Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013719_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:5:18429282:18434332:1 gene:Zm00001d013719 gene_biotype:protein_coding transcript_biotype:protein_coding description:cytochrome P450 family 87 subfamily A polypeptide 2
Sequence

ATGTCGATGGATTACTTGGCTGCTGCTGTACCCGTGACCTTGGCTCTGGGAGTGGGAGCT
ATCTTGTTGGTCTTACGATGGACGTACTGCCGCCGCCGAACAAGCGCCGAAGAAGCAAGA
CTGCCCCCGGGGTCAAGGGGCCTCCTGTTCCTGGGGGAGACGCTCCACTACCTGGCAGCG
TCCTCCACCCCGGGGGTATTGCCACCATTCTTCCAGCGACGGTTGGAGAGGTATGGCCCC
ATCTTCCGGACGAACCTGGTCGGGGAGGATCTCGTCGTGTCGCTGGACGCGGAGCTGAAC
GCGCACGTGCTGAAGCAGGAGGAGCGCGGCTTCCAGATCTGGTACCCGCCCTCCTTCATG
CGCGTCTTCGGCGCCGACAACATCACCGCCAAGCTCGGCGTGCTCCACCGCCACATGAGG
ACCCTCGTGCTCCGCCTCTTCGGCCACCAGACCGTCCGCTCCGTGCTGCTGCACGACGTG
CAGCGGAGCGCGCGCGACGAGCTGCGCTCATGGCTCGGCCGCCCGGACGTCGAGGTCAGG
ACGGCCACCTCCAGGATGATATTTGGCGTCACTGCCAACAAGCTGATCAGCCATGACGAC
GCAGCATCTGGAGGCACGTTGTGGAGATGCTTCCACGACTGGACTTCGGGGCTGCTCTCG
TTTCCGGTTTCCATTCCCGGCACAACCTTCTACAGATGCATGCAGGGACGTAAGAAGGTT
ATGACGATGCTGAAACAGCAGCTCGTCGAGCGTCGACGGAACGCAGCGGAGCGCGAGACG
ACAGAGGATTTCTTCGATCTCGTGATCGATGAACTGAACAAGCCAGACCCTATGATGGAC
GAGAGCACCGCGTTGGACTTGCTGTTCACCATGTTGTTTGCGAGCCATGAGACGACGTCC
ATGGTATTAACCGTCATACTCAAGTATCTGACTGACAACCCAAAAGCTTTGCAAGAGCTG
ACAGAGGAGCACGAAAGAATCCTGGAAAGTAGGGCCGATCCAGGCTCTGACCTCACGTGG
GAGGAGTACAGGTCTATGAAATTCACATCTCATGTACGTACGATACAAATATATATCCTG
TCCATGCCAGAATTCGTATGGTTGTCGATCTCTTGGACTAATTAA

Peptide Sequence

PEP ID

Zm00001d013719_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:5:18429282:18434332:1 gene:Zm00001d013719 transcript:Zm00001d013719_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:cytochrome P450 family 87 subfamily A polypeptide 2
Sequence

MSMDYLAAAVPVTLALGVGAILLVLRWTYCRRRTSAEEARLPPGSRGLLFLGETLHYLAA
SSTPGVLPPFFQRRLERYGPIFRTNLVGEDLVVSLDAELNAHVLKQEERGFQIWYPPSFM
RVFGADNITAKLGVLHRHMRTLVLRLFGHQTVRSVLLHDVQRSARDELRSWLGRPDVEVR
TATSRMIFGVTANKLISHDDAASGGTLWRCFHDWTSGLLSFPVSIPGTTFYRCMQGRKKV
MTMLKQQLVERRRNAAERETTEDFFDLVIDELNKPDPMMDESTALDLLFTMLFASHETTS
MVLTVILKYLTDNPKALQELTEEHERILESRADPGSDLTWEEYRSMKFTSHVRTIQIYIL
SMPEFVWLSISWTN

Transcript Sequence

Transcript ID

Zm00001d013719_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:18429282:18434332:1 gene:Zm00001d013719 gene_biotype:protein_coding transcript_biotype:protein_coding description:cytochrome P450 family 87 subfamily A polypeptide 2
Sequence

ATGCATAGTAAAGTTAGCAATGTCGATGGATTACTTGGCTGCTGCTGTACCCGTGACCTT
GGCTCTGGGAGTGGGAGCTATCTTGTTGGTCTTACGATGGACGTACTGCCGCCGCCGAAC
AAGCGCCGAAGAAGCAAGACTGCCCCCGGGGTCAAGGGGCCTCCTGTTCCTGGGGGAGAC
GCTCCACTACCTGGCAGCGTCCTCCACCCCGGGGGTATTGCCACCATTCTTCCAGCGACG
GTTGGAGAGGTATGGCCCCATCTTCCGGACGAACCTGGTCGGGGAGGATCTCGTCGTGTC
GCTGGACGCGGAGCTGAACGCGCACGTGCTGAAGCAGGAGGAGCGCGGCTTCCAGATCTG
GTACCCGCCCTCCTTCATGCGCGTCTTCGGCGCCGACAACATCACCGCCAAGCTCGGCGT
GCTCCACCGCCACATGAGGACCCTCGTGCTCCGCCTCTTCGGCCACCAGACCGTCCGCTC
CGTGCTGCTGCACGACGTGCAGCGGAGCGCGCGCGACGAGCTGCGCTCATGGCTCGGCCG
CCCGGACGTCGAGGTCAGGACGGCCACCTCCAGGATGATATTTGGCGTCACTGCCAACAA
GCTGATCAGCCATGACGACGCAGCATCTGGAGGCACGTTGTGGAGATGCTTCCACGACTG
GACTTCGGGGCTGCTCTCGTTTCCGGTTTCCATTCCCGGCACAACCTTCTACAGATGCAT
GCAGGGACGTAAGAAGGTTATGACGATGCTGAAACAGCAGCTCGTCGAGCGTCGACGGAA
CGCAGCGGAGCGCGAGACGACAGAGGATTTCTTCGATCTCGTGATCGATGAACTGAACAA
GCCAGACCCTATGATGGACGAGAGCACCGCGTTGGACTTGCTGTTCACCATGTTGTTTGC
GAGCCATGAGACGACGTCCATGGTATTAACCGTCATACTCAAGTATCTGACTGACAACCC
AAAAGCTTTGCAAGAGCTGACAGAGGAGCACGAAAGAATCCTGGAAAGTAGGGCCGATCC
AGGCTCTGACCTCACGTGGGAGGAGTACAGGTCTATGAAATTCACATCTCATGTACGTAC
GATACAAATATATATCCTGTCCATGCCAGAATTCGTATGGTTGTCGATCTCTTGGACTAA
TTAATATGCTTTCTATACCACCACTTATTAGGTTATACATGAGTCGCTAAGGCTCGCAAA
CATCGCACTGGCCATGTTCAGGAAAGCAAATCAGGATGTGCACATAAATGGTCTGCATAA
TCTCAACCCCTCACTGAGAATATTGAAGAGAATACATAATATAAGCCAATGTTTATAATC
CATGCATTAATAATACATATGTGCTGTGTGTGCACTCAGGGTACACAATTCCAAAAGGAT
CAAAGATCATGATGTGTGCACTAGCATCGCACTTGAATACGGAGGTCTACGAGGACCCCT
CAGTGTTCAATCCATGGAGATGGAAGGTACATATGCGAAATAAAATCAACAGATAAATCC
GGGCCTAAGGATCACACGTGTGTGCATTGTGCATAGGATATTCCTGAACCAGTCGGCACC
TCTAAGGACTTTATGGCCTTCGGGGGTGGTTTGCGCCTATGCGCTGGTGCCGAGTTTTCC
AAGATGCAGATGGCTATGTTCCTCCATTACTTGGTCACAAATTACAGGTAAAAAAAAACT
CTCCATGGATTGTGTAAGTACTTATCAACCAACTATATATGACAAAATCATTATTGTGTT
CTCGTGAATAGCTGGAAACCCGTCAGCGGTGGGACAATGTTATTCTATCCAGGACTGCAA
TTTCCAGAAGGCTTCCACATCCAGCTTCTTCCAAAAATCCCAAACGTGGTTCCATAAACC
CTATGAAGAAATATGAATACGAATAATTTAAGCAAATATTCTAAATGTACCCTGGGGAAT
TGAAGTTCGATAACGATGTGGTACGGGCTGATTTGGTAACCATGGATCACAGGAGGATGG
GAGAGGATTGATGGAGAAATTAGTTCATTTCTCCCTCAACCTCTTTCAATCCTCTTATGA
TCCACTTATCACCAAATCAACCCTAATGATAGCAGGTCGAATTGTCGGAACAAATAATAG
TTTCACCAAACAGAAGGGGAGTATGCATGTGTGTAACTTTTTATAGTTATAAATAATAGT
AGAGTAAATTCAGCTCGTTGTGTAACAACTATGCAGGTGAGTAAAAATTGGTTCAGCATA
TTGTATATATTATGCCCAGTTCAATGGAAAAAAAAACTTTGTT