Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013828_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:21546425:21565652:1 gene:Zm00001d013828 gene_biotype:protein_coding transcript_biotype:protein_coding description:Switch 2
Sequence

ATGTCGCTCAACCGCCTCAAGGAAACCCTCCACGCCTGTTCCTCTTCCTCCTCCGAACCA
CGGACCCAACCGCGCTCACCACAGCATCCTGCCCGCCTTCCGCGGAGACCCCCAAAGACG
TCCCTTTCGCAGCAGCTCCTCCGCCTCGAGGCCGCCGCCTCTTCATCCTCCTTCTTCTCC
TCCAGGCCCTTACAGCTCCCACCCGCCCCCAGGCCCCCGATCGAGAAGCCGCGGGAGGAT
GTCGAACCGCCGTCGTCGGAGGATGAGGACGAGAGAAAAAGTCGCCCCATTATCCGCCGC
TGCCTGCATCCGCCACCAGCGGCCGCCCTCGAGTCCCGCGGGCCATACGAGCCACTTGTG
CTCTCGCTGCCTGGAGAGCACCCTGTCGTCCAGGTGCCCCCATCAATAAATTGCAGGCTA
CTTGCGCATCAGAGGGACGGTGTGAGATTCTTATACAATTTGTATAGAAACAATCATGGC
GGTGTTCTTGGAGATGACATGGGTTTGGGGAAGACCATTCAAACTATTGCTTTTTTGTCT
TCTGTTATTGGAAAAGGCAATGGCCATGGGCAATCAACAAACAAAGGAAAGATGACTGGT
CCTGTACTCATCCTCTGCCCTACTTCGGTGATCCGGAACTGGGAAAATGAATTTTCCGAG
TGGGCAGAATTCTCTGTTGCTGTCTATCATGGTCCAAATCGTGATTTAGTTCTTGGAAAA
ATTGAAAATCAAGGACTGGAGGTACTCATTACCAGTTTTGACACTTTCAGAATTCATGAT
AAGGTTTTATGTGGTATCTCGTGGGAACTTGTGGTTGTTGATGAGGCACATCGTCTCAAG
AATGAAAAGTCCAAGTTATATACAGCATGCTTGGGGATAACAACTCAAAAGCGGTTTGGT
CTCACGGGGACCATAATGCAGAATAAGATCATGGAATTATTTAATCTATTTGACTGGGTC
GTGCCTGGCTGCTTAGGGGACCGAGAACACTTTCGAGCTTATTATGATGAGCCTCTAAAA
CAGGGTCAGAGGCTAAGTGCTCCTGAGAGATTTGTTCAAGTTGCTGATGCGCGCAAGAAG
CACCTTGTTTCCATTCTTAGGGAATTCTTATTGAGAAGGACAAAAGAGGAGACAATTGGA
CATCTTATGCTTGGGAAGGAGGATAATATTGTTTTCTGCAAAATGAGTGACGTTCAAAAA
CGTGTTTATAGAAGAATGCTGCAACAACCTGATATACAAATCCTTATTAATAAGGATGTC
CGCTGTAGCTGTGGAAGTCCTTTACCTCAGGTTGAATGTTGCAAGAGAACTGAACCAGAT
GGTGTTATATGGTCTTATCTTCACAGAGAGAACCCTGAAGGCTGTTCTATATGCCCCTTC
TGTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGATTAGCAACCATCTGGAGCTGATA
AAACCTAATCCAAAGGATGAGCTTGAAAAGCAGAAGAAAGATGCTGAACTTGCAGCTGCT
GTCTTTGGTGCAGATATTGACTTAGTTGGTGGTACTGCTAAAAGTGAGAACTTCATGGGT
CTCAGTGATGCTGAGAACTGTGGAAAGATGCGAGCACTAGAAAGGCTTCTGTCATTATGG
ACTGGACAGGGTGACAAGATTCTTCTTTTCAGTTATTCTGTCAGGATGCTTGACATACTA
GAGAAGTTTCTCATAAGGAAGGGTTATTGCTTTTCACGCTTCGATGGAACAACTCCGATG
AATGCACGCCAATCACTAGTGGATGAGTTCAACAGAAGCCCTAGCAAACAGGTTTTCCTT
ATATCTACTCGAGCAGGTAATTTAGGTGTAAACCTTGTTAGTGCTAACCGCGTGGTGATA
TTTGATCCAAGTTGGAACCCTGCCCAAGACTTGCAAGCACAAGACAGATCATTTCGGTAT
GGACAGAGACGGCATGTTACAGTATTTCGCCTACTTGGTGCCGGTTCACTTGAAGAGCTC
ATTTATTCTAGGCAAATATATAAACAGCAGCTTTCCAACATTGCAGTCTCTGGAAAAATA
GAGAGGCGTTACTTTGAAGGATGA

Peptide Sequence

PEP ID

Zm00001d013828_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:21546425:21565652:1 gene:Zm00001d013828 transcript:Zm00001d013828_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Switch 2
Sequence

MSLNRLKETLHACSSSSSEPRTQPRSPQHPARLPRRPPKTSLSQQLLRLEAAASSSSFFS
SRPLQLPPAPRPPIEKPREDVEPPSSEDEDERKSRPIIRRCLHPPPAAALESRGPYEPLV
LSLPGEHPVVQVPPSINCRLLAHQRDGVRFLYNLYRNNHGGVLGDDMGLGKTIQTIAFLS
SVIGKGNGHGQSTNKGKMTGPVLILCPTSVIRNWENEFSEWAEFSVAVYHGPNRDLVLGK
IENQGLEVLITSFDTFRIHDKVLCGISWELVVVDEAHRLKNEKSKLYTACLGITTQKRFG
LTGTIMQNKIMELFNLFDWVVPGCLGDREHFRAYYDEPLKQGQRLSAPERFVQVADARKK
HLVSILREFLLRRTKEETIGHLMLGKEDNIVFCKMSDVQKRVYRRMLQQPDIQILINKDV
RCSCGSPLPQVECCKRTEPDGVIWSYLHRENPEGCSICPFCLVLPFLVKLQQISNHLELI
KPNPKDELEKQKKDAELAAAVFGADIDLVGGTAKSENFMGLSDAENCGKMRALERLLSLW
TGQGDKILLFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQSLVDEFNRSPSKQVFL
ISTRAGNLGVNLVSANRVVIFDPSWNPAQDLQAQDRSFRYGQRRHVTVFRLLGAGSLEEL
IYSRQIYKQQLSNIAVSGKIERRYFEG

Transcript Sequence

Transcript ID

Zm00001d013828_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:21546425:21565652:1 gene:Zm00001d013828 gene_biotype:protein_coding transcript_biotype:protein_coding description:Switch 2
Sequence

GCCGTCGCCTCCGTGTCCTTCCACGGCAGGGACCCGCCGGAGCATCACCGCCTCCGTCCA
TGTCGCTCAACCGCCTCAAGGAAACCCTCCACGCCTGTTCCTCTTCCTCCTCCGAACCAC
GGACCCAACCGCGCTCACCACAGCATCCTGCCCGCCTTCCGCGGAGACCCCCAAAGACGT
CCCTTTCGCAGCAGCTCCTCCGCCTCGAGGCCGCCGCCTCTTCATCCTCCTTCTTCTCCT
CCAGGCCCTTACAGCTCCCACCCGCCCCCAGGCCCCCGATCGAGAAGCCGCGGGAGGATG
TCGAACCGCCGTCGTCGGAGGATGAGGACGAGAGAAAAAGTCGCCCCATTATCCGCCGCT
GCCTGCATCCGCCACCAGCGGCCGCCCTCGAGTCCCGCGGGCCATACGAGCCACTTGTGC
TCTCGCTGCCTGGAGAGCACCCTGTCGTCCAGGTGCCCCCATCAATAAATTGCAGGCTAC
TTGCGCATCAGAGGGACGGTGTGAGATTCTTATACAATTTGTATAGAAACAATCATGGCG
GTGTTCTTGGAGATGACATGGGTTTGGGGAAGACCATTCAAACTATTGCTTTTTTGTCTT
CTGTTATTGGAAAAGGCAATGGCCATGGGCAATCAACAAACAAAGGAAAGATGACTGGTC
CTGTACTCATCCTCTGCCCTACTTCGGTGATCCGGAACTGGGAAAATGAATTTTCCGAGT
GGGCAGAATTCTCTGTTGCTGTCTATCATGGTCCAAATCGTGATTTAGTTCTTGGAAAAA
TTGAAAATCAAGGACTGGAGGTACTCATTACCAGTTTTGACACTTTCAGAATTCATGATA
AGGTTTTATGTGGTATCTCGTGGGAACTTGTGGTTGTTGATGAGGCACATCGTCTCAAGA
ATGAAAAGTCCAAGTTATATACAGCATGCTTGGGGATAACAACTCAAAAGCGGTTTGGTC
TCACGGGGACCATAATGCAGAATAAGATCATGGAATTATTTAATCTATTTGACTGGGTCG
TGCCTGGCTGCTTAGGGGACCGAGAACACTTTCGAGCTTATTATGATGAGCCTCTAAAAC
AGGGTCAGAGGCTAAGTGCTCCTGAGAGATTTGTTCAAGTTGCTGATGCGCGCAAGAAGC
ACCTTGTTTCCATTCTTAGGGAATTCTTATTGAGAAGGACAAAAGAGGAGACAATTGGAC
ATCTTATGCTTGGGAAGGAGGATAATATTGTTTTCTGCAAAATGAGTGACGTTCAAAAAC
GTGTTTATAGAAGAATGCTGCAACAACCTGATATACAAATCCTTATTAATAAGGATGTCC
GCTGTAGCTGTGGAAGTCCTTTACCTCAGGTTGAATGTTGCAAGAGAACTGAACCAGATG
GTGTTATATGGTCTTATCTTCACAGAGAGAACCCTGAAGGCTGTTCTATATGCCCCTTCT
GTCTTGTTCTTCCTTTCCTCGTCAAGCTTCAGCAGATTAGCAACCATCTGGAGCTGATAA
AACCTAATCCAAAGGATGAGCTTGAAAAGCAGAAGAAAGATGCTGAACTTGCAGCTGCTG
TCTTTGGTGCAGATATTGACTTAGTTGGTGGTACTGCTAAAAGTGAGAACTTCATGGGTC
TCAGTGATGCTGAGAACTGTGGAAAGATGCGAGCACTAGAAAGGCTTCTGTCATTATGGA
CTGGACAGGGTGACAAGATTCTTCTTTTCAGTTATTCTGTCAGGATGCTTGACATACTAG
AGAAGTTTCTCATAAGGAAGGGTTATTGCTTTTCACGCTTCGATGGAACAACTCCGATGA
ATGCACGCCAATCACTAGTGGATGAGTTCAACAGAAGCCCTAGCAAACAGGTTTTCCTTA
TATCTACTCGAGCAGGTAATTTAGGTGTAAACCTTGTTAGTGCTAACCGCGTGGTGATAT
TTGATCCAAGTTGGAACCCTGCCCAAGACTTGCAAGCACAAGACAGATCATTTCGGTATG
GACAGAGACGGCATGTTACAGTATTTCGCCTACTTGGTGCCGGTTCACTTGAAGAGCTCA
TTTATTCTAGGCAAATATATAAACAGCAGCTTTCCAACATTGCAGTCTCTGGAAAAATAG
AGAGGCGTTACTTTGAAGGATGACAAGAAATTTCAAGGTGAGCTCTTTGGGATCTGCAAT
CTTTTCCGTGACTTGTCCGATAAGCTTTTTACTAGTGAGATTATTGAGATGCATGGAGAA
CATGGCAAGAGTAGTGCAACAGAAGCAACAGGGATAAGAGAAATAGTCGATACTGATTTA
TTTGGTTCACAAGAGAATAGGAAGTCTTCCACAGCAACAACACATACGGATGATCAGAAA
TTGGTTGATTTTGGGATAGTTTATGCCCACCGCAACGAGGATGTCGTGAACATGAGGACA
GACGGAAGAGAGAAAGGTGGAGCAGACGAGACTGTCCAGAGCTCCTTAGAGGAGCTGCTT
AGTAAGAATGAAACAAAGCACACTGCCATGGAAAAATCTTATTCATCGGAGGAGAAAAGG
GAAGTGGCAAGATCTTATTCACTGGAGCAGAAAAAGAAAGAGTTTAGCTGCATCGCATCC
TTCATGGGTATGGATGACCTTGAATTTAGCAAGTGGTTGCTATCAGCCTCACCGCACCAG
CGGTCTGAAGTGCTGCAGGACTACAGGAGGAAGAAGAAAAATCAGAAATGATGATGCAGG
TCCTCGGAGCTAACCGGCTACCGCAAAGCTTTGACGTAGTGATTAGCTTGTGTAGCTAAT
TGTGGTAGTTATGACAAGGGAATGGTAGTAAAATTGACCCGTGGCACCGATCAGTATGTA
TGTCTGCAGCCCCGCTTATTTTGAACCTTATATTGGTGCAAACTGAGCTCAGCAAGGCCT
TGGTCACTCTCCCTGGCCGTTTTTTTTCGGTCAGGTGAAATATAATCTGTATTGTGTCTG
TTAGTTCCTGTTCAGCTGTCTAAGCCTTTGTGTAGCGAGTCTTATCATGTTAGGTGGCTT
GCAATGTTACCTTGGTCTGTACTAATCATTTGGATATCGTAGTCTTCTCCGTACTAAAAT
ATAATTCGTTTTAG