Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014382_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:5:43775353:43779804:-1 gene:Zm00001d014382 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rab geranylgeranyl transferase like protein

Sequence

ATGCACGGCCGCCCGCGGCGACCGGCCAAGCCCGAGGACGAGGAGGCGGCGTCAGCGAAA
GCCGCCAAGCTTCGGGACCTCCAGGCCCAGGTCCTGCACAATCACCATGGCCGCACGTAC
ACAAAGGAGGCAATTGGGCTGAGCTTCAAGCTGCTCGAGATAAATCCAGAGGCCTACACC
GCATGGAACTACCGGAAGCTTGCGTTTCAGCACAATGTCAAGGAGCTTTCTGATCCGGAG
GCCATCAAGTCTGCTGTTGATGATGAGCTGAGAGTGGTTGAGGTTGCTTTAAGGCAAAAC
CCAAAATCCTATGGAGCTTGGTATCACCGTAAGTGGTTGCTATGCCAAAAGCTAGCGCCC
GTGGATTTCAAACGTGAGTTTGGCCTCTTGGATAAACTGTTGAAGGTGGACGCCAGGAAT
TTTCATGGATGGAACTACAGAAGGTTCCTTGCAAGATTCATGGGTGTGTCAGATGAGGAG
GAGCTAAAGTATACTATGGATAAAATCAGCGACAACTTCAGTAATTACTCAGCATGGCAT
AATCGTAGTATACTTCTGTCCAACCTACTGATCCAGCAGAGCAAAGGTTTTGAGTCAAAG
CAGAAGATTTTTTCCGAGGAGTTTGAACTTGTTACTCAAGCTCTTTTTACAGATCCAAGT
GACCAAAGTGGATGGTTCTATCACCTTTGGCTTTTAGCTCAAACGTCTTGTCCAGATAAC
CCCCAGCTGATTGCTTCATGGCCTTCTAATGCTGCAAAGCTCAGTTCCTCTTTGATCAAG
GAAAAAGCTGAGCAGCACAGACAGTCATCCATCTTGTCAAGGACTGTACCCATTGTTCTT
TATTTTAATGAGCCTGTCAAAGGATTAAATCAATCAAGTGTTAACTTAAAGTCTGATTTG
GAGTTCAGTAAGGATATTATATGGAGGCCCCTCACAATGGCAGACTCTGGGTATTCTAAC
TGTTGGGCCACAGATCTCCAGATTATAAATGAATGTAGCAGTTTGCAGGAATATTCTGTT
GAAGTGAGCATACCCTGCTCGAATGGCATTGTATCTAGAAGTGGCTCTAACTACAATTGT
CCTGTGCATTTTACATTTGGCATTGAATTGATCAGCAACGATCCAGTACAGGGTTTAGAT
ATGTTTGATAAGCCAGTTGCCTGGAATTGCTCAGAATCATTCCAGCCTCATGGGAACCGT
GATCCTATCCCTTTTGATCTGCTAAAGATTACTAGTGCCTTGATCGAGCATGACTCAAAT
TGGCATTTTGAAAGACTATCTGAGGAAATAGATCTTTTCAGAGAGTTACCTGATGACAAC
AGCAAGTTTGGGAAGTTGACATTAGCCCGGTTATTGCTTGCTTGTTCTGCTATAAAATCT
CGTGGAAGATCTCTAATTGAAAGGAAGGGATACTGTGAAGAGGCACTGGGGCTCTTCACT
GACTTGATTCACCTGGATCCATCTCATAAGCAGTACTATGAGGATGAACGGAGCTTAGTC
CTGATGGATAAATTAACATGTGACATGGAGACTTTCATGAAGCACTGTTCAGTTCAGGTT
CAACCAAATTCAGCTCCCCTGAATCATGTGCAGCTTTGCAGATTATCTCTAACATGCATT
GGATTTGCTGAACGCCTGTTGTGGGTTCAAATGCTGGACCTAAGCCATAATAGTCTGAGA
TCAGTCGAAGGATTGGAGGCTTTGCAGCACCTTGTGTTCTTGAACATCAGCAACAACCAG
ATCAGTGGTTTCACAGCACTTGAATCCCTTACGAAGATAATCTCATTGAAAGTTCTGGAT
TTATCTTTCAACAAGATTGGAGCTCACTCAATTGACACAACACGGTATATCTGCTCGTCT
CCATTCTCACACAAAATGGAAGCAAGTGAAGCTTTTGAAGCGTACCAGAAGGTAAATATC
AACGTGGAGGAATACTGGGATGCCATACTGTTTTTCAGATCTCTGAAGTTGGCACAGCTT
GATATAAAAGGAAATGCAGTTGCAAGCAAGGAGAACTTCAGAACTATTGTCATGATGCTC
ATTCCTTGTCTAAAATGGTTTGATGGTGAAGATGTCAATTAA

Peptide Sequence

PEP ID

Zm00001d014382_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:5:43775353:43779804:-1 gene:Zm00001d014382 transcript:Zm00001d014382_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rab geranylgeranyl transferase like protein

Sequence

MHGRPRRPAKPEDEEAASAKAAKLRDLQAQVLHNHHGRTYTKEAIGLSFKLLEINPEAYT
AWNYRKLAFQHNVKELSDPEAIKSAVDDELRVVEVALRQNPKSYGAWYHRKWLLCQKLAP
VDFKREFGLLDKLLKVDARNFHGWNYRRFLARFMGVSDEEELKYTMDKISDNFSNYSAWH
NRSILLSNLLIQQSKGFESKQKIFSEEFELVTQALFTDPSDQSGWFYHLWLLAQTSCPDN
PQLIASWPSNAAKLSSSLIKEKAEQHRQSSILSRTVPIVLYFNEPVKGLNQSSVNLKSDL
EFSKDIIWRPLTMADSGYSNCWATDLQIINECSSLQEYSVEVSIPCSNGIVSRSGSNYNC
PVHFTFGIELISNDPVQGLDMFDKPVAWNCSESFQPHGNRDPIPFDLLKITSALIEHDSN
WHFERLSEEIDLFRELPDDNSKFGKLTLARLLLACSAIKSRGRSLIERKGYCEEALGLFT
DLIHLDPSHKQYYEDERSLVLMDKLTCDMETFMKHCSVQVQPNSAPLNHVQLCRLSLTCI
GFAERLLWVQMLDLSHNSLRSVEGLEALQHLVFLNISNNQISGFTALESLTKIISLKVLD
LSFNKIGAHSIDTTRYICSSPFSHKMEASEAFEAYQKVNINVEEYWDAILFFRSLKLAQL
DIKGNAVASKENFRTIVMMLIPCLKWFDGEDVN

Transcript Sequence

Transcript ID

Zm00001d014382_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:43775353:43779804:-1 gene:Zm00001d014382 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rab geranylgeranyl transferase like protein

Sequence

AACTATTACTAGTAGATTATTCAAACACCCGTCTAGTTCTACTTGTTGGAAGGGTGCCGC
TCTCCACGAGATCCAAACCCCCGCACCCGCGGCGCCGGCGACGCAGGGAGGAGGCGATGC
ACGGCCGCCCGCGGCGACCGGCCAAGCCCGAGGACGAGGAGGCGGCGTCAGCGAAAGCCG
CCAAGCTTCGGGACCTCCAGGCCCAGGTCCTGCACAATCACCATGGCCGCACGTACACAA
AGGAGGCAATTGGGCTGAGCTTCAAGCTGCTCGAGATAAATCCAGAGGCCTACACCGCAT
GGAACTACCGGAAGCTTGCGTTTCAGCACAATGTCAAGGAGCTTTCTGATCCGGAGGCCA
TCAAGTCTGCTGTTGATGATGAGCTGAGAGTGGTTGAGGTTGCTTTAAGGCAAAACCCAA
AATCCTATGGAGCTTGGTATCACCGTAAGTGGTTGCTATGCCAAAAGCTAGCGCCCGTGG
ATTTCAAACGTGAGTTTGGCCTCTTGGATAAACTGTTGAAGGTGGACGCCAGGAATTTTC
ATGGATGGAACTACAGAAGGTTCCTTGCAAGATTCATGGGTGTGTCAGATGAGGAGGAGC
TAAAGTATACTATGGATAAAATCAGCGACAACTTCAGTAATTACTCAGCATGGCATAATC
GTAGTATACTTCTGTCCAACCTACTGATCCAGCAGAGCAAAGGTTTTGAGTCAAAGCAGA
AGATTTTTTCCGAGGAGTTTGAACTTGTTACTCAAGCTCTTTTTACAGATCCAAGTGACC
AAAGTGGATGGTTCTATCACCTTTGGCTTTTAGCTCAAACGTCTTGTCCAGATAACCCCC
AGCTGATTGCTTCATGGCCTTCTAATGCTGCAAAGCTCAGTTCCTCTTTGATCAAGGAAA
AAGCTGAGCAGCACAGACAGTCATCCATCTTGTCAAGGACTGTACCCATTGTTCTTTATT
TTAATGAGCCTGTCAAAGGATTAAATCAATCAAGTGTTAACTTAAAGTCTGATTTGGAGT
TCAGTAAGGATATTATATGGAGGCCCCTCACAATGGCAGACTCTGGGTATTCTAACTGTT
GGGCCACAGATCTCCAGATTATAAATGAATGTAGCAGTTTGCAGGAATATTCTGTTGAAG
TGAGCATACCCTGCTCGAATGGCATTGTATCTAGAAGTGGCTCTAACTACAATTGTCCTG
TGCATTTTACATTTGGCATTGAATTGATCAGCAACGATCCAGTACAGGGTTTAGATATGT
TTGATAAGCCAGTTGCCTGGAATTGCTCAGAATCATTCCAGCCTCATGGGAACCGTGATC
CTATCCCTTTTGATCTGCTAAAGATTACTAGTGCCTTGATCGAGCATGACTCAAATTGGC
ATTTTGAAAGACTATCTGAGGAAATAGATCTTTTCAGAGAGTTACCTGATGACAACAGCA
AGTTTGGGAAGTTGACATTAGCCCGGTTATTGCTTGCTTGTTCTGCTATAAAATCTCGTG
GAAGATCTCTAATTGAAAGGAAGGGATACTGTGAAGAGGCACTGGGGCTCTTCACTGACT
TGATTCACCTGGATCCATCTCATAAGCAGTACTATGAGGATGAACGGAGCTTAGTCCTGA
TGGATAAATTAACATGTGACATGGAGACTTTCATGAAGCACTGTTCAGTTCAGGTTCAAC
CAAATTCAGCTCCCCTGAATCATGTGCAGCTTTGCAGATTATCTCTAACATGCATTGGAT
TTGCTGAACGCCTGTTGTGGGTTCAAATGCTGGACCTAAGCCATAATAGTCTGAGATCAG
TCGAAGGATTGGAGGCTTTGCAGCACCTTGTGTTCTTGAACATCAGCAACAACCAGATCA
GTGGTTTCACAGCACTTGAATCCCTTACGAAGATAATCTCATTGAAAGTTCTGGATTTAT
CTTTCAACAAGATTGGAGCTCACTCAATTGACACAACACGGTATATCTGCTCGTCTCCAT
TCTCACACAAAATGGAAGCAAGTGAAGCTTTTGAAGCGTACCAGAAGGTAAATATCAACG
TGGAGGAATACTGGGATGCCATACTGTTTTTCAGATCTCTGAAGTTGGCACAGCTTGATA
TAAAAGGAAATGCAGTTGCAAGCAAGGAGAACTTCAGAACTATTGTCATGATGCTCATTC
CTTGTCTAAAATGGTTTGATGGTGAAGATGTCAATTAAAATGGAGTTGAGCAATGATAGT
GTCAAGGCTCACGCTGTAAACCATTTTTTGCTAGAAGGCATTGATTTGCATCATATGTAC
TGCTATATTTGTTTAAAAAACTCGGCCGGTAGGGGAAAGACCGTCCCCCTCCTGTATTAT
ATTAATAAGAAGTTCAATC