Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013829_T020
CDS Infomation	cds chromosome:B73_RefGen_v4:5:21850184:21860327:1 gene:Zm00001d013829 gene_biotype:protein_coding transcript_biotype:protein_coding description:embryo defective 2016
Sequence	ATGAACTGCAAGTCTATGCTTGAGCGTTTATCAAATAGTTATGATTACCTTGTTGATGAA GGGGCTGAACTGAGTTCTACCACAGAATTACTTCTAGATCGAACTCATGAGAAAGCTATT GTTGACCTCATGATTCCCTCACTTGTCTTGTTGATAAATCTCCTTCATATATTACGTGAA ACGAAAGAACAATACCGCAACAAAAAACTTCTTAGTTCTCTTCTGCAGTTGCACCGAGAA GTTAGCCCGAGGCTAGCAGCTTGTGCTGCAGATTTGTCCTTCATGTTTCCTACTTTTGCT ATAGGTTTTGGTGTTGTTTGTCATCTTATCACGTCAGCACTTGCTTGCTGGCCGTTGTAT AATTGGGCACCTGGTCTGTTTCATTGCCTTCTTGAAAATACCGAGGCTACTAATGCGTCC GTACCATTGGGCCCGAAGGCTGCTTTTAGTCTGCTTTGTCTCCTGGGTGATCTGTTCCCA GATGAAGGCATATGGCTATGGAAAGTTGAACTTCCTTCTCTCAGTGCCATTAGATCTTTG AGTACTGGAGCAGTGCTAGGGCCTCAAGTGGAGAAAGGGGTGAACTGGTACCTGCATCCT GAACATGTGACCATATTACTTGTGAGGCTGATGCCACAACTTGATAGGCTTGCTCGTATC ATTGATAACTTTGCTACTTCGGTCTTGATGGTGATACAGGACATGCTTCGTGTTTTCATT GTTCGTGTTGCCTTAGAAAAGATTGAGTGTGCAGTTGTTCTTCTACGCCCTATATTTATG TGGTTAGATGATAAAGTTGACAAAACTTCCCTGTCAGAGAGAGACACCTTTAAGGTCCAT CAGTTGCTTCAGTTTACTGTAAAATTGTCTGAGCATCCTACTGGCAAGGCATTGCTTTGG AGGATGGGGTTCACAAGGATTCTTAGCAAGTTACTACAGAATTGTAGCCGAGCATCTTTC CCGTATGATAATCAGACTTTTGGAAGGGCGCACTCTAAGAATGACCTTATGCTCAAATGG AGGATCCCTTTGTTTAAATCTATTGCATATATCTTTAGTATCGACCCATGTAATAATGAG AAGGCTGATGTTGAAGAGTCCCTGAATGAGAAGTCTGTTCATGAATGCTCTTCTGTCATG CATGACCTCATGATGTTCTGCCAGGTTTTGCCTGTTGGCCGGGAAATGTTAGCATGTTCG TTGGCGTTCAAGGAATTGGTTTATTCTTATACCTGTAGAAGTGCAGTAACTTTGATACTT TCACAAATACATACTTCCAACAAAGATGTTCTTGAAAAAGATGAGAGTGACCCTAACCAT AACTCACCATCTCTGGATGGTTGGAATTGCTTTTCCTCATTGTTCAAGTGCTGGAAGAAG CTTGTAAAGTATGTTGGTTCTAATGAACGAACAGATTATTTAGTAGAAACTATTTATTCC TTGACACTAGGTGCTATCACCCTCAGCCAGTATGGTGAAAATCTTGAGGGTCTGTTAATA CTGAGGTATCTATTTGGGCTCCCTTCTGATCCTAGTGGTTCCTTGGAATCATCTGGTGAG AGTCCAAGTGAGATTGAGTTATTCATGAAGACATATGAAGAGAAGATATGCCAGGGCATT GAAAATTCAGCGACTGCTGTTGGAAAGACTCTTTTACGCAAGCTACTGAATTCGATCAAA TTACTACGCTCAATTCTTGAGAATTCTGGTCAATCCGCAGATACAGTTCAGATGGTTCTT GAAGAAGGCACTGACTCACTGTCTGAAATTGCTCGCTCTGTTGTTATGACAGCTCATCTT ATGCCATCCCTAGCCAATGTGTCAGTAAATGATGAATCTCCTTTTCTCTTCTCTAATATG TGGAAGGTTATTGTTGATTCAGAAGAGCCTCTTGACTGCCAAGAGGGTGAATTTGCAAAG AGGCTAGTTTGGGAGTTGCCTGATTCTTCTCTTGATAGACAACTAGCACCTGGCCAATCT GCCAGGAGGAAATTAGCACTGGGAGAGAGTGCAAGTAGGCGTGTAAGGGATAATCAACTG CCTGAACCCACTGGGCAGTTCTCACGAGGTTTAAATACATCCAATGCTTCTTCGGGACAT ACACGCAGAGACACTTTCCGTCAGCGGAAACCTAACACAAGTAGACCACCTTCAATGCAT GTAGATGACTATGTTGCAAGAGAGAGAAACATAGATGGTGCAAGTAGTGCGTCAAATATT GTGAACTCTACCCCACGAGGAACACTTAGTGGAAGGCCTCCATCCATTCATGTTGATGAA TTTATGGCAAGGCAGAGAGAACGTCAAAATCATGCGCCAGCCCCAACTGGAGATGCACCT CAAGCTAAAAGTCAGACAACAAGTTTAGATGACAGTCTTCGTACTAAGCCAGAGAACTTG CGTCAACCCAAGACTGATCTCGATGATGATCAAGAAATTGAAATTGTCTTTGATGAGGAA TCAGGTTCGGATGATAAACTTCCTTTCCCTCAACCAGATGATAGTCTCCAATCTCCACCT GTCATTATTGGGGAAAATTCTCCTGGTCCTGTTATTGACGAGACAGAAAATCAGGAGAAT GAAAGAGTTCCCTTTTTCCAGAGGGCCACATCTATCCCGAAGGACGATGAAAATCTTGGC ATTGGCATTTCTTCCCAGACTGCAATGCTCTCAGAAGCTAACAGTTCTTTGGAACTGAAA CATTCAGTTTCTAGCCCAGGGAAGAATTCTTTTCGTGATCATGCTGAAGAGTCTAATTAT GATTCTATTGGTGTATCTGGGAGACCATCTTTACAAGCAGATCATCAACAATTATCTCGT AGACATGAAAAGAGAAGTCCACGAAAATTTTCTGAGACTTCTCTGTCAAATGGATTCCAT GGGCGTGAGCATAGACATTCCAATAACCATCCACCTCTGCCACCAATGCCACCTCCAATT TCATCCGTGTCCATGCAAAATACTGATTCAGTTAATAGGCAGTCATCTTCGTTCAGTGCT CGAGATCGACCAACACCTAATCCTTCTGGTTATCCTACACAATCTTTTGACTCTAGTATG CCTAGTGCTTTCACAGGCCTTCAGGGTCAAACTCAATACATGCTTGCAGGCGCTGGCAGT TCATCAGCGAATGAGTTACCCAATGTGGAGGCCAAGCTTCTATGGAACACATTTCCAGCA AATAGGATCCCTCTGGAGACCTTCAGCTCAGGTTTACCTGCTCGGCCGATGCCACCCCTT ACACCTTATTCAGCTGTTGCTACTCAGCACGCTACGATGAACTCTGGCTCTCCTGCAAAC CTGTATAGCCAGGGCAGTGTTGTCCAGCCTTCTCCAACTGCTTCTATTATTAGTGATTCA AATTTGGCCATGAACTCCGCATCTGGCAGCATGCTTGCATCGAATCTGCTGCCATCATTT GCATCACAATTTCTGATGAGCAGGCCTTCAATGCCTACTCCGTTTTTTGGCACGCCTCTT CAACAAGTTCAATTCTCATCCGGTCTTCCACAAAATATTTCTAACCCTCAGCCACCTGTC TCAATACAACCACGGCCACCCCCACCCCCACCACCCCCGCAGCAGCCACATCCTTCTCAG ACACTCCAACAACTTGGTGCTATCCAATTACCACACCAAGATCAGCAGCACTCATATCCC CATAGTGCTATCTTGCCACAAGTTACGTTGCAGTTTCCTAACCAGCTACCCATTCCTCAA GTACAATTGTATCATCAAAGCCAGCAGGAATCTGGGCAAACACTGAGGCAAGTTGGTGAA CAATCACAACTTCAGAACCAGGGTATGCAAGCAGATAGTTTCTCTCAACAGCAGCAAGAC TCAGGGATCAACTTAAACCAGTTCTTTTCATCTCCAGAAGCCATTCAGAGTCTACTTAGT GATCGTGAGAAGCTCTGCCAACTTTTAGAGCAGAATCCAAAACTTATGCAAATGCTCCAG GATCGCATTGGCCAGTTGTAG

Peptide Sequence

PEP ID	Zm00001d013829_P020
PEP Infomation	pep chromosome:B73_RefGen_v4:5:21850184:21860327:1 gene:Zm00001d013829 transcript:Zm00001d013829_T020 gene_biotype:protein_coding transcript_biotype:protein_coding description:embryo defective 2016
Sequence	MNCKSMLERLSNSYDYLVDEGAELSSTTELLLDRTHEKAIVDLMIPSLVLLINLLHILRE TKEQYRNKKLLSSLLQLHREVSPRLAACAADLSFMFPTFAIGFGVVCHLITSALACWPLY NWAPGLFHCLLENTEATNASVPLGPKAAFSLLCLLGDLFPDEGIWLWKVELPSLSAIRSL STGAVLGPQVEKGVNWYLHPEHVTILLVRLMPQLDRLARIIDNFATSVLMVIQDMLRVFI VRVALEKIECAVVLLRPIFMWLDDKVDKTSLSERDTFKVHQLLQFTVKLSEHPTGKALLW RMGFTRILSKLLQNCSRASFPYDNQTFGRAHSKNDLMLKWRIPLFKSIAYIFSIDPCNNE KADVEESLNEKSVHECSSVMHDLMMFCQVLPVGREMLACSLAFKELVYSYTCRSAVTLIL SQIHTSNKDVLEKDESDPNHNSPSLDGWNCFSSLFKCWKKLVKYVGSNERTDYLVETIYS LTLGAITLSQYGENLEGLLILRYLFGLPSDPSGSLESSGESPSEIELFMKTYEEKICQGI ENSATAVGKTLLRKLLNSIKLLRSILENSGQSADTVQMVLEEGTDSLSEIARSVVMTAHL MPSLANVSVNDESPFLFSNMWKVIVDSEEPLDCQEGEFAKRLVWELPDSSLDRQLAPGQS ARRKLALGESASRRVRDNQLPEPTGQFSRGLNTSNASSGHTRRDTFRQRKPNTSRPPSMH VDDYVARERNIDGASSASNIVNSTPRGTLSGRPPSIHVDEFMARQRERQNHAPAPTGDAP QAKSQTTSLDDSLRTKPENLRQPKTDLDDDQEIEIVFDEESGSDDKLPFPQPDDSLQSPP VIIGENSPGPVIDETENQENERVPFFQRATSIPKDDENLGIGISSQTAMLSEANSSLELK HSVSSPGKNSFRDHAEESNYDSIGVSGRPSLQADHQQLSRRHEKRSPRKFSETSLSNGFH GREHRHSNNHPPLPPMPPPISSVSMQNTDSVNRQSSSFSARDRPTPNPSGYPTQSFDSSM PSAFTGLQGQTQYMLAGAGSSSANELPNVEAKLLWNTFPANRIPLETFSSGLPARPMPPL TPYSAVATQHATMNSGSPANLYSQGSVVQPSPTASIISDSNLAMNSASGSMLASNLLPSF ASQFLMSRPSMPTPFFGTPLQQVQFSSGLPQNISNPQPPVSIQPRPPPPPPPPQQPHPSQ TLQQLGAIQLPHQDQQHSYPHSAILPQVTLQFPNQLPIPQVQLYHQSQQESGQTLRQVGE QSQLQNQGMQADSFSQQQQDSGINLNQFFSSPEAIQSLLSDREKLCQLLEQNPKLMQMLQ DRIGQL

Transcript Sequence

Transcript ID	Zm00001d013829_T020
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:21850184:21860327:1 gene:Zm00001d013829 gene_biotype:protein_coding transcript_biotype:protein_coding description:embryo defective 2016
Sequence	AAGCCTGTGGCGTCATCCCTTTTTGAAGAAGGCGCCATAACTGTTATATATGTTGTCCTG ATGAACTGCAAGTCTATGCTTGAGCGTTTATCAAATAGTTATGATTACCTTGTTGATGAA GGGGCTGAACTGAGTTCTACCACAGAATTACTTCTAGATCGAACTCATGAGAAAGCTATT GTTGACCTCATGATTCCCTCACTTGTCTTGTTGATAAATCTCCTTCATATATTACGTGAA ACGAAAGAACAATACCGCAACAAAAAACTTCTTAGTTCTCTTCTGCAGTTGCACCGAGAA GTTAGCCCGAGGCTAGCAGCTTGTGCTGCAGATTTGTCCTTCATGTTTCCTACTTTTGCT ATAGGTTTTGGTGTTGTTTGTCATCTTATCACGTCAGCACTTGCTTGCTGGCCGTTGTAT AATTGGGCACCTGGTCTGTTTCATTGCCTTCTTGAAAATACCGAGGCTACTAATGCGTCC GTACCATTGGGCCCGAAGGCTGCTTTTAGTCTGCTTTGTCTCCTGGGTGATCTGTTCCCA GATGAAGGCATATGGCTATGGAAAGTTGAACTTCCTTCTCTCAGTGCCATTAGATCTTTG AGTACTGGAGCAGTGCTAGGGCCTCAAGTGGAGAAAGGGGTGAACTGGTACCTGCATCCT GAACATGTGACCATATTACTTGTGAGGCTGATGCCACAACTTGATAGGCTTGCTCGTATC ATTGATAACTTTGCTACTTCGGTCTTGATGGTGATACAGGACATGCTTCGTGTTTTCATT GTTCGTGTTGCCTTAGAAAAGATTGAGTGTGCAGTTGTTCTTCTACGCCCTATATTTATG TGGTTAGATGATAAAGTTGACAAAACTTCCCTGTCAGAGAGAGACACCTTTAAGGTCCAT CAGTTGCTTCAGTTTACTGTAAAATTGTCTGAGCATCCTACTGGCAAGGCATTGCTTTGG AGGATGGGGTTCACAAGGATTCTTAGCAAGTTACTACAGAATTGTAGCCGAGCATCTTTC CCGTATGATAATCAGACTTTTGGAAGGGCGCACTCTAAGAATGACCTTATGCTCAAATGG AGGATCCCTTTGTTTAAATCTATTGCATATATCTTTAGTATCGACCCATGTAATAATGAG AAGGCTGATGTTGAAGAGTCCCTGAATGAGAAGTCTGTTCATGAATGCTCTTCTGTCATG CATGACCTCATGATGTTCTGCCAGGTTTTGCCTGTTGGCCGGGAAATGTTAGCATGTTCG TTGGCGTTCAAGGAATTGGTTTATTCTTATACCTGTAGAAGTGCAGTAACTTTGATACTT TCACAAATACATACTTCCAACAAAGATGTTCTTGAAAAAGATGAGAGTGACCCTAACCAT AACTCACCATCTCTGGATGGTTGGAATTGCTTTTCCTCATTGTTCAAGTGCTGGAAGAAG CTTGTAAAGTATGTTGGTTCTAATGAACGAACAGATTATTTAGTAGAAACTATTTATTCC TTGACACTAGGTGCTATCACCCTCAGCCAGTATGGTGAAAATCTTGAGGGTCTGTTAATA CTGAGGTATCTATTTGGGCTCCCTTCTGATCCTAGTGGTTCCTTGGAATCATCTGGTGAG AGTCCAAGTGAGATTGAGTTATTCATGAAGACATATGAAGAGAAGATATGCCAGGGCATT GAAAATTCAGCGACTGCTGTTGGAAAGACTCTTTTACGCAAGCTACTGAATTCGATCAAA TTACTACGCTCAATTCTTGAGAATTCTGGTCAATCCGCAGATACAGTTCAGATGGTTCTT GAAGAAGGCACTGACTCACTGTCTGAAATTGCTCGCTCTGTTGTTATGACAGCTCATCTT ATGCCATCCCTAGCCAATGTGTCAGTAAATGATGAATCTCCTTTTCTCTTCTCTAATATG TGGAAGGTTATTGTTGATTCAGAAGAGCCTCTTGACTGCCAAGAGGGTGAATTTGCAAAG AGGCTAGTTTGGGAGTTGCCTGATTCTTCTCTTGATAGACAACTAGCACCTGGCCAATCT GCCAGGAGGAAATTAGCACTGGGAGAGAGTGCAAGTAGGCGTGTAAGGGATAATCAACTG CCTGAACCCACTGGGCAGTTCTCACGAGGTTTAAATACATCCAATGCTTCTTCGGGACAT ACACGCAGAGACACTTTCCGTCAGCGGAAACCTAACACAAGTAGACCACCTTCAATGCAT GTAGATGACTATGTTGCAAGAGAGAGAAACATAGATGGTGCAAGTAGTGCGTCAAATATT GTGAACTCTACCCCACGAGGAACACTTAGTGGAAGGCCTCCATCCATTCATGTTGATGAA TTTATGGCAAGGCAGAGAGAACGTCAAAATCATGCGCCAGCCCCAACTGGAGATGCACCT CAAGCTAAAAGTCAGACAACAAGTTTAGATGACAGTCTTCGTACTAAGCCAGAGAACTTG CGTCAACCCAAGACTGATCTCGATGATGATCAAGAAATTGAAATTGTCTTTGATGAGGAA TCAGGTTCGGATGATAAACTTCCTTTCCCTCAACCAGATGATAGTCTCCAATCTCCACCT GTCATTATTGGGGAAAATTCTCCTGGTCCTGTTATTGACGAGACAGAAAATCAGGAGAAT GAAAGAGTTCCCTTTTTCCAGAGGGCCACATCTATCCCGAAGGACGATGAAAATCTTGGC ATTGGCATTTCTTCCCAGACTGCAATGCTCTCAGAAGCTAACAGTTCTTTGGAACTGAAA CATTCAGTTTCTAGCCCAGGGAAGAATTCTTTTCGTGATCATGCTGAAGAGTCTAATTAT GATTCTATTGGTGTATCTGGGAGACCATCTTTACAAGCAGATCATCAACAATTATCTCGT AGACATGAAAAGAGAAGTCCACGAAAATTTTCTGAGACTTCTCTGTCAAATGGATTCCAT GGGCGTGAGCATAGACATTCCAATAACCATCCACCTCTGCCACCAATGCCACCTCCAATT TCATCCGTGTCCATGCAAAATACTGATTCAGTTAATAGGCAGTCATCTTCGTTCAGTGCT CGAGATCGACCAACACCTAATCCTTCTGGTTATCCTACACAATCTTTTGACTCTAGTATG CCTAGTGCTTTCACAGGCCTTCAGGGTCAAACTCAATACATGCTTGCAGGCGCTGGCAGT TCATCAGCGAATGAGTTACCCAATGTGGAGGCCAAGCTTCTATGGAACACATTTCCAGCA AATAGGATCCCTCTGGAGACCTTCAGCTCAGGTTTACCTGCTCGGCCGATGCCACCCCTT ACACCTTATTCAGCTGTTGCTACTCAGCACGCTACGATGAACTCTGGCTCTCCTGCAAAC CTGTATAGCCAGGGCAGTGTTGTCCAGCCTTCTCCAACTGCTTCTATTATTAGTGATTCA AATTTGGCCATGAACTCCGCATCTGGCAGCATGCTTGCATCGAATCTGCTGCCATCATTT GCATCACAATTTCTGATGAGCAGGCCTTCAATGCCTACTCCGTTTTTTGGCACGCCTCTT CAACAAGTTCAATTCTCATCCGGTCTTCCACAAAATATTTCTAACCCTCAGCCACCTGTC TCAATACAACCACGGCCACCCCCACCCCCACCACCCCCGCAGCAGCCACATCCTTCTCAG ACACTCCAACAACTTGGTGCTATCCAATTACCACACCAAGATCAGCAGCACTCATATCCC CATAGTGCTATCTTGCCACAAGTTACGTTGCAGTTTCCTAACCAGCTACCCATTCCTCAA GTACAATTGTATCATCAAAGCCAGCAGGAATCTGGGCAAACACTGAGGCAAGTTGGTGAA CAATCACAACTTCAGAACCAGGGTATGCAAGCAGATAGTTTCTCTCAACAGCAGCAAGAC TCAGGGATCAACTTAAACCAGTTCTTTTCATCTCCAGAAGCCATTCAGAGTCTACTTAGT GATCGTGAGAAGCTCTGCCAACTTTTAGAGCAGAATCCAAAACTTATGCAAATGCTCCAG GATCGCATTGGCCAGTTGTAGTCGCACTGGAGGTGCTATTGTGAAAGTGAAATCTGATGC TGGTCGATCGCTAGGTTCCTAGAGTATGGTGTTGTTTTGTTTTCGGCTATGGCTGTAGCT AGATGAAAGCAACTGCCAGCTTGCTAGTCGCCGAAATGTATTCCTATGTACATTATATGT AACTTTGTTCTGTAATGTGAAAATTTGTAATGTTAGTGCGTATCTAATTTATAGTTTTAA GTTTACCTTAGTGGTTAGATCGTGTGACATGCGCAGCGACGGGAAAACGACGCCGCCTTT TGTCTGCAAAGGCATTTGACGCTAACTACCTGTAGAGTTCTGAATATCCTGTTG