Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014314_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:40630521:40633058:1 gene:Zm00001d014314 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat-like superfamily protein
Sequence

ATGCGCCTCCTCGCCGCCGCGGCGAGACAATCCAATACACCGCAGCGTATTCTCGTCACC
CTCCACCACTTCATATCCACAGCGACGACGACCACGTCCTCCTCGGCATACGATCCAACC
GCGCAGTTCATCCATCCTGACCAGCATCGTCTCTTGCCACTGCCAGCATCTCTCCGCCGT
CACGCCGTCCTCGCACTCGCGGACCTTCTCAAGACCTCCCTGCAATGCCACCTTGCGCTC
CACGCTGTCAGCCCACTCTCTGGCTCCCCCTACTCCACCCCGTTCGCCTCCCGCTTCGCC
GCCGCCGCCCACCTCGCCACGTCGGATCCCGCGCTTCGCCCCTTTGCAGCGATCCTCATC
GCAGCGCTCCTCCCGGTCGCCTCCTCGGACCTCCTTTTGTGGTCGTCCAGTGACAGTGCC
AGCGGGAGCGCGCGCGCCCACTACTGCGCGCTCCGGCTCGCGCTCCACGCATTCCTCGCC
GCGGGCATGGCAGCAGAGGCACTCGACGTGCTCGCGCGCGTCCGCCGCTCTGGTAACACG
CCCAGCCTCTCCGCGTTGTCTGCATTGCTGCGCCTTCTATTCCGAAGCGGGGAGGTCCGC
GCTGCCTGGAACGTGTTCGAGGAAATGACCGCAGAAGGACCACGGCCGAGCCTCGCCACC
TTCAACGCCATGCTCCTCGGGTTCTGCCACAGGGGGATGGTGCGAGTCGCCTCCGGGCTG
CTTGGGATCATGGGGAAGTCTGGTATCGCCCCCGACGTGTGCAGCTATAACATTCTCATC
AAGGGGCACTGTGTGTTTGGGTGGTCCCGGGACGCCTTCAAGATGTTTGAAGGAATGCAC
AGGTCAGGGTGTGAGCCAACAGTTGTGACATATAACATACTAGTGGATGTTCTGTGCCAT
GAGGGGAGGATGCCAGAAGCAAGGAGGTTGTTCGATGAAATGGCCCAGGTGGGGATCCAA
GTAAATACAATCACGTTCAATGTTTTGATTGATGGATATGCAAAGAGTGGACAGATGGAT
CAGGCCAGTGCAGCCTATAGGGAGATGCAAGCGAGGGGATTAGTGCCAGACTCCTGCACC
TTCAACATTATTGCTGCTAGAGCTCACAAGTTCGGGTATGCTGCCCAGTTAGTCCATGAC
CATGACATGTTTAGTTCACATATGTCGGCTGATGGGTTGGATATGTTGGTCTGTAGGCTT
TGTTGGGATCATCGATTGGATGATGCCTGGGAGCTTCTGCTTGGTGCTATTGAGCAGGGT
GTTCCATTGCGTGTTACTGGATTTAATGCATTGATCGCTGCTTATAGTAAGGAGGGACTC
CATGAAGAAGCTTCTGAACTGTATAGAATTATGAACAAGTTAGGACTGGCACCATCCTCG
TCTACTTTTAATTACTTGATAATGGGGCTCTGCAATCAAGGAAGACTTGATGAGGCACAG
CTTCTTTTAGAGCACATGGTTAGCAAAGGATATTGTCTAAGTACATCATTTACTATCTGC
TTGGATGCATACTTCAGAGACGGTAATGCAGTTGGCGCACTGAAATGCTGGGATGATATG
GGCAATATTGGTTTGCAGACTGATTTTATTGCCTTCTCAGCATATATTAATGGCCTATGC
CGATTAGATTGCGTGAATGAGGCTTATCAGGCATTTGCTGAGATGACAAGCAGAGGAATT
GTACCAAACAATATTACTTACAACTCCATCATATCTGCACTTTGTAAGGCAGGCAATATG
ACTGAAGCCTTGAAGTTAGTTCAGAATATGAGGCAGAGTGGCCTTGTTCCTGACATTTAC
ACAAGCAACATTCTAATCGACGGTTTGTGCAGAGAAGGAAAGCTGAAGATGGTGGACAAC
CTTTTATTGGATATGTGCAGTAATGGTCTAACCCCAGACACAGTGACATATAATACAATA
ATCAATGCATATTGTAGGGCTCAGGATATGAACAGTGCCATGAATTTCATGAATAAGATG
CTTGTAGCTGGTTGTGAACCAGATATTTTCACATATAATATTTGGATGCATAGCCTCTGC
AGGAACCATATGTTGAACCAAGCAGGGAAGCTGCTAGATGAGCTTGTTGCTGTGGATTGT
TCTCCAAATTCTGTTACGTACAACACATTAATGGATGGCATTTGCAGTGATGTTCTTGAT
CGAGCTATGATACTTACTGGCAGGCTTATTAAGATGGCTTTTAAACCAAACACTATCACA
CTCAACGTTTTCCTTTCTCATTTCTGCAAGCAAGGATTTGGGAATAGAGCCCTCATGTGG
GCTGAGAAGCTCAGAGAAGATTCTTTTGTTTTTGATGGTGCTACAAGAAATATAATTGAC
TGGGCACGAAGGGAAATGGAGGATGACCCCAAGGCTAACAACGAGGACATAGGAAGATGC
ATGTTTCTTGAGTTCTTAATGTTCATGACATATGAGGCTATGCTCAACAGCAGATCCTCA
AAGGCTACACATATGCTTACAGAAAAAGGTTTTGATCCTGCTAGCAGCAGCATGATTAGA
ATTTTGGATACTGGTTGA

Peptide Sequence

PEP ID

Zm00001d014314_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:40630521:40633058:1 gene:Zm00001d014314 transcript:Zm00001d014314_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat-like superfamily protein
Sequence

MRLLAAAARQSNTPQRILVTLHHFISTATTTTSSSAYDPTAQFIHPDQHRLLPLPASLRR
HAVLALADLLKTSLQCHLALHAVSPLSGSPYSTPFASRFAAAAHLATSDPALRPFAAILI
AALLPVASSDLLLWSSSDSASGSARAHYCALRLALHAFLAAGMAAEALDVLARVRRSGNT
PSLSALSALLRLLFRSGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGL
LGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCH
EGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCT
FNIIAARAHKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWDHRLDDAWELLLGAIEQG
VPLRVTGFNALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQ
LLLEHMVSKGYCLSTSFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLC
RLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIY
TSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKM
LVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGICSDVLD
RAMILTGRLIKMAFKPNTITLNVFLSHFCKQGFGNRALMWAEKLREDSFVFDGATRNIID
WARREMEDDPKANNEDIGRCMFLEFLMFMTYEAMLNSRSSKATHMLTEKGFDPASSSMIR
ILDTG

Transcript Sequence

Transcript ID

Zm00001d014314_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:40630521:40633058:1 gene:Zm00001d014314 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat-like superfamily protein
Sequence

ATGCGCCTCCTCGCCGCCGCGGCGAGACAATCCAATACACCGCAGCGTATTCTCGTCACC
CTCCACCACTTCATATCCACAGCGACGACGACCACGTCCTCCTCGGCATACGATCCAACC
GCGCAGTTCATCCATCCTGACCAGCATCGTCTCTTGCCACTGCCAGCATCTCTCCGCCGT
CACGCCGTCCTCGCACTCGCGGACCTTCTCAAGACCTCCCTGCAATGCCACCTTGCGCTC
CACGCTGTCAGCCCACTCTCTGGCTCCCCCTACTCCACCCCGTTCGCCTCCCGCTTCGCC
GCCGCCGCCCACCTCGCCACGTCGGATCCCGCGCTTCGCCCCTTTGCAGCGATCCTCATC
GCAGCGCTCCTCCCGGTCGCCTCCTCGGACCTCCTTTTGTGGTCGTCCAGTGACAGTGCC
AGCGGGAGCGCGCGCGCCCACTACTGCGCGCTCCGGCTCGCGCTCCACGCATTCCTCGCC
GCGGGCATGGCAGCAGAGGCACTCGACGTGCTCGCGCGCGTCCGCCGCTCTGGTAACACG
CCCAGCCTCTCCGCGTTGTCTGCATTGCTGCGCCTTCTATTCCGAAGCGGGGAGGTCCGC
GCTGCCTGGAACGTGTTCGAGGAAATGACCGCAGAAGGACCACGGCCGAGCCTCGCCACC
TTCAACGCCATGCTCCTCGGGTTCTGCCACAGGGGGATGGTGCGAGTCGCCTCCGGGCTG
CTTGGGATCATGGGGAAGTCTGGTATCGCCCCCGACGTGTGCAGCTATAACATTCTCATC
AAGGGGCACTGTGTGTTTGGGTGGTCCCGGGACGCCTTCAAGATGTTTGAAGGAATGCAC
AGGTCAGGGTGTGAGCCAACAGTTGTGACATATAACATACTAGTGGATGTTCTGTGCCAT
GAGGGGAGGATGCCAGAAGCAAGGAGGTTGTTCGATGAAATGGCCCAGGTGGGGATCCAA
GTAAATACAATCACGTTCAATGTTTTGATTGATGGATATGCAAAGAGTGGACAGATGGAT
CAGGCCAGTGCAGCCTATAGGGAGATGCAAGCGAGGGGATTAGTGCCAGACTCCTGCACC
TTCAACATTATTGCTGCTAGAGCTCACAAGTTCGGGTATGCTGCCCAGTTAGTCCATGAC
CATGACATGTTTAGTTCACATATGTCGGCTGATGGGTTGGATATGTTGGTCTGTAGGCTT
TGTTGGGATCATCGATTGGATGATGCCTGGGAGCTTCTGCTTGGTGCTATTGAGCAGGGT
GTTCCATTGCGTGTTACTGGATTTAATGCATTGATCGCTGCTTATAGTAAGGAGGGACTC
CATGAAGAAGCTTCTGAACTGTATAGAATTATGAACAAGTTAGGACTGGCACCATCCTCG
TCTACTTTTAATTACTTGATAATGGGGCTCTGCAATCAAGGAAGACTTGATGAGGCACAG
CTTCTTTTAGAGCACATGGTTAGCAAAGGATATTGTCTAAGTACATCATTTACTATCTGC
TTGGATGCATACTTCAGAGACGGTAATGCAGTTGGCGCACTGAAATGCTGGGATGATATG
GGCAATATTGGTTTGCAGACTGATTTTATTGCCTTCTCAGCATATATTAATGGCCTATGC
CGATTAGATTGCGTGAATGAGGCTTATCAGGCATTTGCTGAGATGACAAGCAGAGGAATT
GTACCAAACAATATTACTTACAACTCCATCATATCTGCACTTTGTAAGGCAGGCAATATG
ACTGAAGCCTTGAAGTTAGTTCAGAATATGAGGCAGAGTGGCCTTGTTCCTGACATTTAC
ACAAGCAACATTCTAATCGACGGTTTGTGCAGAGAAGGAAAGCTGAAGATGGTGGACAAC
CTTTTATTGGATATGTGCAGTAATGGTCTAACCCCAGACACAGTGACATATAATACAATA
ATCAATGCATATTGTAGGGCTCAGGATATGAACAGTGCCATGAATTTCATGAATAAGATG
CTTGTAGCTGGTTGTGAACCAGATATTTTCACATATAATATTTGGATGCATAGCCTCTGC
AGGAACCATATGTTGAACCAAGCAGGGAAGCTGCTAGATGAGCTTGTTGCTGTGGATTGT
TCTCCAAATTCTGTTACGTACAACACATTAATGGATGGCATTTGCAGTGATGTTCTTGAT
CGAGCTATGATACTTACTGGCAGGCTTATTAAGATGGCTTTTAAACCAAACACTATCACA
CTCAACGTTTTCCTTTCTCATTTCTGCAAGCAAGGATTTGGGAATAGAGCCCTCATGTGG
GCTGAGAAGCTCAGAGAAGATTCTTTTGTTTTTGATGGTGCTACAAGAAATATAATTGAC
TGGGCACGAAGGGAAATGGAGGATGACCCCAAGGCTAACAACGAGGACATAGGAAGATGC
ATGTTTCTTGAGTTCTTAATGTTCATGACATATGAGGCTATGCTCAACAGCAGATCCTCA
AAGGCTACACATATGCTTACAGAAAAAGGTTTTGATCCTGCTAGCAGCAGCATGATTAGA
ATTTTGGATACTGGTTGA