Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013919_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:24817151:24819264:-1 gene:Zm00001d013919 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

ATGACGCCGGCGAGCGTGGTCGCCATGCCCAGGAGCGTCCCGTTGGCCTTGGCGTTGGCG
CCGTTCCCGGCGCCCGCTAGGGCCGAGGAGAGGAGGAACGCCCGGTCCTTCAGGCCCTCG
GCGTGCGGCGCCGGGGACGACCAGAAGCCGCCGTCCATGGCCGCGATGCCGGCGTCGCTG
CGCACCATCCAGACCAGGAGGAAGCAGGCGGCGGCGCAGCGAGGGGTGCCGCGGGCGACG
GCCACGAGCGCGGCCGGGTGCGCCGTGGCGGCTCTTGTCAAGGCCATGGAGGCCGTCCAG
GGCGCGGCGGCTGGGGGCGCCACCGAGGCCGCGCGCGGCGCCGGGGACGCCGTGGCGTGG
GTCTTCAGCAAGGTTCACCTCCAGTCGCCGGACCTCGCCGTCGGGCTGCCGCTGCTCGGG
ATGGTCGCCTGCTGCCTCGGCACGATCGTGGAGGCGGCGGAAATGGGCCGCGTGGAGGCG
AAGAAGCCCGAGGCGTCGTCGGGCGACGCAGAGGCCGACCACCCCGACGGCAACGGGGAC
GCGGCCGCCGAGGAACCCGAGGACGACGACGACGACATGCCGGAGCTGGTGGAAGCGGAC
ATCGAGAAGGAGCTGTGGGGCCAGATCGGCATCTTGCATGGCGGCGGCCTATTCGGGGAC
AGCTCCTACGTCCATGAGGAACTCGACGAGGAAGAGATCAAGGAGATCGACAGCGCCCGC
GCGCGGCGCCGGAAGGCGGCGTACGAGAGGGCCATCGCCTCAGGCGGCGCCAACTCGCTC
ATCATGTCCAACTACGCGCAGCTCCTCTACGAGTTCGACAAGGACATCGACAGGGCGGAG
ATGTACTTCAAGCAGGCGGTGGCCGCCGAGCCAGCGGACGGGGAAGCGATGCGGAGGTAC
GGCATGTTCCTCTGGCACGCCCGCGGCGACATTGGCGGCGCGGAGGACATGTTTACCGGC
GCCATTGACGAGGAGCCCGAGAGCAGCCACCACCGGAGCAGCTACGCGTGGTTCCTATGG
ATGACCGGCGGCGTCGAGACCTGCCTCATCGACACCACCGGAAAGCAGAACAATGGCAAC
GACGTCGAATGA

Peptide Sequence

PEP ID

Zm00001d013919_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:24817151:24819264:-1 gene:Zm00001d013919 transcript:Zm00001d013919_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

MTPASVVAMPRSVPLALALAPFPAPARAEERRNARSFRPSACGAGDDQKPPSMAAMPASL
RTIQTRRKQAAAQRGVPRATATSAAGCAVAALVKAMEAVQGAAAGGATEAARGAGDAVAW
VFSKVHLQSPDLAVGLPLLGMVACCLGTIVEAAEMGRVEAKKPEASSGDAEADHPDGNGD
AAAEEPEDDDDDMPELVEADIEKELWGQIGILHGGGLFGDSSYVHEELDEEEIKEIDSAR
ARRRKAAYERAIASGGANSLIMSNYAQLLYEFDKDIDRAEMYFKQAVAAEPADGEAMRRY
GMFLWHARGDIGGAEDMFTGAIDEEPESSHHRSSYAWFLWMTGGVETCLIDTTGKQNNGN
DVE

Transcript Sequence

Transcript ID

Zm00001d013919_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:24817151:24819264:-1 gene:Zm00001d013919 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

GCCGGCTCCGGCTGTCCGCATTCCGCAAGCTAGATCGCCATTCCACTCCGCCTTCGGTTG
GAAGCTCCGTTCCTAACCAACACAACACAACACCCTTCTGTTTGAGAGAGTCTCTTGCGT
TGCGTTGGCGGTCGGTCGGTGGGTCGCGAGGATGACGCCGGCGAGCGTGGTCGCCATGCC
CAGGAGCGTCCCGTTGGCCTTGGCGTTGGCGCCGTTCCCGGCGCCCGCTAGGGCCGAGGA
GAGGAGGAACGCCCGGTCCTTCAGGCCCTCGGCGTGCGGCGCCGGGGACGACCAGAAGCC
GCCGTCCATGGCCGCGATGCCGGCGTCGCTGCGCACCATCCAGACCAGGAGGAAGCAGGC
GGCGGCGCAGCGAGGGGTGCCGCGGGCGACGGCCACGAGCGCGGCCGGGTGCGCCGTGGC
GGCTCTTGTCAAGGCCATGGAGGCCGTCCAGGGCGCGGCGGCTGGGGGCGCCACCGAGGC
CGCGCGCGGCGCCGGGGACGCCGTGGCGTGGGTCTTCAGCAAGGTTCACCTCCAGTCGCC
GGACCTCGCCGTCGGGCTGCCGCTGCTCGGGATGGTCGCCTGCTGCCTCGGCACGATCGT
GGAGGCGGCGGAAATGGGCCGCGTGGAGGCGAAGAAGCCCGAGGCGTCGTCGGGCGACGC
AGAGGCCGACCACCCCGACGGCAACGGGGACGCGGCCGCCGAGGAACCCGAGGACGACGA
CGACGACATGCCGGAGCTGGTGGAAGCGGACATCGAGAAGGAGCTGTGGGGCCAGATCGG
CATCTTGCATGGCGGCGGCCTATTCGGGGACAGCTCCTACGTCCATGAGGAACTCGACGA
GGAAGAGATCAAGGAGATCGACAGCGCCCGCGCGCGGCGCCGGAAGGCGGCGTACGAGAG
GGCCATCGCCTCAGGCGGCGCCAACTCGCTCATCATGTCCAACTACGCGCAGCTCCTCTA
CGAGTTCGACAAGGACATCGACAGGGCGGAGATGTACTTCAAGCAGGCGGTGGCCGCCGA
GCCAGCGGACGGGGAAGCGATGCGGAGGTACGGCATGTTCCTCTGGCACGCCCGCGGCGA
CATTGGCGGCGCGGAGGACATGTTTACCGGCGCCATTGACGAGGAGCCCGAGAGCAGCCA
CCACCGGAGCAGCTACGCGTGGTTCCTATGGATGACCGGCGGCGTCGAGACCTGCCTCAT
CGACACCACCGGAAAGCAGAACAATGGCAACGACGTCGAATGAACCGCAGCCCTTCGATC
GGAATTCGGAAAAAAAAACAATCAAAGAAGACAGGAAAATACCTACTACCTTGCCACCGG
CAAGTGCCCGGCGGCGGGCCGGCCATTTAGATGGTGCGTCTAGGTATCGCCGTGCCGCGC
ATGCTCGCCAATGGCTATACTTCCATGAGCAGCATCGGCCCTTGTAGTGGCCAGTTTTCC
AGTATACTAGTAGATGGATGCGCATCAAGGAGCCAACCCAGGACCACGACCAGGAGGCAA
ACAATAATGTTTGGCAAAGAAAAGTTAGGGCATGATGCGATACTAGCACTAGTATTATGT
GGAATAAAGCACTAGTAGATAGTAATGTTTTTATATATAACTGCGGCGATGTGAACAGTA
ATAATAATATATGCGTGTGGGAACCATATATAGTGCTTCTATGTATATGGTTACATTGCT
GCTGATATTCTTGAGACATACAGTGGTTTAATTTGTACATGCATAGATATGGATAAAATC
GGCGTCACGTCTTTGATCGCGTCTTGTCATGGCGGCTCTATAGACAGACAGATTAACATG
GACCATGGGGATGAACTCTTGGTGAATTAATCACCTACAGCCCAGCTCCAATCTCGCATC
TGGGCTGATACTGGTGTTCGTGCATAGCTTCTGAAGGTCAATGTAGCCGATGATCGTGTC
CTCAAACACGACATCGTCCATCTTTGCATCATCGAAGGTCGATCCTGACAAGACCGTGTT
CTTGAAGATCGCCCCTGT