Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013983_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:27294560:27298016:-1 gene:Zm00001d013983 gene_biotype:protein_coding transcript_biotype:protein_coding description:LysM domain containing protein

Sequence

ATGATCCGCCCCCATTTGCCCAAGGACCCGGCCTTCCCGCGCACCAATGGGTCCTTGGAC
GGCGGGGCCCGCGGCCTCGGCGAGATCGAGGAGGTGGGCGCTGCGGCCACCGTAGCCGTC
GAACAGTCCCCCTCGCAGTCCTCGTCCCCGTCGGCGTCGTCGCCGGCGGCGGCGATGTCA
TCGTGCGGGCAGTACATGCTACACCGGGTGCGCAAGCTGGACACCCTAGCGGGCGTCGCC
ATCAAGTATGGTGTCGAGGTAGCCGACATTAAGAGGCTGAACGGCCTCTCAACTGATCTC
CAGATGTTTGCACACAAGACACTGCGGATTCCACTCCCAGGGAGGCACCCTCCGTCGTCT
TACCAGCAGAATGGTTCATATGAGAGTGACGACAGGGAATGTACTCCACGTCGCATTCAT
GATGATATCTTGGAATCAATATTGAAAACACCAAATTCCAAAGTTTCGCCAGCTATGAGT
CTTCTGCAGGGATACTATGGCCTTGAACCACCTCCAAAGAGAGATCAAACAAGTGAGGGC
ACTGAGATGGCAGTTCACAGTAAAGGCAAATCTGCTTTTTTGGATGTTGAGCCGTGGCTG
GAGCCACCAAATTCCGACCCCTTCCCTCTTCAGAATAGGAAAAACAGAAGCTTGATGATA
GGTTCTTTTCTTGATGGTGGTACTGATGAGAACGGTGACAGTGAAAGGTTCATAAGACGG
CGCCAGAAAGCTGATGGTGAGCTGTTACCGAGGGAGGAAAATGGTGGTGACTTTCTGGCA
AGCGTTGGAAAAGGCTTGGCTCTGAGGCCAAAGTCTAGCAATCGACCAGACATGAACAAG
AGCCAGCAGAATCTTTTTGCAATGGCGGAGCCTTTGTTTGGCAATGGTTTGCAAACTGTA
AGGAAATCATCCAGCACTCCGGAGTTCCAGGAGCCAGAGACCAACACCAGTTCATCCATA
TGGTCAGCGAGCAAGTGGAGCATAAATACAGATGCTTTTGCTCTTCCTCTCCCGATCCCT
CGTTTTGACAACATTCCAAAGCCCATTGCTGCTTGGAGAAACAAGCCGGCTCGCGACTAA

Peptide Sequence

PEP ID

Zm00001d013983_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:27294560:27298016:-1 gene:Zm00001d013983 transcript:Zm00001d013983_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:LysM domain containing protein

Sequence

MIRPHLPKDPAFPRTNGSLDGGARGLGEIEEVGAAATVAVEQSPSQSSSPSASSPAAAMS
SCGQYMLHRVRKLDTLAGVAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPGRHPPSS
YQQNGSYESDDRECTPRRIHDDILESILKTPNSKVSPAMSLLQGYYGLEPPPKRDQTSEG
TEMAVHSKGKSAFLDVEPWLEPPNSDPFPLQNRKNRSLMIGSFLDGGTDENGDSERFIRR
RQKADGELLPREENGGDFLASVGKGLALRPKSSNRPDMNKSQQNLFAMAEPLFGNGLQTV
RKSSSTPEFQEPETNTSSSIWSASKWSINTDAFALPLPIPRFDNIPKPIAAWRNKPARD

Transcript Sequence

Transcript ID

Zm00001d013983_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:27294560:27298016:-1 gene:Zm00001d013983 gene_biotype:protein_coding transcript_biotype:protein_coding description:LysM domain containing protein

Sequence

GTGCGCCACGTTTCTAGCGTCCCCTTCTTCCTTCTTCCCCGAGCCGCGTCAAAGGAACCA
AACCTGTGAGAGCTCCCCTCTCCCCTCCCCTCCCCTCCCACCCTTCCCTTCCTCTCTCCT
CGTCGATTCCTCGCACTATCTCCTATTCTGCACCCCCAGCCGCCGGCACCGACGGCGATT
CCACGGGGCGCCGCCCCCGAATCTGCGCCCTCCGCGCTTAGATCTCCCCCCTCCGCGCTT
CCGGATGTCATGATCCGCCCCCATTTGCCCAAGGACCCGGCCTTCCCGCGCACCAATGGG
TCCTTGGACGGCGGGGCCCGCGGCCTCGGCGAGATCGAGGAGGTGGGCGCTGCGGCCACC
GTAGCCGTCGAACAGTCCCCCTCGCAGTCCTCGTCCCCGTCGGCGTCGTCGCCGGCGGCG
GCGATGTCATCGTGCGGGCAGTACATGCTACACCGGGTGCGCAAGCTGGACACCCTAGCG
GGCGTCGCCATCAAGTATGGTGTCGAGGTAGCCGACATTAAGAGGCTGAACGGCCTCTCA
ACTGATCTCCAGATGTTTGCACACAAGACACTGCGGATTCCACTCCCAGGGAGGCACCCT
CCGTCGTCTTACCAGCAGAATGGTTCATATGAGAGTGACGACAGGGAATGTACTCCACGT
CGCATTCATGATGATATCTTGGAATCAATATTGAAAACACCAAATTCCAAAGTTTCGCCA
GCTATGAGTCTTCTGCAGGGATACTATGGCCTTGAACCACCTCCAAAGAGAGATCAAACA
AGTGAGGGCACTGAGATGGCAGTTCACAGTAAAGGCAAATCTGCTTTTTTGGATGTTGAG
CCGTGGCTGGAGCCACCAAATTCCGACCCCTTCCCTCTTCAGAATAGGAAAAACAGAAGC
TTGATGATAGGTTCTTTTCTTGATGGTGGTACTGATGAGAACGGTGACAGTGAAAGGTTC
ATAAGACGGCGCCAGAAAGCTGATGGTGAGCTGTTACCGAGGGAGGAAAATGGTGGTGAC
TTTCTGGCAAGCGTTGGAAAAGGCTTGGCTCTGAGGCCAAAGTCTAGCAATCGACCAGAC
ATGAACAAGAGCCAGCAGAATCTTTTTGCAATGGCGGAGCCTTTGTTTGGCAATGGTTTG
CAAACTGTAAGGAAATCATCCAGCACTCCGGAGTTCCAGGAGCCAGAGACCAACACCAGT
TCATCCATATGGTCAGCGAGCAAGTGGAGCATAAATACAGATGCTTTTGCTCTTCCTCTC
CCGATCCCTCGTTTTGACAACATTCCAAAGCCCATTGCTGCTTGGAGAAACAAGCCGGCT
CGCGACTAATAAACTGCTACGCGCATGATTTTTCCTGAACTCCAGGAGGCCCAGAAAGCG
GGAAGTGTTCATGAAGGAGCTTTACATTAGGTTGGCACCAGCCTCTACAGCTTTGGAAGC
AGAGCAGAGCAGGACTGTAGTATTGGCCCCTGCTAGCTAGAACATTCCGAAGATCAGACG
CATGGCGTCTATGTTTCCAGACGGCATCTAGACTAGGTTTACATGATTCTCGTGTTATAT
TGGGCATGTTGCGCCAAGAGTAGCAACGTTAATATTCGGTCATATAAATTATAGATGCTA
GATGACATAGAGGAGATATATTTGAGGAGGATATATTTTTTTTCTGTACACAATGAGAAA
ATGTAGAGCATCAAAGGGCGGTTATATATGTGTTGTATGTGTGATTCCATACCCTAATAT
AGAGGTGGTTGGCTTCGTTTAACTCCAGATTATTTCTTTTTCTCC