Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013847_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:22497734:22504273:1 gene:Zm00001d013847 gene_biotype:protein_coding transcript_biotype:protein_coding description:fringe-related protein
Sequence

ATGCCCAAGTCCCACTACGCCGCTTCCCCACCCCCGCACCCGCCGCCGCTCCTCCCGCTC
GCGCTCGTCCCGCCGCGGCAGTGCCCGCTCGTCGCGGCCCTGCTGGCGCTGCTCTCGGTG
CTGCTTGCCACCGCGCTCTGGCTCCTCCTCGTGCTCTCCCCGTCCCAGGGGGCTACCCCC
GCCGCCTCCGAGCGCTCGGTGCTGCCGGATGCGGGAGCGGCCGCGGCCGCGGGCCCCGGC
GCCGCCTCGCCCCTCTCGCTCGGCCACATCGTCTTCGGCATCGCGGGGTCGGCGCATCTC
TGGCCGCGCCGCCGCGAGTACGTCCGCCTGTGGTGGGACCCCGCCGCGATGCGCGGCAAC
GTCTGGCTCGACGCGGGCGCGCCCGCCGCGCCGGGGCCTAGCGCCCCCTGGGAGGGCTCC
CTCCCGCCGATCCGGGTGTCCGAGGACACCTCGCGCTTCAGGTACACCAACCCCACGGGC
CACCCGTCGGGGCTCCGGATCGCGCGCATCGCCGCCGAGGCCGTCCGGCTCGTCGGCAGA
GGGGCGGGCGCGCGCTGGCTCGTGCTCGTCGACGACGACACCGTGCTGTGCGCGGACAAC
CTCGTCGCCGTGCTCAGCAAGTACGACTGGACGGAGATGGTGTACGTCGGGGCGCCGTCC
GAGAGCCACTCCGCCAACACCTACTTCAGCCATAGCATGGCTTTCGGAGGTGGCGGCGTC
GCGCTCAGCTTTCCGCTCGCCGCTGCACTCGCGCAGACGCTCGACGTGTGCATCGAGAGG
TACCCCAAGCTGTATGGAAGCGACGACCGCCTCCATGCCTGCATCACGGAGCTCGGCGTT
CCCCTATCCCGCGAATACGGATTCCACCAGTGGGATATCAGAGGCAATTCTCATGGGTTA
TTGGCATCTCATCCAATTGCTCCTTTCATCAGTATCCACCATGTGGAGCTTGTGGACCCC
ATATACCCTGGATTGAACTCTCTTGAGAGTCTGGAGCTGTTTACAAAGGCTATGAAAATG
GAACCCATGAGCTTCCTGCAGCGTTCAATTTGTTACGATCAAAGCCAAAAGCTTACATTT
GCTATCTCGTTGGGCTATGTTGTTGAAGTATATCCCAATGTTCTTCTTCCGCGTGATTTG
GAGCGATCACAACGTACTTACGTTGCTTATAATAGGATGAGTCAGAGAAATGAATTTGAT
TTTGACACTAGAGATGTCCAGAAATCTTTGTGCAAGAAGCCGATCTTATTTTTCTTGAAG
GATGTCTGGAAGGATGGAAACATAACTAGGGGATCTTATGCACGATCAAGTGCTAGGGAT
GACCTCAAAAGAAAGGTGTTCTGCTTCCGGTCACCCCCTTTACCTGACATAGATGAGATC
CAAGTTTCCTCGTCTCCATTAAGCAAGCGCTGGCATCTGGCACCAAGAAGGTTGTGCAGT
GCACTTAAAGGATCTATTGATGGTACTCTGTTTATGTTTGTTCAGCAATGTGGACGTGGG
ACTTTTGGTTCAGCTTCTGATTCCTTATGA

Peptide Sequence

PEP ID

Zm00001d013847_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:22497734:22504273:1 gene:Zm00001d013847 transcript:Zm00001d013847_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:fringe-related protein
Sequence

MPKSHYAASPPPHPPPLLPLALVPPRQCPLVAALLALLSVLLATALWLLLVLSPSQGATP
AASERSVLPDAGAAAAAGPGAASPLSLGHIVFGIAGSAHLWPRRREYVRLWWDPAAMRGN
VWLDAGAPAAPGPSAPWEGSLPPIRVSEDTSRFRYTNPTGHPSGLRIARIAAEAVRLVGR
GAGARWLVLVDDDTVLCADNLVAVLSKYDWTEMVYVGAPSESHSANTYFSHSMAFGGGGV
ALSFPLAAALAQTLDVCIERYPKLYGSDDRLHACITELGVPLSREYGFHQWDIRGNSHGL
LASHPIAPFISIHHVELVDPIYPGLNSLESLELFTKAMKMEPMSFLQRSICYDQSQKLTF
AISLGYVVEVYPNVLLPRDLERSQRTYVAYNRMSQRNEFDFDTRDVQKSLCKKPILFFLK
DVWKDGNITRGSYARSSARDDLKRKVFCFRSPPLPDIDEIQVSSSPLSKRWHLAPRRLCS
ALKGSIDGTLFMFVQQCGRGTFGSASDSL

Transcript Sequence

Transcript ID

Zm00001d013847_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:22497734:22504273:1 gene:Zm00001d013847 gene_biotype:protein_coding transcript_biotype:protein_coding description:fringe-related protein
Sequence

ACGTCCATCCCTAAAACATCGCCACGTTCCGCCTGCGCCACCCCCCAATGTCCGTGGCCA
CCGGAGGCGGCGGCGTCCACCACCACCGAGTCCAATGCCCAAGTCCCACTACGCCGCTTC
CCCACCCCCGCACCCGCCGCCGCTCCTCCCGCTCGCGCTCGTCCCGCCGCGGCAGTGCCC
GCTCGTCGCGGCCCTGCTGGCGCTGCTCTCGGTGCTGCTTGCCACCGCGCTCTGGCTCCT
CCTCGTGCTCTCCCCGTCCCAGGGGGCTACCCCCGCCGCCTCCGAGCGCTCGGTGCTGCC
GGATGCGGGAGCGGCCGCGGCCGCGGGCCCCGGCGCCGCCTCGCCCCTCTCGCTCGGCCA
CATCGTCTTCGGCATCGCGGGGTCGGCGCATCTCTGGCCGCGCCGCCGCGAGTACGTCCG
CCTGTGGTGGGACCCCGCCGCGATGCGCGGCAACGTCTGGCTCGACGCGGGCGCGCCCGC
CGCGCCGGGGCCTAGCGCCCCCTGGGAGGGCTCCCTCCCGCCGATCCGGGTGTCCGAGGA
CACCTCGCGCTTCAGGTACACCAACCCCACGGGCCACCCGTCGGGGCTCCGGATCGCGCG
CATCGCCGCCGAGGCCGTCCGGCTCGTCGGCAGAGGGGCGGGCGCGCGCTGGCTCGTGCT
CGTCGACGACGACACCGTGCTGTGCGCGGACAACCTCGTCGCCGTGCTCAGCAAGTACGA
CTGGACGGAGATGGTGTACGTCGGGGCGCCGTCCGAGAGCCACTCCGCCAACACCTACTT
CAGCCATAGCATGGCTTTCGGAGGTGGCGGCGTCGCGCTCAGCTTTCCGCTCGCCGCTGC
ACTCGCGCAGACGCTCGACGTGTGCATCGAGAGGTACCCCAAGCTGTATGGAAGCGACGA
CCGCCTCCATGCCTGCATCACGGAGCTCGGCGTTCCCCTATCCCGCGAATACGGATTCCA
CCAGTGGGATATCAGAGGCAATTCTCATGGGTTATTGGCATCTCATCCAATTGCTCCTTT
CATCAGTATCCACCATGTGGAGCTTGTGGACCCCATATACCCTGGATTGAACTCTCTTGA
GAGTCTGGAGCTGTTTACAAAGGCTATGAAAATGGAACCCATGAGCTTCCTGCAGCGTTC
AATTTGTTACGATCAAAGCCAAAAGCTTACATTTGCTATCTCGTTGGGCTATGTTGTTGA
AGTATATCCCAATGTTCTTCTTCCGCGTGATTTGGAGCGATCACAACGTACTTACGTTGC
TTATAATAGGATGAGTCAGAGAAATGAATTTGATTTTGACACTAGAGATGTCCAGAAATC
TTTGTGCAAGAAGCCGATCTTATTTTTCTTGAAGGATGTCTGGAAGGATGGAAACATAAC
TAGGGGATCTTATGCACGATCAAGTGCTAGGGATGACCTCAAAAGAAAGGTGTTCTGCTT
CCGGTCACCCCCTTTACCTGACATAGATGAGATCCAAGTTTCCTCGTCTCCATTAAGCAA
GCGCTGGCATCTGGCACCAAGAAGGTTGTGCAGTGCACTTAAAGGATCTATTGATGGTAC
TCTGTTTATGTTTGTTCAGCAATGTGGACGTGGGACTTTTGGTTCAGCTTCTGATTCCTT
ATGACATGGGAAATAGAGATGTATATTTTCTGTTCAGATGATACCTGGAAGATGTAGTTA
CCACCCTACATTCTTTGAGTCAAGTATAATTGGGGCTCTTTTTCTGCCTCAAACGCTTGA
CAGTAGCCAACTGTTTGTTATAATTGGTAGTTACTGAAGAAAAGACAGGCTGGAAATTTT
CGCTTTGGAATCTCTGTGGTTGGTGTCTGATACTTGGAGACTGAGGCCTAGTGAAGAGAT
CTTTGACTAAAGCTGCGCCGCTATGGTTGGCTGAGAACTAACTATCTGGTTTCATCCTGG
TGACCAGTTTACTCACCTTCGTGGATTCTCCATGAGTTGTGCGAAATCAGGTAAGGATAG
TAATATGTTAGTCGTAGGTTTTAGTGCTGTGATCCTGTAACCCTTCATTGTTCGTACCCT
TCCCGTCCTGTGCCTTCTCATGTGAAATGGAGCATTAACCAAAGAGTCGCTGTGGATTTC
AGTCAGGATCCAGTATAATAGTTGAACGATTGACTTTAGAATTTGGAGTTAAACAGTCCT
AGATTCATCCACACCTGTTCGAACTCCGGTGGAAGGTTTTCCGATTTCTAGGGGAATTTA
ACCATTTCTTCACTTTGATGTGAAATTTCAACGAGCTGGACAGAACTGGCCTTCTCTTTA
AGTTGTATCTTCATCTAGTGTATTTTTTTAATAATAATTCGTCTGGTGTTGAAGT