Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d014088_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:31964458:31969219:1 gene:Zm00001d014088 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGACGACGCCATGCCTGGGCGCCGCGGCCTTAAGCGCCAGCTGGACGGCGCCCTCCCTG
ACGGGGGCGTTTCTCGATCTGACGCTCGCCTGGGCCTGCCTCTGCCTCGCCGCGCTCGCC
GCCGTCGCCGCGCGCCTCCTCGCGCTCCTCGGCCTCCCGCTCCCCTGCACCTGCGCGCGC
CCGCACCTGCCCTGCCTCCTCGCCTTCCTGGCGCGCTACCCTCCCCGCGCCGTCGGATCC
CTTCACGCCGCCCTCCGCGCCCGCTTCCCCTTCGCCGGCCCCACCGACGACGAGGCACGC
CTTCAGAAAGGGGTGGAGGAAGAGGGGGAGGAGGAGGCCATCGACGCGCCGAAGGAGGAA
GGGGATTTTCGTCGCCGCGTGGAGGCGCGCGCCGAGCTGCAGATGGAGCTCGAGAAAGAG
CGCAGCGCCGCAGCGTCGGCGGCCGAGGAGGCCATGTCCATGATCCTGCGCCTGCAGAAG
GAGAAGTCGGCGCTTGAGATTGAGGCGCGACAGCAGCGCCGAACCGCTGACGAGCGCTGC
GCCTTCTACGAGGACGAGGTCGAGGAGCTCCGGGACATCGTGCTCGTGCGGGAGCGTGAG
GTGCGCGCGCTGCGCAAGGAGGTTGACGCCTACCGACGCCTGCTCGGTTTTAGCGCTACC
GAGGAGGACGAGGAGGAGGATGACGAGCAGGAGATGGTCACGCCGCATAGTTTCCCCATG
TACGAAGGAGAGCCCAGCTCGTCCAAATCGGTCGATGCGAATCGGATGCAACATTTTGGG
AATGATTCTGGGTTCAGCTTCAAGACGCCATCACCGCGTGAACAACCAACGGTGCCGCCT
CTTACTGCAGGGCAAATCAATGTGGGAAGCGATGATTGTGTTGCTGTTCAGACGCCGGCC
AAAGTTCCCGTGGTTCAATCAAGACTGGAGCTAGATAGCTCTGAGGATGAGGACGAGGAT
GAGGATGATGGAGCAGAGACGGTGGAAATCCTCCCCCTATCCGCCCGGAGCCAAGATTTG
GATCAAGGTAGCCATTTCCATGCTGATACTGCACAAGGTATGGAATCGACTTGTACCAAG
GAACAGACAGCTCATGCATTTCAGGAAATCGAGTGTCCAGGTATAGACAAGATTGTTAAT
GACCAGATAGGAAGCAAGAATGATGCCAATGTGTATGATGTGCATGTGGTCGATGACATA
CGCTTCTCAACAGAAGTCAAGGGCCTGATTGGCCGAAGCTTCTCAGAGGCAACAATGCAA
GCAGAGAGATTACAGTCTCGAGCTGTTGCAGATGATCTCCTTGAGAAAAGCCTGAATGCC
ATCAAAGGTGCACAGGACAAGATAAGAAATGCAGCTAATGAAAGGAGGCAGTCATTACAG
TTGCAACTCTTAGAGGACATAGCTGATCAACTTCAAGGAATCAAGGATGCTGCAGAAGCA
GGGAGGCAAGTGTTCTGTGCTGCTCCTAAAAGCTCCAAGAGGAGCTAG

Peptide Sequence

PEP ID

Zm00001d014088_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:31964458:31969219:1 gene:Zm00001d014088 transcript:Zm00001d014088_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MTTPCLGAAALSASWTAPSLTGAFLDLTLAWACLCLAALAAVAARLLALLGLPLPCTCAR
PHLPCLLAFLARYPPRAVGSLHAALRARFPFAGPTDDEARLQKGVEEEGEEEAIDAPKEE
GDFRRRVEARAELQMELEKERSAAASAAEEAMSMILRLQKEKSALEIEARQQRRTADERC
AFYEDEVEELRDIVLVREREVRALRKEVDAYRRLLGFSATEEDEEEDDEQEMVTPHSFPM
YEGEPSSSKSVDANRMQHFGNDSGFSFKTPSPREQPTVPPLTAGQINVGSDDCVAVQTPA
KVPVVQSRLELDSSEDEDEDEDDGAETVEILPLSARSQDLDQGSHFHADTAQGMESTCTK
EQTAHAFQEIECPGIDKIVNDQIGSKNDANVYDVHVVDDIRFSTEVKGLIGRSFSEATMQ
AERLQSRAVADDLLEKSLNAIKGAQDKIRNAANERRQSLQLQLLEDIADQLQGIKDAAEA
GRQVFCAAPKSSKRS

Transcript Sequence

Transcript ID

Zm00001d014088_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:31964458:31969219:1 gene:Zm00001d014088 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCCACCGACTGTCCTCTCTCAATTCACGAGGAAAAAAAAGAATAATCTCTCCACTTTCCT
TCAGGATCCAGCCCGCACCACCGCACGTCTCCTCCTCTCTCAACACCGGCCACCGTAACA
GGAATAATCCAGCTCGTGATTGAAGAATCCGATGACGACGCCATGCCTGGGCGCCGCGGC
CTTAAGCGCCAGCTGGACGGCGCCCTCCCTGACGGGGGCGTTTCTCGATCTGACGCTCGC
CTGGGCCTGCCTCTGCCTCGCCGCGCTCGCCGCCGTCGCCGCGCGCCTCCTCGCGCTCCT
CGGCCTCCCGCTCCCCTGCACCTGCGCGCGCCCGCACCTGCCCTGCCTCCTCGCCTTCCT
GGCGCGCTACCCTCCCCGCGCCGTCGGATCCCTTCACGCCGCCCTCCGCGCCCGCTTCCC
CTTCGCCGGCCCCACCGACGACGAGGCACGCCTTCAGAAAGGGGTGGAGGAAGAGGGGGA
GGAGGAGGCCATCGACGCGCCGAAGGAGGAAGGGGATTTTCGTCGCCGCGTGGAGGCGCG
CGCCGAGCTGCAGATGGAGCTCGAGAAAGAGCGCAGCGCCGCAGCGTCGGCGGCCGAGGA
GGCCATGTCCATGATCCTGCGCCTGCAGAAGGAGAAGTCGGCGCTTGAGATTGAGGCGCG
ACAGCAGCGCCGAACCGCTGACGAGCGCTGCGCCTTCTACGAGGACGAGGTCGAGGAGCT
CCGGGACATCGTGCTCGTGCGGGAGCGTGAGGTGCGCGCGCTGCGCAAGGAGGTTGACGC
CTACCGACGCCTGCTCGGTTTTAGCGCTACCGAGGAGGACGAGGAGGAGGATGACGAGCA
GGAGATGGTCACGCCGCATAGTTTCCCCATGTACGAAGGAGAGCCCAGCTCGTCCAAATC
GGTCGATGCGAATCGGATGCAACATTTTGGGAATGATTCTGGGTTCAGCTTCAAGACGCC
ATCACCGCGTGAACAACCAACGGTGCCGCCTCTTACTGCAGGGCAAATCAATGTGGGAAG
CGATGATTGTGTTGCTGTTCAGACGCCGGCCAAAGTTCCCGTGGTTCAATCAAGACTGGA
GCTAGATAGCTCTGAGGATGAGGACGAGGATGAGGATGATGGAGCAGAGACGGTGGAAAT
CCTCCCCCTATCCGCCCGGAGCCAAGATTTGGATCAAGGTAGCCATTTCCATGCTGATAC
TGCACAAGGTATGGAATCGACTTGTACCAAGGAACAGACAGCTCATGCATTTCAGGAAAT
CGAGTGTCCAGGTATAGACAAGATTGTTAATGACCAGATAGGAAGCAAGAATGATGCCAA
TGTGTATGATGTGCATGTGGTCGATGACATACGCTTCTCAACAGAAGTCAAGGGCCTGAT
TGGCCGAAGCTTCTCAGAGGCAACAATGCAAGCAGAGAGATTACAGTCTCGAGCTGTTGC
AGATGATCTCCTTGAGAAAAGCCTGAATGCCATCAAAGGTGCACAGGACAAGATAAGAAA
TGCAGCTAATGAAAGGAGGCAGTCATTACAGTTGCAACTCTTAGAGGACATAGCTGATCA
ACTTCAAGGAATCAAGGATGCTGCAGAAGCAGGGAGGCAAGTGTTCTGTGCTGCTCCTAA
AAGCTCCAAGAGGAGCTAGGGACTTGTGTTACGCCACTAATGCATGGTTGGCGTCGTACA
TAAGTTGTTTCGGGTTTGTAGACCAGGTCTGTTGATTTGTTGATTCAACAAGTTTGCTTC
TTCTTCTTTAAATAAGTAGTGGCTATTGCTTTGTACATGTATATATATAAACAACATGGG
ATTCATCCCAGTCTTTATAAAACGAATATATGTGTAAAGAAAAACGAAATGGATATTTGA
TCAGGAAGGCAGGAAGCTGACTGTACTGCCGTTGTATCGGACGACAGTTTGTTGGACATG
TCCAACCATAATCAAACGGGTCAAACCTGAGAATGACAGCAAATGCAGAAGTTGGCCTGA
ATATAACATTTCTTGATTTGCAATGCAGAGAAGTCAAGTATAAATTTCAATCACTCCATA
TCTTTGTCAAACATTCAAACCATCTTCACAAGTTGACTCATTCAGCAGCCTGGTGCTCAA
AGACCAAATGAGAGGGTAATGTAAATCAATCAGGTATTTTCATTCCCGTCAACTACTCTG
ATTTCAACATTTCAGAAAAAAAATGTGTTGCTAAACTCCTTGGCCCTAGGTTTAACTCTT
GTACAAAGCTGAAAAGTACACACAATTTGGTTGATAACTGAAAAATCGTGATTGGCGGTA
TTAGTAAGTTCTATAATAAAGCTGTTGATGAGATTGATTCATATCCTCACTGCTTCAAGG
CAGATATTGGAATGGGGAAACCACTTGCAGCAATCGGCAAGTTCTAATGCTTTGTACAGG
TGGACCAGTCAACGGTGGACATCAAAGAGAGATTTGGGAAGTTTAAGGATGTACTTGATC
CTGGATGCCGTTTTGTGCCGTGGATCATTGGAAACCGCGTCGAAGGTCAGCTCACGCATT
GGAAACCGTTGTGAGACGAAGACAAAGGATAATGTTTTCGTTACGGTTGTTGCATCCATT
CAATACCGGGCGATGGAAGACAAAGCATGCAATGCATATTATAAGCTGAGCAACCCAAAA
GCTCAAATTCAATCATACGTCCTTGATGAATCCTTAAAAGCATGCAGCTGTTCTGAATTC
TGAAACAGGGAGCAGGGGAGTAGTAGTCATTTCTGAAGGTTCTATGAGTCCAGATAATAA
TTAGTTTTGACAGCTAAAGAAAAGCAACTGTTCCTGAACTAGAACTGGATGATACTTTTG
AGCAAAAGAAATGAAATAGTTCGGAGGATGACCTTGAAAAGGCAATATTTACTTATGGTT
ATGAGATTGTGCAAACACTCATTGTTGATACCAAACCAGATGAAAAGGATTAAAAGAGCT
ATGAATGAAATCAATGCTGCTGCGCGTTGCGGCAAATAAGAAGGCAGATGCAACGAAAAT
CATTCAGATCAAAATGGCTGAGGGCGAGATATAGCAGGGGAGACCCAGACCCCCACTATA
AGGATTTTATTAAAAACAAAAGGAACTTCACCAATACAAAGAGGGAGGGGGGGACAAGAG
GAGTCAGGGAGCTATGACTAGGAGAACTGCACAGGCTACGGAGAAACAACACCAACAAAG
TTAAGCTAGTCCAATAAGAAGGAAGAGTAAACTAGGTACTCCTTCCGTTCTTTTCTATTT
GTCTTGTTTTAGTTCAAAAATGAACTAACAGGTAACAAATATTCGAGAACGAAGGTAGTA
TTTTAGAGTGGCAGAAGCAAGACCAACAAAGTTAAGCTAGTCCAGTATAATAAGAAGGAA
GAGGAAACTAGGTATTTGAGACTGGCAGAAGCGAAAGACTGCAACTGAGCTTGCTATAGG
AAACATTGCTTCTAATTTGTTGAAGGAAGGACGACCACGATTAAAAATGAAGTTATTCCT
TTGCT