Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014316_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:40644981:40646957:-1 gene:Zm00001d014316 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo/beta-catenin-like repeat family protein

Sequence

ATGGGGGAGGGGGTGAAGGAGATGCTGGCCCCGCCGATCCAGCTGGCCGACGAGGTCGCC
AAGCAGTGCGCTGCCGCGCGGAGCTTCCGCGCCGAGTGCGCCGAACTCAAGGCCCGCGCG
GACAAGCTGGCGGCGCTGCTGCGGCAGGCGGCGCGGGCCCCGGAGCTCTACGACCGCCCC
GCGGCCCGCATCTTGGCCGGGGCCACCCAGGCGCTGTCCAGAGCCTCGGCCCTCGCCGCC
CGGTGCGCTCGGGGCCACCCGCGGCTGCGCAGCCTCTTCACGCTCAGCCCCGCCGCCGGG
TTCCCCCGGGCCGTGGCGGCGCTCGACACGGCGCTCGAGGACGTCGCGTGGCTGCTCCGC
ATCTCCTCGCCTGGTGCCACCGGCGAAGGGGACGACGACTCGCTCCTGGGCCTCCCCAAC
ATCGCGCAGAACGAGCCCATCCTCTTCTTAATCTGGGACCACGTCGCGCGCCTGCACACG
GGTTCCCCCGCCGCCCGCGCTGACTCGGCCGCCAACCTCGCCTCGCTCGCCCGCGACAAC
CAGCACTTTGCCAAGCTCATCATCGAGGAGGACGGCGTGCCGCCGCTGCTCAAGCTGCTC
AAGGACGGCACCGACGAAAGCCAGGAGGCCGCGGCACGGGCTCTGGGCTTCCTCGGCTGT
GACGCCGAGAACGTGGACAAGCTCGTGCAGGCCGGGGTTTGCTCCTCCTTCGCTGCCGCG
CTCAAGGAGCCGCCCATGCGCGTGCAGGCTGCAGTGGCGGAGGCCATCGCGTCCCTCGCC
GACCGGAGCTCCACCTGCCAAGACCTTTTCGCGCAGAACAATGCCGTCCGGTACCTTGTC
GCACACCTCGCTTCCGGGACTATCCAGGAGCACAGCCGGTACTCCGTCGGCTCCAGCAGC
TCCAAGAACAGCGCAGCCGCTGCTGCCACAGCACAGCAGCACATGAAGTCGCTCCACTCT
GTTGTGCTTGCCAAGACGCTCAGCATGCGCCACAGCGGTGACTGTGACACCTCCATCCGC
GGCGCTGATGGTCTGCCAAGGATGTCCAATGGTACACCAGGATGCGATCAAGACACAAAA
AGGAACCCCCAGATGCAGTCAGTGGTACACTCGGCTATGTCTGCCAAGACAAACACAAAT
GGCTCATTGGTTCCGCCCTTCAGGCCTCAGCTGGGCACCAGTGGCTCCAGTGGCCGTGGT
GCTCGTGAAGTGGAGGATCCTGAAACCAAGGCACAATTGAAGGCTATGGCGGCAAAAGCT
TTGTGGAAGCTTGCTCATAACCATTTGGGTGTGTGCAAGAGCATTACAGAGTCACGCGCG
CTGCTGTGCTTTGCTGTGCTCCTTGAGAAGGGTGATGGCGATATGGGCACTGATGTGCAG
TACTTCTCAGCAATGGCCATCATGGAGATTGCCCGTGTTGCTGAACACAGCCTCGTGCTG
CGGCAATCAGCATTCAAACCCAGCTCCCCAGCTGCCAAGGCTGTTGTTGATCAGCTGCTT
GGTGTTGTCTGCAGGGGTGAATACGATACATTGCTTCTCCCATGCATCACTGGCCTTGGA
TGCCTTGCCCGTACCTTCACAGCAAGTGAGACCAGGATAGTGGCCCCTCTTGTGCAGCTT
CTCGATGAGCGCGAGCCTCCAGTCATAAAGGAGGCTGTTGTTGCGCTCACCAAGTTTGCG
TGCACTGAGAACCATCTACATGTGAACCACTGCAAAGCCATTGTTGATGATGGTGGTGCG
CGCCACCTTGTCCAGCTTGTCTACCTTGGTGATGAGGTGCAGATTGAGGCGCTCATACTA
CTCTGTTACATTGCATTGTATGTGCCTGAGAGCGAGGAACTCGCGCAAGCTGGTGTGCTG
GCCGTGCTGCTTTGGGCATCAAAGCAGGCTCAAATGGTGCAGGACACACGTGTTGAGGCA
TTGCTTCCAGATGCGAAAGGGAGGCTTGAGCTGTTCCAGTCCAGGGCCTCCAGGTGA

Peptide Sequence

PEP ID

Zm00001d014316_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:40644981:40646957:-1 gene:Zm00001d014316 transcript:Zm00001d014316_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo/beta-catenin-like repeat family protein

Sequence

MGEGVKEMLAPPIQLADEVAKQCAAARSFRAECAELKARADKLAALLRQAARAPELYDRP
AARILAGATQALSRASALAARCARGHPRLRSLFTLSPAAGFPRAVAALDTALEDVAWLLR
ISSPGATGEGDDDSLLGLPNIAQNEPILFLIWDHVARLHTGSPAARADSAANLASLARDN
QHFAKLIIEEDGVPPLLKLLKDGTDESQEAAARALGFLGCDAENVDKLVQAGVCSSFAAA
LKEPPMRVQAAVAEAIASLADRSSTCQDLFAQNNAVRYLVAHLASGTIQEHSRYSVGSSS
SKNSAAAAATAQQHMKSLHSVVLAKTLSMRHSGDCDTSIRGADGLPRMSNGTPGCDQDTK
RNPQMQSVVHSAMSAKTNTNGSLVPPFRPQLGTSGSSGRGAREVEDPETKAQLKAMAAKA
LWKLAHNHLGVCKSITESRALLCFAVLLEKGDGDMGTDVQYFSAMAIMEIARVAEHSLVL
RQSAFKPSSPAAKAVVDQLLGVVCRGEYDTLLLPCITGLGCLARTFTASETRIVAPLVQL
LDEREPPVIKEAVVALTKFACTENHLHVNHCKAIVDDGGARHLVQLVYLGDEVQIEALIL
LCYIALYVPESEELAQAGVLAVLLWASKQAQMVQDTRVEALLPDAKGRLELFQSRASR

Transcript Sequence

Transcript ID

Zm00001d014316_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:40644981:40646957:-1 gene:Zm00001d014316 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo/beta-catenin-like repeat family protein

Sequence

ATGGGGGAGGGGGTGAAGGAGATGCTGGCCCCGCCGATCCAGCTGGCCGACGAGGTCGCC
AAGCAGTGCGCTGCCGCGCGGAGCTTCCGCGCCGAGTGCGCCGAACTCAAGGCCCGCGCG
GACAAGCTGGCGGCGCTGCTGCGGCAGGCGGCGCGGGCCCCGGAGCTCTACGACCGCCCC
GCGGCCCGCATCTTGGCCGGGGCCACCCAGGCGCTGTCCAGAGCCTCGGCCCTCGCCGCC
CGGTGCGCTCGGGGCCACCCGCGGCTGCGCAGCCTCTTCACGCTCAGCCCCGCCGCCGGG
TTCCCCCGGGCCGTGGCGGCGCTCGACACGGCGCTCGAGGACGTCGCGTGGCTGCTCCGC
ATCTCCTCGCCTGGTGCCACCGGCGAAGGGGACGACGACTCGCTCCTGGGCCTCCCCAAC
ATCGCGCAGAACGAGCCCATCCTCTTCTTAATCTGGGACCACGTCGCGCGCCTGCACACG
GGTTCCCCCGCCGCCCGCGCTGACTCGGCCGCCAACCTCGCCTCGCTCGCCCGCGACAAC
CAGCACTTTGCCAAGCTCATCATCGAGGAGGACGGCGTGCCGCCGCTGCTCAAGCTGCTC
AAGGACGGCACCGACGAAAGCCAGGAGGCCGCGGCACGGGCTCTGGGCTTCCTCGGCTGT
GACGCCGAGAACGTGGACAAGCTCGTGCAGGCCGGGGTTTGCTCCTCCTTCGCTGCCGCG
CTCAAGGAGCCGCCCATGCGCGTGCAGGCTGCAGTGGCGGAGGCCATCGCGTCCCTCGCC
GACCGGAGCTCCACCTGCCAAGACCTTTTCGCGCAGAACAATGCCGTCCGGTACCTTGTC
GCACACCTCGCTTCCGGGACTATCCAGGAGCACAGCCGGTACTCCGTCGGCTCCAGCAGC
TCCAAGAACAGCGCAGCCGCTGCTGCCACAGCACAGCAGCACATGAAGTCGCTCCACTCT
GTTGTGCTTGCCAAGACGCTCAGCATGCGCCACAGCGGTGACTGTGACACCTCCATCCGC
GGCGCTGATGGTCTGCCAAGGATGTCCAATGGTACACCAGGATGCGATCAAGACACAAAA
AGGAACCCCCAGATGCAGTCAGTGGTACACTCGGCTATGTCTGCCAAGACAAACACAAAT
GGCTCATTGGTTCCGCCCTTCAGGCCTCAGCTGGGCACCAGTGGCTCCAGTGGCCGTGGT
GCTCGTGAAGTGGAGGATCCTGAAACCAAGGCACAATTGAAGGCTATGGCGGCAAAAGCT
TTGTGGAAGCTTGCTCATAACCATTTGGGTGTGTGCAAGAGCATTACAGAGTCACGCGCG
CTGCTGTGCTTTGCTGTGCTCCTTGAGAAGGGTGATGGCGATATGGGCACTGATGTGCAG
TACTTCTCAGCAATGGCCATCATGGAGATTGCCCGTGTTGCTGAACACAGCCTCGTGCTG
CGGCAATCAGCATTCAAACCCAGCTCCCCAGCTGCCAAGGCTGTTGTTGATCAGCTGCTT
GGTGTTGTCTGCAGGGGTGAATACGATACATTGCTTCTCCCATGCATCACTGGCCTTGGA
TGCCTTGCCCGTACCTTCACAGCAAGTGAGACCAGGATAGTGGCCCCTCTTGTGCAGCTT
CTCGATGAGCGCGAGCCTCCAGTCATAAAGGAGGCTGTTGTTGCGCTCACCAAGTTTGCG
TGCACTGAGAACCATCTACATGTGAACCACTGCAAAGCCATTGTTGATGATGGTGGTGCG
CGCCACCTTGTCCAGCTTGTCTACCTTGGTGATGAGGTGCAGATTGAGGCGCTCATACTA
CTCTGTTACATTGCATTGTATGTGCCTGAGAGCGAGGAACTCGCGCAAGCTGGTGTGCTG
GCCGTGCTGCTTTGGGCATCAAAGCAGGCTCAAATGGTGCAGGACACACGTGTTGAGGCA
TTGCTTCCAGATGCGAAAGGGAGGCTTGAGCTGTTCCAGTCCAGGGCCTCCAGGTGA