTGAACAGAACTCCATTGCTT GCACATGAGGAGCTACTTTGTCGTTCTGCTATGCTTCTGTCCCAAAAGCTGTTAAACTGT GACCCAAGATCCTTGGACAAGTTGGAACATCCATGTTCCCAGTATTCTGTGAAATCCTGC TTTGTGCGGTTGATAAAATTCCAGCGACGTGCACGTGACCTACTTGCTAAAATGGGTTCT GAAATATGCTATAAGCCAAAGACATCTCCAAATCTATCCTGTAGCATTTGCCGGCGTGGT TGCTATATCACACATGTGTTGTGTGGATGTAACTTTGATCCTGTCTGCCTACATCATGAA CAAGAACTGCGGAGCTGCCCTTGTAAGTCCAGTCGTGTTGTCTATGTTAGAGAAGACATA CTGGAGCTAGAGGCTCTATCAAGAAAATTTGAGCATGATGTCTACTTGTATAAGGAAAGA AGTTCCATTAGATCATGTAAGGAGGCTGAGATCTCTGATGCTAATGTTGAACACGTCCCA AATCTTGGTATTACTCTGGATTTTGCTAATAGTAAAGCTGGTAGCTCTGGCTTTATAACT GTCGATGGAGGAAACAGTTCTTCTGCAGTATCAATTTTGACATCTTCTGCGCATCATGAG GCACTCATGCATTCAGAAGCAAGGGTTCATGCAACACAAACTGACCAGATTTATTCCACT GCCAAGCAGGCAATAAATACATCAGTGACCAAAGGAACTTGCACTACAGATGAGAGTTCA TCCGGCATGGATTGTGCTTGTAATGAACATGGTTCATGTAATGCTTCAGTCATGGAATGC AGTGATGATTCCGGTTCAGAGAATGAAATTTTCCGAGTCAAGCGCAGGTCCACCTTATTT GACAAACCTACTTCTGAAACAAAGACATCAACCTTGTCTGAACAGCAGGTTCTGAGGCGG CTGAAGAAGGTACGTCCTGGAGTACAGCAGGTCAGTAAGCGTCCAGAAGAATCTGGTAAT GGTTCAGTTCGCTCTACCCATATGAGCCCGAGCTCAAATCATGCCTCTTCGGATGATGAA ATAGACATGGCTCCCCTATTCTTGAGGATAAAGCGGCGGCAGTTGGAAAACCAAGATGTT ACAAGTCGTGGCGCGAGATCACAGTCATACCCATCTTCCAGTGGTTCTCGAGAAGAGTTT GTGGAAAGAAGTAGAGATGCTGCAGCAGAGCTCCGTCCAAAACGAGTGAAAATCCGGCTA CCTTCTAGTGCCAGTAGGCAGATTGAGCAGCAGCGCAGTTCGGGGCAGCGATTTGCAAGG GAGGACAAGTTGCCGCTTGCATTTTAG

Peptide Sequence

PEP ID	Zm00001d014422_P027
PEP Infomation	pep chromosome:B73_RefGen_v4:5:45958668:45962739:1 gene:Zm00001d014422 transcript:Zm00001d014422_T027 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 16 description:Lysine-specific demethylase REF6
Sequence	MRLSAQNEEGGNPALAARSGGDALRSPTNCRVRLHPDNNTGGLPGDVQGKNPFAKRKVEK FDMSNLEWINKIPECPVYCPTKVEFEDPIAYIQMISPEAAKYGICKIVSPVCASVPAGVV LMKEQPSFKFMTRVQPLRLAEWAEDDTVTFFMSGRKYTFRDYEKMANKVFSKRYSSSSCL PGRYVEEEFWREIAFGKMDFVEYACDVDGSAFSSSPHDQLGKSNWNLKNFSRLPGSVLRL LQTPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGDAAPGFERVA SQYVYNKDILIGDGEDAAFDVLLGKTTMFPPNVLLDHNVPVYKAVQRPGEFVITFPRSYH AGFSHGFNCGEAVNFAVGDWFPLGSLASKRYALLNRTPLLAHEELLCRSAMLLSQKLLNC DPRSLDKLEHPCSQYSVKSCFVRLIKFQRRARDLLAKMGSEICYKPKTSPNLSCSICRRG CYITHVLCGCNFDPVCLHHEQELRSCPCKSSRVVYVREDILELEALSRKFEHDVYLYKER SSIRSCKEAEISDANVEHVPNLGITLDFANSKAGSSGFITVDGGNSSSAVSILTSSAHHE ALMHSEARVHATQTDQIYSTAKQAINTSVTKGTCTTDESSSGMDCACNEHGSCNASVMEC SDDSGSENEIFRVKRRSTLFDKPTSETKTSTLSEQQVLRRLKKVRPGVQQVSKRPEESGN GSVRSTHMSPSSNHASSDDEIDMAPLFLRIKRRQLENQDVTSRGARSQSYPSSSGSREEF VERSRDAAAELRPKRVKIRLPSSASRQIEQQRSSGQRFAREDKLPLAF

Transcript Sequence

Transcript ID	Zm00001d014422_T027
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:45958668:45962739:1 gene:Zm00001d014422 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:JUMONJI-transcription factor 16 description:Lysine-specific demethylase REF6
Sequence	GAGGAGGCTCGAGAGAATGCGTTTGAGTGCTCAGAATGAAGAGGGCGGCAATCCTGCGTT GGCTGCGAGAAGCGGTGGTGATGCCTTGCGGAGCCCCACTAACTGCAGGGTCAGATTGCA TCCCGACAACAATACAGGAGGTTTACCTGGAGATGTCCAGGGCAAGAATCCTTTTGCAAA GCGCAAGGTGGAGAAGTTTGATATGTCCAACCTTGAGTGGATAAACAAGATACCAGAGTG CCCTGTGTATTGTCCCACCAAGGTGGAATTCGAGGATCCCATTGCTTATATACAAATGAT TTCACCCGAGGCTGCTAAATACGGTATTTGTAAAATCGTCTCTCCTGTATGTGCGTCTGT TCCTGCCGGTGTTGTGCTGATGAAGGAACAGCCCAGCTTTAAGTTCATGACTAGAGTTCA GCCCCTTCGTCTTGCTGAATGGGCTGAGGATGATACGGTCACTTTCTTCATGAGTGGAAG AAAGTACACCTTCCGGGACTACGAGAAAATGGCAAACAAAGTGTTCTCTAAGAGATATTC CAGCTCTAGTTGTCTTCCAGGTAGGTATGTGGAGGAGGAGTTCTGGCGTGAAATTGCTTT TGGCAAAATGGATTTCGTAGAATATGCTTGTGATGTTGATGGGAGTGCCTTCTCTTCTTC TCCCCATGATCAACTTGGGAAAAGCAACTGGAACCTCAAGAATTTTTCACGGCTCCCCGG TTCAGTTCTAAGACTTCTTCAGACACCAATTCCAGGAGTGACAGATCCAATGCTTTATAT TGGGATGCTCTTCAGCATGTTTGCGTGGCATGTGGAAGATCATTATTTGTACAGCATCAA TTACCATCACTGTGGGGCATCTAAGACATGGTATGGGATACCAGGCGATGCGGCTCCTGG GTTTGAAAGGGTTGCAAGCCAATACGTATATAACAAGGACATTTTGATTGGTGATGGAGA GGATGCAGCGTTTGATGTTCTACTGGGCAAGACGACAATGTTCCCTCCAAATGTCTTGCT AGATCACAATGTTCCTGTCTATAAAGCTGTACAAAGACCTGGAGAGTTTGTTATAACGTT TCCTCGTTCTTACCACGCAGGCTTCAGTCATGGCTTCAATTGTGGAGAGGCTGTTAATTT TGCTGTTGGCGATTGGTTCCCTCTTGGTTCTTTGGCTAGCAAGCGCTACGCGCTTCTGAA CAGAACTCCATTGCTTGCACATGAGGAGCTACTTTGTCGTTCTGCTATGCTTCTGTCCCA AAAGCTGTTAAACTGTGACCCAAGATCCTTGGACAAGTTGGAACATCCATGTTCCCAGTA TTCTGTGAAATCCTGCTTTGTGCGGTTGATAAAATTCCAGCGACGTGCACGTGACCTACT TGCTAAAATGGGTTCTGAAATATGCTATAAGCCAAAGACATCTCCAAATCTATCCTGTAG CATTTGCCGGCGTGGTTGCTATATCACACATGTGTTGTGTGGATGTAACTTTGATCCTGT CTGCCTACATCATGAACAAGAACTGCGGAGCTGCCCTTGTAAGTCCAGTCGTGTTGTCTA TGTTAGAGAAGACATACTGGAGCTAGAGGCTCTATCAAGAAAATTTGAGCATGATGTCTA CTTGTATAAGGAAAGAAGTTCCATTAGATCATGTAAGGAGGCTGAGATCTCTGATGCTAA TGTTGAACACGTCCCAAATCTTGGTATTACTCTGGATTTTGCTAATAGTAAAGCTGGTAG CTCTGGCTTTATAACTGTCGATGGAGGAAACAGTTCTTCTGCAGTATCAATTTTGACATC TTCTGCGCATCATGAGGCACTCATGCATTCAGAAGCAAGGGTTCATGCAACACAAACTGA CCAGATTTATTCCACTGCCAAGCAGGCAATAAATACATCAGTGACCAAAGGAACTTGCAC TACAGATGAGAGTTCATCCGGCATGGATTGTGCTTGTAATGAACATGGTTCATGTAATGC TTCAGTCATGGAATGCAGTGATGATTCCGGTTCAGAGAATGAAATTTTCCGAGTCAAGCG CAGGTCCACCTTATTTGACAAACCTACTTCTGAAACAAAGACATCAACCTTGTCTGAACA GCAGGTTCTGAGGCGGCTGAAGAAGGTACGTCCTGGAGTACAGCAGGTCAGTAAGCGTCC AGAAGAATCTGGTAATGGTTCAGTTCGCTCTACCCATATGAGCCCGAGCTCAAATCATGC CTCTTCGGATGATGAAATAGACATGGCTCCCCTATTCTTGAGGATAAAGCGGCGGCAGTT GGAAAACCAAGATGTTACAAGTCGTGGCGCGAGATCACAGTCATACCCATCTTCCAGTGG TTCTCGAGAAGAGTTTGTGGAAAGAAGTAGAGATGCTGCAGCAGAGCTCCGTCCAAAACG AGTGAAAATCCGGCTACCTTCTAGTGCCAGTAGGCAGATTGAGCAGCAGCGCAGTTCGGG GCAGCGATTTGCAAGGGAGGACAAGTTGCCGCTTGCATTTTAGGGAATCACAGGTACTAA CCTCAGGGCCTCCAATTTGAGGCCTCTGGGGGCACGCTTAGGAGACACACACGTGACAAT ATTCTCGTTGCTCGAGGTTCTGTGTCACTGCCGGTGGCTCTTTGATGCCTGGTTATCAGT GACAGAAATTGAGGAGAACCTCGCTACTTCGATTTCTCTGCAAGTGTTTAGAGCATGTAG CTAGCTTAGCTGTATATCTCTCACTGTACCTACGGTCTTTCCTATTTTTTTTGTAATTTC CTGTAAACAGGCATAGCTGCTACAGTATGGCTAACTCTCTATTCTTTTGTTGGTTTAGCC TGGCGCTGCTTAGCATTTTCAATTAAATCGAGATTCGTT