Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014297_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:5:40029927:40049929:1 gene:Zm00001d014297 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:histidine kinase3 description: histidine kinase3
Sequence

ATGTATGGTTCTGATTTTACTCCATCTGGTGATCTGCATATTAGTAGCATTGATTTTGGA
GACCCAACACGCAAACATGAGATGCATTGCAGATTTAAACATGAACCTTCACTGCCATGG
TCTGCAATAATAATATCAACAGCTGTAGCTATAATTGTTTTGCTTGTTGGACATATTATT
TATGCAACTCTGAACTCCCTTGAAAAGGCTGAACATGATTATAGAGTAATGAGAGAACTT
AAAGGACAAGCTGAAGCTGCAGATATAGCAAAATCTCAGTTTCTAGCAACTGTTTCCCAT
GAGATTCGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAGATGCTAATGGACACTGAA
CTTGATACAACTCAGCAGGATTTTGTAGTCACCGCTCAAGAAAGTGGAAAGGTATTAATA
AACTTAATAAATGAAGTCCTTGATCTGGCTAAGATAGAGTCAGGAAGGATTGAGCTGGAA
GCAGTGCCTTTTGATGTCCGTGATATTCTTGACAATGTGATATCTCTTTTCTACGATAAA
TCACAAGCTAAAGGCATAGAGTTGGCCGTGCTTGTATCTGACCAAGTTCCTGATGTCCTA
ATTGGGGATCCATGGCGGTTCCGGCAGATCATTACGAACCTTGTGGGGAATTCTATGAAG
TTTACTGAACAGGGCCACATCTTTGTTCAAGTCCATTTGGTCAAGGAACTAAACAGGAAA
GGAAACAATTTTTGTGATGTTTCTGCTCATAACAGAGAAATTCTGTATGATTCTGACAAC
TCGATGCTATGGAACACACTAAGCGGACTTGAAGTAGCAGATAGCTGGAGGTCCTTGGAG
AATTTTACGATGTTCAAGAATTCAAATGGTGAAACAGATACAATTAGGTTAGCTGTCAGA
GTTGAAGACACCGGCATAGGAATAACAAAAGATGCTCAAATGCGTATTTTTACACCTTTC
ATGCAAGCTGACAGTTCCACCTCACGAACATATGGTGGAACTGGAATTGGCTTGAGTATT
ACAAAACGTTTAGTTGAATTGATGGGTGGAGAAATAGGGTTTACTAGTAAATCAGGAGTT
GGTAGTACATTTTCTTTTACTGCCATTTTCAAGGAGAACAGAGGATGTCCTGGAGATATG
AAAAGATACTATTCTGAACCTACTCCGTTGGATTTTCAAGGAATGAGGGCTCTTATTATT
GATGGAAGGAGTGCACGTGCAGAGGTTACTATGTACCATCTTCGTAGACTTGGAATACAG
TGCAGTCTTGTTGCCACATCTGAATCTGAATCTGCATCTTCAGCTTTGATGAAAGCCTGC
ACCTCAAGCAAAAACAATCCGGACATGGTCCTTGTTGATACAGAAGCTTGGGGTAAAGGT
TCAGGTTTGGCATTCTATCATCGTTTTGTAGATTGTCAACTAAAGGGCGCACACAAGTTT
TCTCAGCCCATGCCAAAGACTATTCTTTTGGGAAGCTCAATAAGCCCTGTTGAATCTGAT
TATTTAAGATTGACAGGATTTGGTGATTGCATAAGGAAACCCCTCCGTCTTAGTACTATT
GTTGCCTGTCTTCGCAAAACCTTAGGGGTTGGGGTTACAAGGCAGCAGAGTAGAGACCAA
TCTTTGGTTCTTCAAAGTGTACTAACTGGAAAACAGATTCTGGTTGTGGATGATAATGCA
GTCAACCGTAAAGTTGCAGCTGGTTCTTTGAAGAAATATGGATCTAAAGTTACATGTGTT
GATAGTGGGAGTGATGCAATTGATATGCTCAAGCCACCTCACACATTTGATGCTTGCTTC
ATGGATGTTCAGATGCCCGAGATGGACGGGTTTGAAGCTACAAGATTAATCCGGTCCATA
GAGAAAAAAATAAACGATATGATCATGATGGGTGAAATATCCGCTAATAATTATGGAAAT
AAGGCCCATTGGCATGTACCAATATTAGCTATGACGGCAGATGTAATCCAAGCGACTTTT
GAAAAATGTATGCAGTGTGGAATGGATGGATATGTGTCAAAGCCATTTGAAGAACAGCAG
CTCTACTTTGCTGTTGCTCATTTCTTAGAGACTGATGAAACAGAATAA

Peptide Sequence

PEP ID

Zm00001d014297_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:5:40029927:40049929:1 gene:Zm00001d014297 transcript:Zm00001d014297_T020 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:histidine kinase3 description: histidine kinase3
Sequence

MYGSDFTPSGDLHISSIDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAVAIIVLLVGHII
YATLNSLEKAEHDYRVMRELKGQAEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE
LDTTQQDFVVTAQESGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYDK
SQAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELNRK
GNNFCDVSAHNREILYDSDNSMLWNTLSGLEVADSWRSLENFTMFKNSNGETDTIRLAVR
VEDTGIGITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGV
GSTFSFTAIFKENRGCPGDMKRYYSEPTPLDFQGMRALIIDGRSARAEVTMYHLRRLGIQ
CSLVATSESESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHKF
SQPMPKTILLGSSISPVESDYLRLTGFGDCIRKPLRLSTIVACLRKTLGVGVTRQQSRDQ
SLVLQSVLTGKQILVVDDNAVNRKVAAGSLKKYGSKVTCVDSGSDAIDMLKPPHTFDACF
MDVQMPEMDGFEATRLIRSIEKKINDMIMMGEISANNYGNKAHWHVPILAMTADVIQATF
EKCMQCGMDGYVSKPFEEQQLYFAVAHFLETDETE

Transcript Sequence

Transcript ID

Zm00001d014297_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:40029927:40049929:1 gene:Zm00001d014297 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:histidine kinase3 description: histidine kinase3
Sequence

AGGATTAAACATGTGTAGAACTTCTCGGTCAAAAAAGACACTTTAGAACTTATATTTTTA
TTTTAATTAGAATTTGATGTATAAAAATTAATCATTTTTACAATGAGTGTTATAGTAATA
TAAGTTGTTATGTGTCTTGTTCAATGTGTTAATTACTATAGCATGTTCCATAGAAATACT
GTGCAGGCTGTTACTAATTCTCTCTTATTCTGTCTTTGTGGAAATTACATAATTACTAAA
CCTCATAGTAATAATAATAATAACTAAGACTCCATTTTTCTGCTAACATTACAACCTTGA
TTTCAGGAAGATCATGACAATATATTACGTTCCTGGTCAACAGGTAAAGGGGCCCTAACA
TCCCCTTTTAAGCTTCTGAAGTCCAACCATCTCGGTGTGGTGCTTACATTCACTGTATAT
AAATATGATCTGCCTCCAAATGCAACACCACAGGAGCGTATTCATGCTACATTGGGCTAT
CTTGGTGCCTCATTTGATGTCCCTTCTCTGGTTGATAAACTCCTAGAACAACTCGCTAGC
AAACGAAAGATAGTAGTTAATTTATATGACACCACAAATCATACCTCTCCTATTGAAATG
TATGGTTCTGATTTTACTCCATCTGGTGATCTGCATATTAGTAGCATTGATTTTGGAGAC
CCAACACGCAAACATGAGATGCATTGCAGATTTAAACATGAACCTTCACTGCCATGGTCT
GCAATAATAATATCAACAGCTGTAGCTATAATTGTTTTGCTTGTTGGACATATTATTTAT
GCAACTCTGAACTCCCTTGAAAAGGCTGAACATGATTATAGAGTAATGAGAGAACTTAAA
GGACAAGCTGAAGCTGCAGATATAGCAAAATCTCAGTTTCTAGCAACTGTTTCCCATGAG
ATTCGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAGATGCTAATGGACACTGAACTT
GATACAACTCAGCAGGATTTTGTAGTCACCGCTCAAGAAAGTGGAAAGGTATTAATAAAC
TTAATAAATGAAGTCCTTGATCTGGCTAAGATAGAGTCAGGAAGGATTGAGCTGGAAGCA
GTGCCTTTTGATGTCCGTGATATTCTTGACAATGTGATATCTCTTTTCTACGATAAATCA
CAAGCTAAAGGCATAGAGTTGGCCGTGCTTGTATCTGACCAAGTTCCTGATGTCCTAATT
GGGGATCCATGGCGGTTCCGGCAGATCATTACGAACCTTGTGGGGAATTCTATGAAGTTT
ACTGAACAGGGCCACATCTTTGTTCAAGTCCATTTGGTCAAGGAACTAAACAGGAAAGGA
AACAATTTTTGTGATGTTTCTGCTCATAACAGAGAAATTCTGTATGATTCTGACAACTCG
ATGCTATGGAACACACTAAGCGGACTTGAAGTAGCAGATAGCTGGAGGTCCTTGGAGAAT
TTTACGATGTTCAAGAATTCAAATGGTGAAACAGATACAATTAGGTTAGCTGTCAGAGTT
GAAGACACCGGCATAGGAATAACAAAAGATGCTCAAATGCGTATTTTTACACCTTTCATG
CAAGCTGACAGTTCCACCTCACGAACATATGGTGGAACTGGAATTGGCTTGAGTATTACA
AAACGTTTAGTTGAATTGATGGGTGGAGAAATAGGGTTTACTAGTAAATCAGGAGTTGGT
AGTACATTTTCTTTTACTGCCATTTTCAAGGAGAACAGAGGATGTCCTGGAGATATGAAA
AGATACTATTCTGAACCTACTCCGTTGGATTTTCAAGGAATGAGGGCTCTTATTATTGAT
GGAAGGAGTGCACGTGCAGAGGTTACTATGTACCATCTTCGTAGACTTGGAATACAGTGC
AGTCTTGTTGCCACATCTGAATCTGAATCTGCATCTTCAGCTTTGATGAAAGCCTGCACC
TCAAGCAAAAACAATCCGGACATGGTCCTTGTTGATACAGAAGCTTGGGGTAAAGGTTCA
GGTTTGGCATTCTATCATCGTTTTGTAGATTGTCAACTAAAGGGCGCACACAAGTTTTCT
CAGCCCATGCCAAAGACTATTCTTTTGGGAAGCTCAATAAGCCCTGTTGAATCTGATTAT
TTAAGATTGACAGGATTTGGTGATTGCATAAGGAAACCCCTCCGTCTTAGTACTATTGTT
GCCTGTCTTCGCAAAACCTTAGGGGTTGGGGTTACAAGGCAGCAGAGTAGAGACCAATCT
TTGGTTCTTCAAAGTGTACTAACTGGAAAACAGATTCTGGTTGTGGATGATAATGCAGTC
AACCGTAAAGTTGCAGCTGGTTCTTTGAAGAAATATGGATCTAAAGTTACATGTGTTGAT
AGTGGGAGTGATGCAATTGATATGCTCAAGCCACCTCACACATTTGATGCTTGCTTCATG
GATGTTCAGATGCCCGAGATGGACGGGTTTGAAGCTACAAGATTAATCCGGTCCATAGAG
AAAAAAATAAACGATATGATCATGATGGGTGAAATATCCGCTAATAATTATGGAAATAAG
GCCCATTGGCATGTACCAATATTAGCTATGACGGCAGATGTAATCCAAGCGACTTTTGAA
AAATGTATGCAGTGTGGAATGGATGGATATGTGTCAAAGCCATTTGAAGAACAGCAGCTC
TACTTTGCTGTTGCTCATTTCTTAGAGACTGATGAAACAGAATAACAAATCCAACTTCGT
AGGAGATTGATTTGCCGCAACACTGTTTCAACATCTGCCAAAAGACCATCTGTTCAACAG
GTTCTGAAAAACAGCGATCGGCAGCATATTTGCAATGGAATTGAGGTCCCAGTTCTTATA
TATAGAACTTGCTCCAGGAAACAAAATACATTGGACTCCCACTGACCAGAAGAAAGAAGA
TAAGATAGTAGGGGGTACAAAATGTTTGGTCTGGTTTCCGCAGCAATTTTTTTTCTGGCC
GTGTTTTCTGGAACCAATACAACATGACCTTGCAACAGTGGTGTCAGTTGCTTCTGTAAT
GCCTTATGACACCACGATATTTCCAAATGCTGTGTTGTAAGTGCTTTACAGACAAACCGA
GGTCCAGCTTTCTAAAACATTGAGTTCAATGACATCACTTCATCCATTATTTAAGAAAGC
GAGGGTCTTCAAATCAGGAGGATACAATTGTATCACCAAGTCAGGCACACAGTTTCAAGG
TGACTTTGTTCTGATCTGATTGTTAATGCAATCTGTAAAGAGGCAACTATGAGTTAGGGA
TTGTTTGATGCCTTGAATGTCGTATATTCATATTCCATCATTTTTGTGGGCACTTGTATA
TACATTGATGATTAATTGTATTGTTAGATAATTGTGCATTTTAAGAT