Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013887_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:5:23853264:23883050:-1 gene:Zm00001d013887 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MutS type 2
Sequence

ATGGCAGTCACTAGCCTGATGATGTTTGTTGAATCCTTGCAAGTAAACATTAAAGCTGCC
ATGAAACTGGATGAAGGCTCATGTAGTCGATTAACAACACTTACAGAAACAATTTTAGAT
GCTGTCATTAACAAGTCATTAGTGAAATCCATACAAGATATTGTTGATGATGATGGCTCT
GTTAAAGACACTGCAAGCCCTGAGCTGAGACGGTATCGAGAGCAAGTACAGCGTCTAGAA
AACAGGTTATATCAGCTTATGGACAAGTTGATGCGCAATGCTGATGATGAAGCTTCATTG
TCGGAAGTATGCATTGTAAATGGAAGATGCTGCATTAGAACAACCATGGATAATTCTTCA
TTTTTTGATGGATTATTGCTCTCCAGGTCAGATGCTGGAAGCATGATAGAACCAATTGTT
GCTGTTCCGTTAAACGATGAGTTGCAGGAATCAAGAGCATTAGTGGCTAAAGCTGAACTG
GATGTCTTATCAAAACTTACTGATAAGATTCGTCTTGATCTTGATAGCATTCAGAATTTG
CTTCAGGAAACAATTAAACTCGATAAGATCGCAGCTCGTGCAAAATACAGTATTGCATAT
GATGGAACATTTCCTGACCTGTATTTGCCGAACTTTGAGAATGAAACTGTCACTAGTGCT
ACAGGTGGATCTATCAAACAAATTTCCTCAGCTCAACTTCCTAAGAAGGCATGGAAACTG
TATATGCCAAATGCATACCATCCACTACTACTTCAGCGGCATCAGGAAAATATCCATCGT
GCCAAAAGGGATGTTGCAAGTGCCACAGCGGAGATCCGGAGGAGGAGGATATATGGGCAA
GATATTGCAGAAGAAGATCAATTGGCATCAGACCTTGATTCCATGAAACTTAGGGTTTCC
CAACTGGAGAAAGACCAGCCAGTACCAGTAGATTTTATGATTGCTGAAGAAACTACTGTC
TTGGTGATAACTGGCCCAAATACAGGGGGTAAAACAATCAGCTTGAAGACGGTTGGCCTG
GCATCATTGATGGCTAAGATAGGTCTATACATTCTAGCTTCTGAACCAGTAAAAATTCCA
TGGTTCAATGCTGTTTATGCTGACATTGGAGATGAGCAATCTCTGACCCAATCACTCTCT
ACATTTTCTGGACATCTGAAGCAGATTGGTGCCATTCGTGCAGAGTCAACTTCAGAGTCC
TTGGTCCTTTTGGATGAGGTAGGCGCTGGGACAAACCCACTTGAAGGAGCCGCTCTGGGG
ATGTCTCTTTTGGAGTCTTTTGCTGAAGCTGGCTCCTTTCTGACTCTAGCAACAACTCAT
CATGGAGAACTCAAAACACTAAAATACAGCAATAACTCATTTGAGAATGCATGCATGGAA
TTTGATGAAGAGAACCTAAAGCCTACATTCAAGATTCTGTGGGGAATACCAGTTGATAAT
GGACATGGAAAGACTCAAACAAGAATATCAACAACATCTTCAGGAGGCACAATATCTTCT
TATGCAGTCCAAGGAGCTTCATAA

Peptide Sequence

PEP ID

Zm00001d013887_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:5:23853264:23883050:-1 gene:Zm00001d013887 transcript:Zm00001d013887_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MutS type 2
Sequence

MAVTSLMMFVESLQVNIKAAMKLDEGSCSRLTTLTETILDAVINKSLVKSIQDIVDDDGS
VKDTASPELRRYREQVQRLENRLYQLMDKLMRNADDEASLSEVCIVNGRCCIRTTMDNSS
FFDGLLLSRSDAGSMIEPIVAVPLNDELQESRALVAKAELDVLSKLTDKIRLDLDSIQNL
LQETIKLDKIAARAKYSIAYDGTFPDLYLPNFENETVTSATGGSIKQISSAQLPKKAWKL
YMPNAYHPLLLQRHQENIHRAKRDVASATAEIRRRRIYGQDIAEEDQLASDLDSMKLRVS
QLEKDQPVPVDFMIAEETTVLVITGPNTGGKTISLKTVGLASLMAKIGLYILASEPVKIP
WFNAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAESTSESLVLLDEVGAGTNPLEGAALG
MSLLESFAEAGSFLTLATTHHGELKTLKYSNNSFENACMEFDEENLKPTFKILWGIPVDN
GHGKTQTRISTTSSGGTISSYAVQGAS

Transcript Sequence

Transcript ID

Zm00001d013887_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:23853264:23883050:-1 gene:Zm00001d013887 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein MutS type 2
Sequence

ATCACTCGCGAACGCAGGTCGCACTGTCGCAGCATGCTTCGCCTCTCCATCGCCGTCCTC
ACCTCACCTCTCCTCCCCACGTCCGTCCCCGCCGTCCGACCCCATCCGCGCCGCCTACTC
CGCCTCCGTCTGCGCTCCCTCGCCGCCTCCTCCTCGCTCTCGCCGTCCGCCCGCAGCCTC
CGCCTCCTCGAGTGGGGCAAGGTCTGCGACGCCGTCGCCTCCTTCGCCGGCACTGCCCAC
GGCCGCGACGCCACAACGAAACAACTGTGGGAGGTGGAGGATGTGAGCTATGAGCAGAGC
CAGATGCTGCTCCAGGAGACGGAGGCGGCCGTGTTGCTGCTTGACAACGCTGGTGGGGCA
ATGGATTTCTCGGGGTTGGATACAGTTGCGAGTCAGCAATACATAGTGTCTCTGGGGGCG
CTGTGATAAAAGGCCTGGAAGCAATGGCAGTCACTAGCCTGATGATGTTTGTTGAATCCT
TGCAAGTAAACATTAAAGCTGCCATGAAACTGGATGAAGGCTCATGTAGTCGATTAACAA
CACTTACAGAAACAATTTTAGATGCTGTCATTAACAAGTCATTAGTGAAATCCATACAAG
ATATTGTTGATGATGATGGCTCTGTTAAAGACACTGCAAGCCCTGAGCTGAGACGGTATC
GAGAGCAAGTACAGCGTCTAGAAAACAGGTTATATCAGCTTATGGACAAGTTGATGCGCA
ATGCTGATGATGAAGCTTCATTGTCGGAAGTATGCATTGTAAATGGAAGATGCTGCATTA
GAACAACCATGGATAATTCTTCATTTTTTGATGGATTATTGCTCTCCAGGTCAGATGCTG
GAAGCATGATAGAACCAATTGTTGCTGTTCCGTTAAACGATGAGTTGCAGGAATCAAGAG
CATTAGTGGCTAAAGCTGAACTGGATGTCTTATCAAAACTTACTGATAAGATTCGTCTTG
ATCTTGATAGCATTCAGAATTTGCTTCAGGAAACAATTAAACTCGATAAGATCGCAGCTC
GTGCAAAATACAGTATTGCATATGATGGAACATTTCCTGACCTGTATTTGCCGAACTTTG
AGAATGAAACTGTCACTAGTGCTACAGGTGGATCTATCAAACAAATTTCCTCAGCTCAAC
TTCCTAAGAAGGCATGGAAACTGTATATGCCAAATGCATACCATCCACTACTACTTCAGC
GGCATCAGGAAAATATCCATCGTGCCAAAAGGGATGTTGCAAGTGCCACAGCGGAGATCC
GGAGGAGGAGGATATATGGGCAAGATATTGCAGAAGAAGATCAATTGGCATCAGACCTTG
ATTCCATGAAACTTAGGGTTTCCCAACTGGAGAAAGACCAGCCAGTACCAGTAGATTTTA
TGATTGCTGAAGAAACTACTGTCTTGGTGATAACTGGCCCAAATACAGGGGGTAAAACAA
TCAGCTTGAAGACGGTTGGCCTGGCATCATTGATGGCTAAGATAGGTCTATACATTCTAG
CTTCTGAACCAGTAAAAATTCCATGGTTCAATGCTGTTTATGCTGACATTGGAGATGAGC
AATCTCTGACCCAATCACTCTCTACATTTTCTGGACATCTGAAGCAGATTGGTGCCATTC
GTGCAGAGTCAACTTCAGAGTCCTTGGTCCTTTTGGATGAGGTAGGCGCTGGGACAAACC
CACTTGAAGGAGCCGCTCTGGGGATGTCTCTTTTGGAGTCTTTTGCTGAAGCTGGCTCCT
TTCTGACTCTAGCAACAACTCATCATGGAGAACTCAAAACACTAAAATACAGCAATAACT
CATTTGAGAATGCATGCATGGAATTTGATGAAGAGAACCTAAAGCCTACATTCAAGATTC
TGTGGGGAATACCAGTTGATAATGGACATGGAAAGACTCAAACAAGAATATCAACAACAT
CTTCAGGAGGCACAATATCTTCTTATGCAGTCCAAGGAGCTTCATAACAACTTGGAACTG
GCACAAAAGAGCATTGTAGACCACACTTCTGCTCAGAGAAAACGAAAGGCGAGAGTAATT
TCAGAGTATGCTGTTATGGCCCGTTCTATCATTCGTAAGAAGTTTCAGCAGTTCCAAGAA
TCTGCTATAGCTGAAAGAGTGAAAGAAGAAGAGAATGCTGTGAATGATGCCAAATCTGAC
AGAGTGAAGGATCCTATGCCGGCAAATACATCTGCCATTGGAAACATACAGAACATAGAT
ACCAGCTTGGGCATGACAGCCAACGATGATGAAGATGAGGTTCCAGAAGTTGGAGATTCA
GTGTACGTTCCTAAGCTCAAGAATGAAGCTACCGTGGTGAAAATAGATTCGTCCAAAAAT
GAAGTGCAAGTCCAAGCCGGTATGATGAAGCTCAAACTAAAGCTGAAAGATGTTAAGGTT
CAGAAGCGGAAAGTATCCAGATAGAACATCTACACTGTCCTGCACTAGCAGATATTCAGA
TAAATATGCATATGCTGTTTCGTCCAATTCGTACCATTTCATTGGCCTCATTTTCAGCAA
TAATAATAATGTGGTCTTTCAAGT