Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014150_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:5:34229450:34244983:-1 gene:Zm00001d014150 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase IIc

Sequence

ATGGAAGTAAAGTATTATCATGCATACATAGATGGTGTGGATTTTGTTTTCATTGACAAT
CCTGTCTTCCACTATGTTCAAAGTGAAATTTATGGTGGGGACCAAACTGACATCTGGAAA
CGAATGGTTTTGTTGTGCAAAGCAGCTGTAGAGGTTCAATGGTATGTTCCATGTGGTGGC
TTCTGCTACGGTGATGGAAATCTTGTGTTTATTGCAAATGATTGGCATACTGCACTTCTA
CCTGTTTATTTAAAGGCATACTATCGTGACAATGGTTTTATGCCATATGCCCGTTCAGTT
CTTGTGATACACAATATAGCACATCAGGGCCGTGGCCCGATAGATGATTTCAGGTACCTG
GATTTGCCTGGTCATTACATGGATCAGTTCAAACTTTATGATCCATTCGGAGGTGATCAT
CTAAACATTTTTGCAGCTGGTATTAGAGCTGCTGATCGTTTGCTTACCGTTAGTCATGGT
TATGCATGGGAGCTCAAAACACCTGATGGCGGCTGGGGCCTTCATAGTATCATTAATGAA
AACGATTGGAAATTCCAGGGTATTGTAAATGGTATTGATACTGCTGATTGGAATCCTAGG
CATGATGTCCATCTACAATCTGATGGGTACACCAACTATTCTCTAGAAACCGTTCAGACT
GGTAAAGCACAGTGCAAGGAAGCACTACAGAAAGAGCTTGGACTCCCTGTTCGTGGCGAT
GTTCCGGTCATTGCTTTTATTGGACGGCTGGACCATCAAAAAGGTGTAGATCTGATAGCA
GAGGCAATGCCGTGGATTGCTGGTCAGGATGTACAATTAATTATGTTGGGTACTGGAAGA
CAAGACCTTGAAGATACATTGAGGAGGCTTGAGAGCCAGCATTATGACAGGGTCCGGGGC
TGGGTTGGGTTCTCTGTCCGGTTGGCTCATCGGATGACAGCAGGGGCTGATATACTATTG
ATGCCATCAAGGTTTGAGCCATGTGGGCTGAACCAGCTATATGCCATGATGTACGGGACT
GTTCCTGTAGTTCATGCTGTTGGTGGTCTCCGCGACACAGTCCAACATTATAATCCCTAT
GAGGAGGTTGGAGTTGGATGGACTTTTGAGAAAGCAGAGGCAAACAGAATGATCGATGCC
CTAGGGCACTGCTTGAACACATACAGAAATTACTGGAGCAGTTGGGAAGGTATCCAACGT
AGAGGGATGATGCAGGACCTAAGCTGGGATAACGCTGCTAAACTCTACGAGGAAGTTCTT
CTTGCCGCCAAATATCAGTGGTGA

Peptide Sequence

PEP ID

Zm00001d014150_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:5:34229450:34244983:-1 gene:Zm00001d014150 transcript:Zm00001d014150_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase IIc

Sequence

MEVKYYHAYIDGVDFVFIDNPVFHYVQSEIYGGDQTDIWKRMVLLCKAAVEVQWYVPCGG
FCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMPYARSVLVIHNIAHQGRGPIDDFRYL
DLPGHYMDQFKLYDPFGGDHLNIFAAGIRAADRLLTVSHGYAWELKTPDGGWGLHSIINE
NDWKFQGIVNGIDTADWNPRHDVHLQSDGYTNYSLETVQTGKAQCKEALQKELGLPVRGD
VPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRG
WVGFSVRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTVQHYNPY
EEVGVGWTFEKAEANRMIDALGHCLNTYRNYWSSWEGIQRRGMMQDLSWDNAAKLYEEVL
LAAKYQW

Transcript Sequence

Transcript ID

Zm00001d014150_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:34229450:34244983:-1 gene:Zm00001d014150 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase IIc

Sequence

AGTCCGGCCCACTCGGCCACTCCCGTCGCGGCTCGCGAGGAGAGAGAAGAGTAAAAGAGC
ACCTTCTTCTCCGCGTCCCCATCCCACCACACCTCCGGATCAGCAGCGAAGTAGCCTGCA
CTACGCCGGTGCCTAGTAGTAGTAGCACCGCTCCGGCTCCACTGTTGAACGTTGAACGGA
AGCCAGACCGGCCCGCACCTTGATGCCCGCTCCTATGGCGGCTTCCACCTTCCCCGTCGC
CCCGCTGCACGCGCCGCCGCTGGTGCGCCCCCGGGTCGTCCCTCCTTCCCCCACCTTCGG
CTGCTGCTGCCGCTGCTCCGCTCCGCGCGGGGGGCTCACCTTGCGCCCGCAGGCTTGCGC
TCCACGCCGCCGCTGCAACCCCGCGATCCGCCCGGTGAGGTTCTGTGCGGAAGTTGGTTC
GGTGTGGCCCGTGGTGCTCACTCGATCGATCAGAAGGGGGTTTCAAAAGGGTATAAGTGT
CGCAAGGGTGGATGACAATGCTGCTGGTCAAGTCAGTTTAGGTGATGACAACGAGGATTT
AGACCATATCACCAACGAAACCCTTCGTACCACAATAAGGAAAAGCAAGGAAGTGCTGGC
AAGGCACAAGATCATAATGAATCAGATATCAGAAAAGAAGCAGCTCATCTCAACTATACT
AGACAGTTCCATTCATAATGAGCAAGAGCCACTCAGTGGTCAGAGTGATGGTTCCTTATC
AAACCTGAATGCAATTGCAAAGGGCACAGAGATTGGTTATGACCATCAGACATACCATAA
TAGGTCTTTACAGCAATATGAATTTGACACCACTTATGGAGAATCCATCTACGATCAGAA
CACATACTATGAAAGTTCAGAAGACGACGGCACTGATTTCAGTGAGAATTATCAGTATAA
AAGTTTTCCTAGAGCTACTCGTAGTGTGTATGAACTAGAAGAAGATAATGGTATGAAACA
AGGCTATGTGGTACAACTAAGTCAAGCAAGTGGACATGAGCAGTCAGTTAACGAGGGAAC
AAATGACAATGCGTCTGAAGTTGATGTTATGAATGTCATATTGGTAGCCGCAGAGTGTGC
TCCTTGGTCCAAAACAGGTGGGCTTGGGGATGTTGCTGGAGCTTTGCCTAAGGCTTTGGC
CAAGAGAGGTCATCGTGTCATGGTGTGCCTTTTGTGAGCTATTGTGTCTGAAAGAGATTT
AACTAAGCTCCTACTAGTTGGAAGTGGTGCAAGTTAACATGGAAGATAAACAGGATGGTT
GTAAAGTCCATAAAATCACTCATTCATCCTGTAGATGGTTGCAAAAAGATTTTTTTGAAA
ATGCAGGAGACGTGTTTTTTTATATTAAGAACAAAAAAAGGGATAAGAACCCTTACACAC
ACCAACACAAAATCAGTTCAGTTCACATGGTTACAGAGATCACCAATCCTAAGCCTTCTA
CTGTTCCCCATCCGGCACAAGGGAAAATCACTTTAGTTCAACTAAAGAGGATTGACAATT
AAGTTTGTATAGGTACCTGACATTGTGGCCACTATAAAACCATATTGAGTGGACAACCAT
AATTAACCAGCTGTGCGAGTCATGTGCTCTATGGCCTCCTTATACAAAGTGGGTTTTCAC
AAAAGACTAAGATCTATTCATGATATGTTCAGCAGAACTCATATACGTTTGGGCCAAAAA
TATTTGAGCTATATAGAAGCATTTTTCTGCAGCTCAAGTTGCCTAAATTCTAAGCAGTGT
ACCTGGATATTCTGTTTTTCAGTTTTAGGGCTAGATTGCAATGTTGTGCTCTGCTACCTT
CACTGTGCAATCTAGTTAATTGTGGGAGCCTACTATTCTATTAAACTTTTGCTTTATGGT
TCCAGTAAAAACATACCTTCATATAATTGTTATGTCCAACATTAAAAAGTACGCTCTTGA
AAAGCCACAATACCAATAGGCACAGTAGTTTTTCTAAAAAGTAGGAGCTGTATTGTTAAT
CTTGGTTAGTGCCTCATATGGGAATAACTCATGCAGTACATTCCAAAGCAAACCAGTGTT
CTTATTTGAGAGAACATAGGCTATGTTTCTGTGATTTTTGGTTAGAACAAAACTAAATTT
TCAATAGCTACAGTTGGAGAAGCATTTAAATACTAAACACATAATCATTTTTTATATTTT
TTGTTAGGTAGTAGTTCCAAAATACGGTGACTATGAGGAACCACAAGAGATAGGAGAGCC
AAGGAGCTACCACGTTGCAGGGCAGGATATGGAAGTAAAGTATTATCATGCATACATAGA
TGGTGTGGATTTTGTTTTCATTGACAATCCTGTCTTCCACTATGTTCAAAGTGAAATTTA
TGGTGGGGACCAAACTGACATCTGGAAACGAATGGTTTTGTTGTGCAAAGCAGCTGTAGA
GGTTCAATGGTATGTTCCATGTGGTGGCTTCTGCTACGGTGATGGAAATCTTGTGTTTAT
TGCAAATGATTGGCATACTGCACTTCTACCTGTTTATTTAAAGGCATACTATCGTGACAA
TGGTTTTATGCCATATGCCCGTTCAGTTCTTGTGATACACAATATAGCACATCAGGGCCG
TGGCCCGATAGATGATTTCAGGTACCTGGATTTGCCTGGTCATTACATGGATCAGTTCAA
ACTTTATGATCCATTCGGAGGTGATCATCTAAACATTTTTGCAGCTGGTATTAGAGCTGC
TGATCGTTTGCTTACCGTTAGTCATGGTTATGCATGGGAGCTCAAAACACCTGATGGCGG
CTGGGGCCTTCATAGTATCATTAATGAAAACGATTGGAAATTCCAGGGTATTGTAAATGG
TATTGATACTGCTGATTGGAATCCTAGGCATGATGTCCATCTACAATCTGATGGGTACAC
CAACTATTCTCTAGAAACCGTTCAGACTGGTAAAGCACAGTGCAAGGAAGCACTACAGAA
AGAGCTTGGACTCCCTGTTCGTGGCGATGTTCCGGTCATTGCTTTTATTGGACGGCTGGA
CCATCAAAAAGGTGTAGATCTGATAGCAGAGGCAATGCCGTGGATTGCTGGTCAGGATGT
ACAATTAATTATGTTGGGTACTGGAAGACAAGACCTTGAAGATACATTGAGGAGGCTTGA
GAGCCAGCATTATGACAGGGTCCGGGGCTGGGTTGGGTTCTCTGTCCGGTTGGCTCATCG
GATGACAGCAGGGGCTGATATACTATTGATGCCATCAAGGTTTGAGCCATGTGGGCTGAA
CCAGCTATATGCCATGATGTACGGGACTGTTCCTGTAGTTCATGCTGTTGGTGGTCTCCG
CGACACAGTCCAACATTATAATCCCTATGAGGAGGTTGGAGTTGGATGGACTTTTGAGAA
AGCAGAGGCAAACAGAATGATCGATGCCCTAGGGCACTGCTTGAACACATACAGAAATTA
CTGGAGCAGTTGGGAAGGTATCCAACGTAGAGGGATGATGCAGGACCTAAGCTGGGATAA
CGCTGCTAAACTCTACGAGGAAGTTCTTCTTGCCGCCAAATATCAGTGGTGACTGTTGTT
GAACTGTCCAAGGAACTGTTGATATTTGTCATTCATAGACCTGAAGGCTTTCTGTCGCAT
AGAAGTCACCGACTGTTTCAATTCTTTTGGTGACTGCTTCACACAGCTGCTGCATGCTTT
GTCCTGAATTTTGCAGGACGGTGTGCGTCGCAACAGCCAAATTTTTTTTGTTGTTGCCAG
TTCCTAATAATCGCATCAGATGTGAATGTGAATTCTGAGTCTACCTCCTGGACAAACACA
GTGGATGAGGCTTTTGCTGGAAACAGGTTAATGCTGGAGGAAAGATTGAGGGGAAGCGTC
GTGCACTTTTTGCAAGTGTTTACGAATTCATTTGTTCTACAGGGAGAGCTCATTTAGACG
CTTTGGTACAGGAGGGTGGTAGATAGCAGAGAAACTGATGCTTTGTATCTTGAGTAGTTT
TGTTGTATCTCTAAATTAGGATACTTGTTACAATGTTCAGTTCTTCATATTTTTTTCCGT
GCATA