Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013923_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:24943241:24945641:1 gene:Zm00001d013923 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGGCCTCTCTCTTCGCCCCGGCACGCCGCCTGCTCAGCCTTGGCCGCCGCCGCCACCGC
CGCGGAGGACAGCTCCCCGTGCCCCCCTCGTCTCGTAGCAACAGCGCGGAGGAGCGACCA
CCGCCGGCGCGGTCGCTGAGCCTTGATTCCACGCTGTTTCCGCTGGGCCACCCGAGCACA
CTCCTTGTGCCGGAGATCGAACTGTGGGCGGCGCGGCCCAGAAACCTCCTCCGAGCCGTT
GAGCTCCAACGCATCGTCAAGGAGCTCCGCAAGCGCCGCCGCCACCGCCAGGCCCTCGAG
GTCTCTGAGTGGATGAGTCTCAAGGGTCACGTCAAATTTCTGCCAAAGGATCATGCTATT
CACCTGGATTTAATTGGTCAAATCCATGGGGTTGAAGCAGCAGAGACCTACTTCAATAAC
CTATCTGACAAAGATAAGACAGAGAAACCCTATGGTGCACTTCTCAACTGCTACACACGA
GAACTCTTGGTCGACAAAGCGTTGGCCCATTTTCGGAATATGAAAGAGCTGGGTTTCGTG
TTCTCCACGCTCCCCTACAATGACCTCATGGGCCTCTATACCAGAATAGGGCAGCACGAG
AGGGTCCCTTCGGTGATGGCAGAAATGAAAAGCAATGGGATTGTTCCTGATAATTTTAGC
TACAGAATATGCATAAATTCTTATGGCACAAGAGCAGACTTTTTTGGGCTGGAGAACACC
CTGGAGGAGATGGAATGTGAGCCTCAGATTGTTGTTGACTGGAATACCTATGCTGTTGTG
GCAAGCAACTACATTAAGGGTGACCTAAGGGAGAAGGCATACTCTGCGTTAAGCAAAGCA
GAAGCAAAACTGGATAAACAGGATCCTGATGCATATAGGCACCTGATTTCCCTGTATGGC
AACCTTGGGGACAAATCAGAAGCCAAGAGGCTATGGGCGGTGCAAATGTCGAACTGTAAG
AGGTACATTAACAGGGACTACATGAATATGCTTTCGGTGCTCGTGAAGCTTGATGAGATC
ACAGAAGCTGAAGACTTGCTGAAGGAGTGGGAGTCTAGCCAAAACTCATTCGACTTCCGT
GTCCCAAACGTCCTGCTCACAGGGTACCGCCAGAAGGCCTTGCTGGACAAGGCCGAGATG
CTGCTCGACGGCTTCTTGAAGAAGGGAAAGACGCCTCCTTCGACCAGCTGGGGGATTGTG
GCAATCGGCTATGCGGAGAAAGGTGATGTGGCGAAAGCTTATGAGATGACCAAGAACGCC
CTCTCTGTGCACGCCCCCAATACTGGCTGGATCCCTAGGCCTTCCATGCTTGAGATGATA
CTTAAGTACCTCGGAGACGAGGGGGAGGTCAAGGATGTCGAAGCTTTCGTTAGTCTGCTG
AAAGCTGCTGTGCCAGTGGACTCTGATATGACCGAGGCTTTGTCGAGGGCTCGGGCTCGT
GCGAGGGAAGAAAGGAAGGCTGAAGAGGCAACGGAAGCTCCTCGCGGGGATGTTATTGCC
TGA

Peptide Sequence

PEP ID

Zm00001d013923_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:24943241:24945641:1 gene:Zm00001d013923 transcript:Zm00001d013923_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

MASLFAPARRLLSLGRRRHRRGGQLPVPPSSRSNSAEERPPPARSLSLDSTLFPLGHPST
LLVPEIELWAARPRNLLRAVELQRIVKELRKRRRHRQALEVSEWMSLKGHVKFLPKDHAI
HLDLIGQIHGVEAAETYFNNLSDKDKTEKPYGALLNCYTRELLVDKALAHFRNMKELGFV
FSTLPYNDLMGLYTRIGQHERVPSVMAEMKSNGIVPDNFSYRICINSYGTRADFFGLENT
LEEMECEPQIVVDWNTYAVVASNYIKGDLREKAYSALSKAEAKLDKQDPDAYRHLISLYG
NLGDKSEAKRLWAVQMSNCKRYINRDYMNMLSVLVKLDEITEAEDLLKEWESSQNSFDFR
VPNVLLTGYRQKALLDKAEMLLDGFLKKGKTPPSTSWGIVAIGYAEKGDVAKAYEMTKNA
LSVHAPNTGWIPRPSMLEMILKYLGDEGEVKDVEAFVSLLKAAVPVDSDMTEALSRARAR
AREERKAEEATEAPRGDVIA

Transcript Sequence

Transcript ID

Zm00001d013923_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:24943241:24945641:1 gene:Zm00001d013923 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

GCCCCACGCCCCACGGACTACGGTAAGCCAGCGGACGAGCCGCCATCCGCCACGCCATGG
CCTCTCTCTTCGCCCCGGCACGCCGCCTGCTCAGCCTTGGCCGCCGCCGCCACCGCCGCG
GAGGACAGCTCCCCGTGCCCCCCTCGTCTCGTAGCAACAGCGCGGAGGAGCGACCACCGC
CGGCGCGGTCGCTGAGCCTTGATTCCACGCTGTTTCCGCTGGGCCACCCGAGCACACTCC
TTGTGCCGGAGATCGAACTGTGGGCGGCGCGGCCCAGAAACCTCCTCCGAGCCGTTGAGC
TCCAACGCATCGTCAAGGAGCTCCGCAAGCGCCGCCGCCACCGCCAGGCCCTCGAGGTCT
CTGAGTGGATGAGTCTCAAGGGTCACGTCAAATTTCTGCCAAAGGATCATGCTATTCACC
TGGATTTAATTGGTCAAATCCATGGGGTTGAAGCAGCAGAGACCTACTTCAATAACCTAT
CTGACAAAGATAAGACAGAGAAACCCTATGGTGCACTTCTCAACTGCTACACACGAGAAC
TCTTGGTCGACAAAGCGTTGGCCCATTTTCGGAATATGAAAGAGCTGGGTTTCGTGTTCT
CCACGCTCCCCTACAATGACCTCATGGGCCTCTATACCAGAATAGGGCAGCACGAGAGGG
TCCCTTCGGTGATGGCAGAAATGAAAAGCAATGGGATTGTTCCTGATAATTTTAGCTACA
GAATATGCATAAATTCTTATGGCACAAGAGCAGACTTTTTTGGGCTGGAGAACACCCTGG
AGGAGATGGAATGTGAGCCTCAGATTGTTGTTGACTGGAATACCTATGCTGTTGTGGCAA
GCAACTACATTAAGGGTGACCTAAGGGAGAAGGCATACTCTGCGTTAAGCAAAGCAGAAG
CAAAACTGGATAAACAGGATCCTGATGCATATAGGCACCTGATTTCCCTGTATGGCAACC
TTGGGGACAAATCAGAAGCCAAGAGGCTATGGGCGGTGCAAATGTCGAACTGTAAGAGGT
ACATTAACAGGGACTACATGAATATGCTTTCGGTGCTCGTGAAGCTTGATGAGATCACAG
AAGCTGAAGACTTGCTGAAGGAGTGGGAGTCTAGCCAAAACTCATTCGACTTCCGTGTCC
CAAACGTCCTGCTCACAGGGTACCGCCAGAAGGCCTTGCTGGACAAGGCCGAGATGCTGC
TCGACGGCTTCTTGAAGAAGGGAAAGACGCCTCCTTCGACCAGCTGGGGGATTGTGGCAA
TCGGCTATGCGGAGAAAGGTGATGTGGCGAAAGCTTATGAGATGACCAAGAACGCCCTCT
CTGTGCACGCCCCCAATACTGGCTGGATCCCTAGGCCTTCCATGCTTGAGATGATACTTA
AGTACCTCGGAGACGAGGGGGAGGTCAAGGATGTCGAAGCTTTCGTTAGTCTGCTGAAAG
CTGCTGTGCCAGTGGACTCTGATATGACCGAGGCTTTGTCGAGGGCTCGGGCTCGTGCGA
GGGAAGAAAGGAAGGCTGAAGAGGCAACGGAAGCTCCTCGCGGGGATGTTATTGCCTGAG
CTGGTTGTCGGTGTTTCAGCGCTGCTGTCTGATCCTATGTGCTAGTAGTAGAATAAATTA
ATACTGTAGTTAGTTATAATCCTTCCTTTGATAGCTCCTTGTTTTCATTAGCTATAAGTT
TTATGTTGGTGTTTGGTTCGCCACTTCGTAATAACTATAGTTATCATATCAATGATGCGA
AGCGATACCCGTTTTGGCTGAAC