Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014121_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:33104080:33106019:-1 gene:Zm00001d014121 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ent-cassadiene C2-hydroxylase
Sequence

ATGGAGCAGAAGGTTCTCGTCGCCGTGGGCGTGGCCGTGCTACTCGTCGTCGTCCTCTCC
AAGCTCAAGTCTGTGCTCGTCACCAAGCCGAAGCTTAACCTGCCCCCAGGGCCATGGACG
CTACCATTAATAGGTAGCACCCACCACCTGGTCACCAGCCCGTCGATCTACCGGGCGATG
CGTGATCTCGCGCAAAAGTACGGGCCGCTGATGATGCTCCGGCTGGGCGAGGTGCCCACG
TTGGTGGTGTCGTCGCCGGAGGCCGCGCAGGCGATCACGAAGACGCACGACATCGCGTTC
GCCGACCGTCACATGAACACCACCATCGGCGTGCTCACCTTCAACGGCACCGACCTGGTG
TTCGGTCCCTACGGCGAGCGGTGGCGGCAGCTCCGCAAGATCTGCGTGCTGGAGCTGTTC
AGCGTGGCGCGCGTGCAGTCGTTCCAGCGCATCCGCGAGGAGGAGGTGGCGCGGTTCATG
CAGAGCCTCGCGGCGTCCGCCGGCACCGTGAACCTGTCGAAGATGATCTCGAGATTCATC
AACGACACCTTCGTGAGGGAGTGCATCGGCAGCCGGTGCAAGTACCAGGACGAGTACCTG
GACGCCTTCGACACCGCGGTCCGGCAGACGTCGGTGCTGACCGTGGCCGACCTGTTCCCG
TCGTCGAGGCTCATGCAGGCTGTGGGCACCGCGCCACGCAACGCGCTCAAGTGCCGCAAC
AGGATCACGCGCATCCTGGAGCAGATCATCCGCGAGAAGGTGGAGGCCATGGGCCGTGGC
GAAAAGACGGCGCACGAGGGCTTAATCGGTGTCCTGCTCAGGCTCCAGAAAGAGGCTAAC
TTGCCCACCCTGCTCACCAACGACACCATTGTGGCGCTCATGTTTGACTTGTTCGGCGCC
GGCAGCGACACCTCGTCGACGACACTGAACTGGTGCATAACGGAGCTAATCCGGCACCCG
GCGGCGATGGCGAAAGCCCAGGCCGAGGTCCGGGAGGCCTTCAAGGGGAAGGCGAGAATC
ATCAGCGAGGACGACCTCGCCGGGGCAGGGCTTAGCTACCTGAAGCTTGTGATCAAGGAA
GCTCTGAGGATGCACTGCCCACTGCCGCTGCTGCTCCCACGGCTGTGCCGTGAGACGTGC
CAGGTGATGGGCTACGACATCCCCAAGGGCACGGCCGTGTTCATCAACGTCTGGGCGGTT
TGCAGGGACGCCAAGTACTGGGAAGATCCAGAGGAATTCAGGCCAGAGCGGTTCGAGGAC
ACCAACCTTGAGTACAACTACAAGGGGACGAACTACGAGTTCCTTCCGTTCGGGTCCGGC
CGCCGGATGTGCCCGGGAGCGAACCTTGGGCTGGGGAACATTGAGCTCGCGTTGGCGAGC
CTTCTGTACCACTATGACTGGAAGTTGCCTGACGGAGTGAAGCCACAGGACGTCCAAGTT
TGGGAGGGCCCAGGACTGATAGCCAAGAAGAAAACAGGCCTGCTGTTGCGCCCGGTTACC
TGCATTGCTTTTGCTTGCTCCAGCGGCTAG

Peptide Sequence

PEP ID

Zm00001d014121_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:33104080:33106019:-1 gene:Zm00001d014121 transcript:Zm00001d014121_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ent-cassadiene C2-hydroxylase
Sequence

MEQKVLVAVGVAVLLVVVLSKLKSVLVTKPKLNLPPGPWTLPLIGSTHHLVTSPSIYRAM
RDLAQKYGPLMMLRLGEVPTLVVSSPEAAQAITKTHDIAFADRHMNTTIGVLTFNGTDLV
FGPYGERWRQLRKICVLELFSVARVQSFQRIREEEVARFMQSLAASAGTVNLSKMISRFI
NDTFVRECIGSRCKYQDEYLDAFDTAVRQTSVLTVADLFPSSRLMQAVGTAPRNALKCRN
RITRILEQIIREKVEAMGRGEKTAHEGLIGVLLRLQKEANLPTLLTNDTIVALMFDLFGA
GSDTSSTTLNWCITELIRHPAAMAKAQAEVREAFKGKARIISEDDLAGAGLSYLKLVIKE
ALRMHCPLPLLLPRLCRETCQVMGYDIPKGTAVFINVWAVCRDAKYWEDPEEFRPERFED
TNLEYNYKGTNYEFLPFGSGRRMCPGANLGLGNIELALASLLYHYDWKLPDGVKPQDVQV
WEGPGLIAKKKTGLLLRPVTCIAFACSSG

Transcript Sequence

Transcript ID

Zm00001d014121_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:33104080:33106019:-1 gene:Zm00001d014121 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ent-cassadiene C2-hydroxylase
Sequence

ATGTCGAGCAGGAGTAGGCACACAAGATAGCTAGCTAGGAACAATGGAGCAGAAGGTTCT
CGTCGCCGTGGGCGTGGCCGTGCTACTCGTCGTCGTCCTCTCCAAGCTCAAGTCTGTGCT
CGTCACCAAGCCGAAGCTTAACCTGCCCCCAGGGCCATGGACGCTACCATTAATAGGTAG
CACCCACCACCTGGTCACCAGCCCGTCGATCTACCGGGCGATGCGTGATCTCGCGCAAAA
GTACGGGCCGCTGATGATGCTCCGGCTGGGCGAGGTGCCCACGTTGGTGGTGTCGTCGCC
GGAGGCCGCGCAGGCGATCACGAAGACGCACGACATCGCGTTCGCCGACCGTCACATGAA
CACCACCATCGGCGTGCTCACCTTCAACGGCACCGACCTGGTGTTCGGTCCCTACGGCGA
GCGGTGGCGGCAGCTCCGCAAGATCTGCGTGCTGGAGCTGTTCAGCGTGGCGCGCGTGCA
GTCGTTCCAGCGCATCCGCGAGGAGGAGGTGGCGCGGTTCATGCAGAGCCTCGCGGCGTC
CGCCGGCACCGTGAACCTGTCGAAGATGATCTCGAGATTCATCAACGACACCTTCGTGAG
GGAGTGCATCGGCAGCCGGTGCAAGTACCAGGACGAGTACCTGGACGCCTTCGACACCGC
GGTCCGGCAGACGTCGGTGCTGACCGTGGCCGACCTGTTCCCGTCGTCGAGGCTCATGCA
GGCTGTGGGCACCGCGCCACGCAACGCGCTCAAGTGCCGCAACAGGATCACGCGCATCCT
GGAGCAGATCATCCGCGAGAAGGTGGAGGCCATGGGCCGTGGCGAAAAGACGGCGCACGA
GGGCTTAATCGGTGTCCTGCTCAGGCTCCAGAAAGAGGCTAACTTGCCCACCCTGCTCAC
CAACGACACCATTGTGGCGCTCATGTTTGACTTGTTCGGCGCCGGCAGCGACACCTCGTC
GACGACACTGAACTGGTGCATAACGGAGCTAATCCGGCACCCGGCGGCGATGGCGAAAGC
CCAGGCCGAGGTCCGGGAGGCCTTCAAGGGGAAGGCGAGAATCATCAGCGAGGACGACCT
CGCCGGGGCAGGGCTTAGCTACCTGAAGCTTGTGATCAAGGAAGCTCTGAGGATGCACTG
CCCACTGCCGCTGCTGCTCCCACGGCTGTGCCGTGAGACGTGCCAGGTGATGGGCTACGA
CATCCCCAAGGGCACGGCCGTGTTCATCAACGTCTGGGCGGTTTGCAGGGACGCCAAGTA
CTGGGAAGATCCAGAGGAATTCAGGCCAGAGCGGTTCGAGGACACCAACCTTGAGTACAA
CTACAAGGGGACGAACTACGAGTTCCTTCCGTTCGGGTCCGGCCGCCGGATGTGCCCGGG
AGCGAACCTTGGGCTGGGGAACATTGAGCTCGCGTTGGCGAGCCTTCTGTACCACTATGA
CTGGAAGTTGCCTGACGGAGTGAAGCCACAGGACGTCCAAGTTTGGGAGGGCCCAGGACT
GATAGCCAAGAAGAAAACAGGCCTGCTGTTGCGCCCGGTTACCTGCATTGCTTTTGCTTG
CTCCAGCGGCTAGCTGATGCGTAATAAATTAACGACAAGCCCAACATACTTTGGAGAACT
GGACGACACTTGTCGCTTCGACGGTGCTGTAAAAATTCAACAAATACTACTCCCCCCAAG
CACTAGGAAGATAGTAGAGTGTTGTCTTATACTTGGAAGTCTAAGTAATCTACAAATATA
GAAGTTAGGCCTTCCTTACTATCGTGGCCTGTTATGGTTAGTTAAGATAAGATCCTCTAC
AGTTGCTGATACGGATAACAGATTGACAAACAGGCTCTCCTTTCC