Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013989_T034
CDS Infomation

cds chromosome:B73_RefGen_v4:5:27676224:27687663:1 gene:Zm00001d013989 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA-processing protein 40C
Sequence

ATGTTTAATGCTGCAGGACATGGAGGTCAAGTCACTGAGCAGCTGGAGGACAATAGAAAT
ACTGGAGTTCAGGATTCAGATGCATGGTCTGCTCACAAAACTGAAACTGGTGTTGTATAT
TATTACAATGCTTTGACAGGAGAGTCGACTTACCAGAAACCAACCGGTTATAAGGGGGAG
GTATTTGCACAGAGGAATAACTTTATCAACTTGAGAAGGTTGCAACAGAACCAGTTCCAG
TTTCTTGGTATGTCTGGTCTCATGGATAAATTGGCTGGTACTAACTGGAGCATAGTAACT
ACAAGTGATGGAAAGAAATATTATTATGATAACAAACAAAAGGTTAGCAGCTGGCAACTT
CCGCCAGAGGTGTGTGAGATCCTCAAGAATGCGGAATCTGGTTCCTTAAAAGAAGGTTCA
ACTTCACTGCAGGATGCTGCAACTATAGAGAATAAGGGAGTAATAAGCATTGATGCAAGT
ACTCCTGCCATACAGACAGGTGGCCGTGATTCGTTGCCACTTCGGCAAACAGTTGCCCCT
GCATCGCCATCTCCATTGGATTTAATAAAGAAGAAATTGCAGGATGCTGGTGCTTCCAGT
GCGCCTTCAGCTCTGGCTACTTCATCTGCTACCTCTGAATTGAATGGATCCAAACCAGCT
GATGCTGCACTTAAGGGGCAACTAGTGGCGAATAATGGTGAGAAATTAAAAGATAACAAT
GGTGATGTGAATATCTCAGATTCTTCTTCAGATTCAGATGATGAGGAACATGGACCAAGT
AAAGAGGACTGCATTCGTCAGTTTAAGGTGATGCTAAAGGAACGAGGAGTTGCACCATTT
TCGAAGTGGGAGAAGGAACTTCCAAAAATAGTTTTTGACCCACGCTTTAAGGCTATTCCT
AGTCACTCAACAAGGCGGGCTATATTTGACCACTATGTTCGCACACGTGCTGAAGAGGAG
CGGAAAGAGAAAAGAGCTGCCCTGAAGGCTGCAGTAGAGGCGTATAAAGAATTACTTGAA
GAAGCATCCGAGGACATCAACCAGAAAACAGACTACCAAGAATTCAAAAGAAAATGGGGT
GCTGATACAAGGTTTGAAGCCTTGGATCGAAAGGAAAGGGAGATTCTTTTTAGTGAGAAA
CTTCACAGTAATTTGATACTATTTATTGATAATATAGAAATAAATAAATCGGAGTCTAGT
GGATGGTTCTGGCATGTGGAATTGTGGATTGTTAATTTTGACATACATACTACTATCCAA
ACTCCAAAGGTTAAAGAAAATTTCCGTAGTGATCCAAGGTACAAAGCCATGAAGCATGAA
GAAAGGGAGACTATATTTAATGAATACATAGTGGAACTAAAATCTGCTGAACAGGAAGCA
GAGCAAGCTGCCAAGGCCAAAGTGGATGAGCAAGCCAAGTTAAAGGAGAGGGAACGTGAA
ACACGTAAAAGGAAAGAAAGAGAGGAGCAGGAGATGGAAAGAGTAAAAATGAAGATACGT
AGAAAAGAGGCTGTGTCATCATACCAAGCTTTACTTGTTGAAATGATTAAGGATCCCAAG
GCATCGTGGACTGAATCCAAACCAAAACTTGAAAAAGATCCACAAGGTCGTGCTCGAAAT
CCTGACTTAGGCCAAGGTGATGCAGAAAAGTTGTTTCGTGACCATGTCAAGGACCTATAT
GAGCGGTGTGTACGTGATTTCCGGGCACTTCTATCTGAGGTTATCACTCCAGAGGTAGCA
GCACGGACAACAGCTGAGGGGAAGACGGCAATCAACTCCTGGAGTGAGGCAAAAGGTCAT
CTAAGATCTGATCTAAGGTACAATAAGCTACCGAGTAAAGACAAAGAGTCTATTTGGCGG
CGCTATGCTGATGACTTGACGAGGAAACTCAGACAATCAGACACGAAGGAGAAGGACAAA
TCGGATACAGATGGGAAACAACCTAGGTCCTCTGATCCACCTAGGCGGAGGTAG

Peptide Sequence

PEP ID

Zm00001d013989_P034
PEP Infomation

pep chromosome:B73_RefGen_v4:5:27676224:27687663:1 gene:Zm00001d013989 transcript:Zm00001d013989_T034 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA-processing protein 40C
Sequence

MFNAAGHGGQVTEQLEDNRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQKPTGYKGE
VFAQRNNFINLRRLQQNQFQFLGMSGLMDKLAGTNWSIVTTSDGKKYYYDNKQKVSSWQL
PPEVCEILKNAESGSLKEGSTSLQDAATIENKGVISIDASTPAIQTGGRDSLPLRQTVAP
ASPSPLDLIKKKLQDAGASSAPSALATSSATSELNGSKPADAALKGQLVANNGEKLKDNN
GDVNISDSSSDSDDEEHGPSKEDCIRQFKVMLKERGVAPFSKWEKELPKIVFDPRFKAIP
SHSTRRAIFDHYVRTRAEEERKEKRAALKAAVEAYKELLEEASEDINQKTDYQEFKRKWG
ADTRFEALDRKEREILFSEKLHSNLILFIDNIEINKSESSGWFWHVELWIVNFDIHTTIQ
TPKVKENFRSDPRYKAMKHEERETIFNEYIVELKSAEQEAEQAAKAKVDEQAKLKERERE
TRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKASWTESKPKLEKDPQGRARN
PDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTAEGKTAINSWSEAKGH
LRSDLRYNKLPSKDKESIWRRYADDLTRKLRQSDTKEKDKSDTDGKQPRSSDPPRRR

Transcript Sequence

Transcript ID

Zm00001d013989_T034
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:27676224:27687663:1 gene:Zm00001d013989 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA-processing protein 40C
Sequence

ATGTTTAATGCTGCAGGACATGGAGGTCAAGTCACTGAGCAGCTGGAGGACAATAGAAAT
ACTGGAGTTCAGGATTCAGATGCATGGTCTGCTCACAAAACTGAAACTGGTGTTGTATAT
TATTACAATGCTTTGACAGGAGAGTCGACTTACCAGAAACCAACCGGTTATAAGGGGGAG
GTATTTGCACAGAGGAATAACTTTATCAACTTGAGAAGGTTGCAACAGAACCAGTTCCAG
TTTCTTGGTATGTCTGGTCTCATGGATAAATTGGCTGGTACTAACTGGAGCATAGTAACT
ACAAGTGATGGAAAGAAATATTATTATGATAACAAACAAAAGGTTAGCAGCTGGCAACTT
CCGCCAGAGGTGTGTGAGATCCTCAAGAATGCGGAATCTGGTTCCTTAAAAGAAGGTTCA
ACTTCACTGCAGGATGCTGCAACTATAGAGAATAAGGGAGTAATAAGCATTGATGCAAGT
ACTCCTGCCATACAGACAGGTGGCCGTGATTCGTTGCCACTTCGGCAAACAGTTGCCCCT
GCATCGCCATCTCCATTGGATTTAATAAAGAAGAAATTGCAGGATGCTGGTGCTTCCAGT
GCGCCTTCAGCTCTGGCTACTTCATCTGCTACCTCTGAATTGAATGGATCCAAACCAGCT
GATGCTGCACTTAAGGGGCAACTAGTGGCGAATAATGGTGAGAAATTAAAAGATAACAAT
GGTGATGTGAATATCTCAGATTCTTCTTCAGATTCAGATGATGAGGAACATGGACCAAGT
AAAGAGGACTGCATTCGTCAGTTTAAGGTGATGCTAAAGGAACGAGGAGTTGCACCATTT
TCGAAGTGGGAGAAGGAACTTCCAAAAATAGTTTTTGACCCACGCTTTAAGGCTATTCCT
AGTCACTCAACAAGGCGGGCTATATTTGACCACTATGTTCGCACACGTGCTGAAGAGGAG
CGGAAAGAGAAAAGAGCTGCCCTGAAGGCTGCAGTAGAGGCGTATAAAGAATTACTTGAA
GAAGCATCCGAGGACATCAACCAGAAAACAGACTACCAAGAATTCAAAAGAAAATGGGGT
GCTGATACAAGGTTTGAAGCCTTGGATCGAAAGGAAAGGGAGATTCTTTTTAGTGAGAAA
CTTCACAGTAATTTGATACTATTTATTGATAATATAGAAATAAATAAATCGGAGTCTAGT
GGATGGTTCTGGCATGTGGAATTGTGGATTGTTAATTTTGACATACATACTACTATCCAA
ACTCCAAAGGTTAAAGAAAATTTCCGTAGTGATCCAAGGTACAAAGCCATGAAGCATGAA
GAAAGGGAGACTATATTTAATGAATACATAGTGGAACTAAAATCTGCTGAACAGGAAGCA
GAGCAAGCTGCCAAGGCCAAAGTGGATGAGCAAGCCAAGTTAAAGGAGAGGGAACGTGAA
ACACGTAAAAGGAAAGAAAGAGAGGAGCAGGAGATGGAAAGAGTAAAAATGAAGATACGT
AGAAAAGAGGCTGTGTCATCATACCAAGCTTTACTTGTTGAAATGATTAAGGATCCCAAG
GCATCGTGGACTGAATCCAAACCAAAACTTGAAAAAGATCCACAAGGTCGTGCTCGAAAT
CCTGACTTAGGCCAAGGTGATGCAGAAAAGTTGTTTCGTGACCATGTCAAGGACCTATAT
GAGCGGTGTGTACGTGATTTCCGGGCACTTCTATCTGAGGTTATCACTCCAGAGGTAGCA
GCACGGACAACAGCTGAGGGGAAGACGGCAATCAACTCCTGGAGTGAGGCAAAAGGTCAT
CTAAGATCTGATCTAAGGTACAATAAGCTACCGAGTAAAGACAAAGAGTCTATTTGGCGG
CGCTATGCTGATGACTTGACGAGGAAACTCAGACAATCAGACACGAAGGAGAAGGACAAA
TCGGATACAGATGGGAAACAACCTAGGTCCTCTGATCCACCTAGGCGGAGGTAGCTTGTA
GTAACAGTCACTTGTACTTCCTAGGTGCTGCTCCTATATTTCTTACTGTTGATAGTTAAG
GGTCTGCTCGCACTCGTCTGCAACATTTGAATAGTCACTGGCTCACTGCCACTTTTGATA
CTGAGAGTTTCTGTGTTGTAGGGTGTTTTCCTTGCAAATGTTTTTCCCGTTCTGGATCAG
ATGATATATTTTTGCAGTATGAGTCTGACATTGCAGTACCGTGCCAAGTTGCGTCTCCCA
TGCTCTCAGGTCTCAGCCTTCCATCTTTCAAACTTCAAGCC