Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013689_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:17465790:17467595:-1 gene:Zm00001d013689 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase9 description: nine-cis-epoxycarotenoid dioxygenase9
Sequence	ATGCAGGGTCTCGCCCCGCCCACCTCTGTCTCCATACACCGGCACCTGCCGGCCGGGTCC AGGGCCCGGGCCTCCAACTCCGTCAGGTTCTCGCCGCGCGCCGTCCGCTCCGTGCCGCAC GAGTGCCTCCAGGCGCCGTTCCACGCCGACCTGCCGGCACCGTCCAAGAAGCCCACCGCC ATTGCCGTCCCGAGGCACGCCGCGGCGCCGCGCAAGTCTGGCGGCGGCGGCGGCAAGAAG CAGCTCAACCTATTCCAGCGCGCGGCGGCGGCCGCGCTCGACGCGTTCGAGGAGGGGTTC GTGGCCAACGTCCTCGAGCGGCCCCGCGGGCTGCCCAGCACGGCCGACCCAGCCGTGCAG ATCGCCGGCAACTTCGCGCCCGTCGGGGAGAGGCTGCCCGTGCATCGGCTCCCCGTCTCC GGCCGCATCCCGCCCTTCATCAGCGGCGTCTACGCGCGCAACGGCGCCAACCCCTGCTTC GACCCCGTCGCCGGGCACCACCTCTTCGACGGCGACGGCATGGTGCACGCGCTGCGGATA CGCGACGGCGTCGCCGAGTCCTACGCCTGCCGCTTCACCGAGACCGCGCGCCTGACCCAG GAGCGCGCGGTCGGCCGCCCCGTCTTCCCCAAGGCCATCGGCGAGCTGCACGGCCACTCC GGGATCGCGCGCCTCGCCCTGTTCTACGCGCGCGCCGCGTGCGGCCTCGTCGACCCCTCG GCCGGCACCGGCGTCGCCAACGCCGGACTCGTCTACTTCAACGGCCGCCTCCTCGCCATG TCCGAGGACGACCTGCCGTACCACGTCCGCGTCGCGGACGACGGCGACCTCGAGACCGTC GGCCGCTACGACTTCGACGGCCAGCTCGGCTGCCCCATGATCGCGCACCCCAAGCTGGAC CCGGCCACCGGGGAGCTGCACGCGCTCAGCTACGAGGTCGTCAGGAGGCCCTACCTCAAG TACTTCTACTTCAGGCCCGACGGCACCAAGTCCGACGACGTGGAGATCCCGCTGGCCCAG CCCACCATGATCCACGACTTCGCCATCACCGAGAACTTGGTCGTGGTGCCCGACCACCAG GTGGTGTTCAAGCTGCAGGAGATGCTGCGCGGCGGGTCGCCCGTGGTGCTGGACAGGGAG AAGACGTCGCGCTTCGGCGTCCTCCCGAAGCGCGCCGCGGACGCGTCGGAGATGGCGTGG GTGGACGTGCCGGACTGCTTCTGCTTCCACCTGTGGAACGCGTGGGAGGACGAGGCGACG GGCGAGGTGGTGGTGATCGGCTCCTGCATGACCCCCGCCGACTCCATCTTCAACGAGTCG GACGTGCGGCTCGAGAGCGTGCTGACGGAGATCCGGCTGGACGCGCGCACGGGCCGGTCG ACGCGCCGCGCCGTCCTGCCGCCGTCGCGGCAGGTGAACCTGGAGGTGGGCATGGTGAAC CGCAACCTCCTGGGGCGCAGGACGCGGTACGCGTACCTCGCGGTGGCCGAGCCGTGGCCC AAGGTCTCGGGCTTCGCCAAGGTGGACCTGGCCACGGGCGAGCTCGCCAGGTTCGAGTAC GGCGAGGGCCGGTTCGGCGGCGAGCCCTGCTTCGTGCCCATGGACCCCGCCGCGGCCCAC CCGCGCGGCGAGGACGACGGGCACGTGCTCGCCTTCGTCCACGACGAGCGCGCCGGCACG TCCGAGCTCCTGGTGGTCAATGCCGCCGACATGCGGCTGGAGGCCACCGTCCGGCTCCCG TCCCGCGTGCCCTTCGGCTTCCACGGCACCTTCATCACGGGCGCGGAGCTCGAGGCCCAG GCCTGA

Peptide Sequence

PEP ID	Zm00001d013689_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:17465790:17467595:-1 gene:Zm00001d013689 transcript:Zm00001d013689_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase9 description: nine-cis-epoxycarotenoid dioxygenase9
Sequence	MQGLAPPTSVSIHRHLPAGSRARASNSVRFSPRAVRSVPHECLQAPFHADLPAPSKKPTA IAVPRHAAAPRKSGGGGGKKQLNLFQRAAAAALDAFEEGFVANVLERPRGLPSTADPAVQ IAGNFAPVGERLPVHRLPVSGRIPPFISGVYARNGANPCFDPVAGHHLFDGDGMVHALRI RDGVAESYACRFTETARLTQERAVGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPS AGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCPMIAHPKLD PATGELHALSYEVVRRPYLKYFYFRPDGTKSDDVEIPLAQPTMIHDFAITENLVVVPDHQ VVFKLQEMLRGGSPVVLDREKTSRFGVLPKRAADASEMAWVDVPDCFCFHLWNAWEDEAT GEVVVIGSCMTPADSIFNESDVRLESVLTEIRLDARTGRSTRRAVLPPSRQVNLEVGMVN RNLLGRRTRYAYLAVAEPWPKVSGFAKVDLATGELARFEYGEGRFGGEPCFVPMDPAAAH PRGEDDGHVLAFVHDERAGTSELLVVNAADMRLEATVRLPSRVPFGFHGTFITGAELEAQ A

Transcript Sequence

Transcript ID	Zm00001d013689_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:17465790:17467595:-1 gene:Zm00001d013689 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase9 description: nine-cis-epoxycarotenoid dioxygenase9
Sequence	ATGCAGGGTCTCGCCCCGCCCACCTCTGTCTCCATACACCGGCACCTGCCGGCCGGGTCC AGGGCCCGGGCCTCCAACTCCGTCAGGTTCTCGCCGCGCGCCGTCCGCTCCGTGCCGCAC GAGTGCCTCCAGGCGCCGTTCCACGCCGACCTGCCGGCACCGTCCAAGAAGCCCACCGCC ATTGCCGTCCCGAGGCACGCCGCGGCGCCGCGCAAGTCTGGCGGCGGCGGCGGCAAGAAG CAGCTCAACCTATTCCAGCGCGCGGCGGCGGCCGCGCTCGACGCGTTCGAGGAGGGGTTC GTGGCCAACGTCCTCGAGCGGCCCCGCGGGCTGCCCAGCACGGCCGACCCAGCCGTGCAG ATCGCCGGCAACTTCGCGCCCGTCGGGGAGAGGCTGCCCGTGCATCGGCTCCCCGTCTCC GGCCGCATCCCGCCCTTCATCAGCGGCGTCTACGCGCGCAACGGCGCCAACCCCTGCTTC GACCCCGTCGCCGGGCACCACCTCTTCGACGGCGACGGCATGGTGCACGCGCTGCGGATA CGCGACGGCGTCGCCGAGTCCTACGCCTGCCGCTTCACCGAGACCGCGCGCCTGACCCAG GAGCGCGCGGTCGGCCGCCCCGTCTTCCCCAAGGCCATCGGCGAGCTGCACGGCCACTCC GGGATCGCGCGCCTCGCCCTGTTCTACGCGCGCGCCGCGTGCGGCCTCGTCGACCCCTCG GCCGGCACCGGCGTCGCCAACGCCGGACTCGTCTACTTCAACGGCCGCCTCCTCGCCATG TCCGAGGACGACCTGCCGTACCACGTCCGCGTCGCGGACGACGGCGACCTCGAGACCGTC GGCCGCTACGACTTCGACGGCCAGCTCGGCTGCCCCATGATCGCGCACCCCAAGCTGGAC CCGGCCACCGGGGAGCTGCACGCGCTCAGCTACGAGGTCGTCAGGAGGCCCTACCTCAAG TACTTCTACTTCAGGCCCGACGGCACCAAGTCCGACGACGTGGAGATCCCGCTGGCCCAG CCCACCATGATCCACGACTTCGCCATCACCGAGAACTTGGTCGTGGTGCCCGACCACCAG GTGGTGTTCAAGCTGCAGGAGATGCTGCGCGGCGGGTCGCCCGTGGTGCTGGACAGGGAG AAGACGTCGCGCTTCGGCGTCCTCCCGAAGCGCGCCGCGGACGCGTCGGAGATGGCGTGG GTGGACGTGCCGGACTGCTTCTGCTTCCACCTGTGGAACGCGTGGGAGGACGAGGCGACG GGCGAGGTGGTGGTGATCGGCTCCTGCATGACCCCCGCCGACTCCATCTTCAACGAGTCG GACGTGCGGCTCGAGAGCGTGCTGACGGAGATCCGGCTGGACGCGCGCACGGGCCGGTCG ACGCGCCGCGCCGTCCTGCCGCCGTCGCGGCAGGTGAACCTGGAGGTGGGCATGGTGAAC CGCAACCTCCTGGGGCGCAGGACGCGGTACGCGTACCTCGCGGTGGCCGAGCCGTGGCCC AAGGTCTCGGGCTTCGCCAAGGTGGACCTGGCCACGGGCGAGCTCGCCAGGTTCGAGTAC GGCGAGGGCCGGTTCGGCGGCGAGCCCTGCTTCGTGCCCATGGACCCCGCCGCGGCCCAC CCGCGCGGCGAGGACGACGGGCACGTGCTCGCCTTCGTCCACGACGAGCGCGCCGGCACG TCCGAGCTCCTGGTGGTCAATGCCGCCGACATGCGGCTGGAGGCCACCGTCCGGCTCCCG TCCCGCGTGCCCTTCGGCTTCCACGGCACCTTCATCACGGGCGCGGAGCTCGAGGCCCAG GCCTGA