Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013683_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:5:17282652:17295346:-1 gene:Zm00001d013683 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase II subunit 2
Sequence	ATGGAGGATGACGAGTACGAGGATGGGATGGACATGGGCTACGGCGGGCATCACCAGCGC GGCGGCGGCCACGCGGGGTACGGCGCGGAGGAGGACGACGAGATGGGGTATGGCGAGGGG GGTGGGGACGGGGACGAGATGGAGGAGGAGGCGGATGGGGACGCCGAGCAGCAGGAAGAT ATCACGCAGGACGACGCCTGGGCCGTCATCTCCGCCTACTTCGAGGAGAAGGGCCTCGTG CGCCAGCAGCTCGACTCCTTCGATGAGTTCATCCAGAACACCATGCAAGAGATTGTCGAT GAGTCCGCCGACATCGAGATCCGGCCCGAGTCGCAGCACAACCCCGGCCGTCAGGCCGAG TTTGCCGAGACTCTGCACAAGATCAGCTTTGGTCAAATCTATCTCAGCAAGCCAATGATG ACTGAAGCCGATGGAGAGACAGCTACTTTATTTCCAAAATCAGCAAGGCTCAGGAACCTG ACATACTCTGCTCCACTGTATGTTGATGTGTCATACAGAGTAATGAAGAAAGGACATGAC TGTGAGGAAGTTACAGAGACTGCTGAGTATCCAAAAGTGTTTATTGGGAAGGTTCCAATC ATGTTGCGTTCTAGTTACTGCACACTGTATCAACAGTCTGAGAAGGATCTCACTGAACTT GGGGAGTGTCCTTATGATCAAGGTGGTTATTTCATTATCAATGGAAGCGAAAAGGTCCTT ATTGCCCAGGAGAAGATGAGCACCAACCATGTCTATGTTTTTAAGAAGAGGCAGCCTAAC AAATTCGCATATGTGGCTGAAGTCCGCTCCATGGCTGAGAACCAGAACAGACCAGCCAGC AGCATGTTTGTACGGATGCTTTCACGAGCAGGAGCAAAAGGGGGATCATCTGGTCAATAT ATCCGTGCTACTCTGCCTTATATTCGAGCGGACATTCCCATTATTATTGTATTTCGAGCA TTAGGATTTGTTGCCGACAAGGATATACTGGAGCATATATGTTATGACTTTTCTGATACA CAAATGATGGAATTGCTACGTCCATCCCTGGAGGAAGCTTTTGTCATTCAAAATCAACAG GTTGCTCTGGACTACATTGGAAAGCGTGGCGCAACAGTTGGTGTCACTCGAGAAAAGAGA ATTAAATACGCAAAGGAAATACTTCAGAAGGAAATGTTGCCTCATGTTGGTGTTGGGGAA TTCTGTGAAACTAAGAAGGCATACTATTTTGGGTATATTATTCACCGCCTACTGATGTGC GCTCTTAGTCGAAGAGCTGAGGATGACCGAGATCATTATGGAAACAAACGACTAGATCTT GCTGGTCCACTGCTTGGAGGGCTGTTTAGAATGCTTTTCAGGAAGTTAACAAGGGACGTG AGATCTTATGTGCAAAAGTGTGTAGATAATGGAAAGGAAGTTAATTTGCAATTTGCTATA AAAGCAAAAACTATTACCAGTGGTTTGAAGTACTCCCTTGCTACTGGAAACTGGGGACAG GCTAACCAAGCTGGAACCAGAGCAGGGGTTTCTCAGGTGCTCAATCGCCTGACCTATGCT TCTACACTTTCACATCTCCGGAGGCTTAACTCTCCCATTGGGCGTGAAGGAAAATTGGCA AAACCCCGCCAGTTGCATAATTCGCATTGGGGAATGATGTGTCCTGCTGAAACACCAGAA GGACAAGCTTGTGGCTTGGTGAAAAATCTTGCCTTGATGGTATATATCACTGTTGGTTCT GCCGCAAATCCAATTTTGGAATTTTTGGAGGAGTGGGGCACAGAAAATTTTGAGGAGATA TCACCAGCCGTCATTCCACAAGCTGCTAAAATTTTTGTCAATGGTTGTTGGGTTGGAATT CATAGGAACCCTGACCTGTTGGTTAAGACTCTTAGACGTTTAAGAAGACAGATTGATGTC AACACTGAAGTTGGTGTGGTGCGTGATATCCGTCTTAAAGAACTTCGACTCTACACGGAT TATGGACGCTGCAGTCGTCCATTGTTTATTGTTGAGGGCCAGAGGCTGCTCATCAAGAAG GCGCATATCCGAGCCTTGCAACAAAGGGAGACTCCTGATGAAGGCTGGCATGAATTGGTC TCAAAAGGATATATAGAATACATAGACACTGAAGAAGAGGAGACTACCATGATCTCCATG ACCATAAATGACCTTCAAAATGCAAGGCACAACCCAGAGGAGGCTTACTCTGAAACTTAC ACGCATTGTGAGATTCATCCTTCATTGATACTTGGTGTTTGTGCGTCGATTATACCTTTT CCTGATCACAACCAGTCACCTCGTAATACATATCAGTCTGCTATGGGAAAGCAAGCCATG GGAATTTATGTCACCAACTACCAATTAAGGATGGACACGTTGGCCTACGTTCTATACTAC CCACAAAAGCCTCTAGTTACTACTCGTGCTATGGAACATTTGCACTTCAGACAGTTACCA GCTGGCATTAATGCAATTGTTGCTATTGCTTGTTATTCTGGATATAATCAAGAAGATTCA GTTATTATGAATCAATCTTCCATAGATCGTGGGTTCTTTCGGTCACTATTTTTCCGCTCT TACAGAGACGAGGAAAAGAAGATGGGCACACTTATCAAAGAGGAATTTGGTCGTCCAAAT AGGGAAAATACTATGGGAATGCGCCATGGGTCATATGATAAACTAGATGATGATGGCCTT GCACCACCTGGAACAAGGGTCTCAGGGGAAGATGTCATTATTGGGAAGACATCTCCTATT CCACAAGATGACGCTCAAGGGCAAGCTTCTAGATACTCAAAGCGTGACCATAGTACTGCT CTGCGTCACAGTGAAAGTGGCATGGTAGATCAGGTTCTGTTAACAACAAATGCGGATGGT CTAAGATTTGTCAAGGTTAGGATGCGATCTGTTCGCATACCACAAATTGGCGACAAGTTT AGCAGCAGGCATGGACAAAAAGGAACTGTTGGGATGACTTACACTCAAGAGGATATGCCA TGGACAATCGAAGGCATTACACCTGATATTATTGTGAATCCACATGCTATTCCATCCCGT ATGACTATTGGGCAGCTGATTGAGTGTATTATGGGTAAAGTTGCTGCTCAGATGGGGAAG GAAGGCGATGCCACTCCATTCACGGATGTGACTGTGGATAACATCAGCAAAGCTCTTCAT AAATGTAATTATCAAATGCGTGGATTTGAGACAATGTACAATGGTCACACTGGAAGAAAA CTGACTGCGATGATTTTCCTGGGCCCCACATATTACCAAAGACTCAAGCACATGGTGGAT GACAAGATACATTCGAGAGGACGTGGTCCTGTGCAGATACTCACCCGGCAACCAGCAGAG GGGCGGTCTCGTGATGGAGGTCTCCGCTTTGGAGAAATGGAAAGGGATTGTATGATCGCA CATGGAGCAGCTTTCTTCCTGAAGGAAAGGCTGTTTGACCAGAGTGACGCATACAGAGTC CATGTATGCGAGAAATGTGGTCTCATCGCAATTGCTAACCTAAAGAAAAACTCGTTCGAA TGCAGGGGCTGCAAGAACAAGACTGACATTGTCCAAGTACACATACCCTATGCTTGTAAG CTTCTGTTTCAGGAGCTTATGGCAATGGCCATTGCTCCCAGAATGCTTACCCATGATATG AAGACAGGGAAGGATCAGAAGAAGCGCTGA

Peptide Sequence

PEP ID	Zm00001d013683_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:5:17282652:17295346:-1 gene:Zm00001d013683 transcript:Zm00001d013683_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase II subunit 2
Sequence	MEDDEYEDGMDMGYGGHHQRGGGHAGYGAEEDDEMGYGEGGGDGDEMEEEADGDAEQQED ITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD CEEVTETAEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVL IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQY IRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQ VALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMC ALSRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAI KAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLA KPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEI SPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTD YGRCSRPLFIVEGQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMISM TINDLQNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAM GIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDS VIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEEFGRPNRENTMGMRHGSYDKLDDDGL APPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTALRHSESGMVDQVLLTTNADG LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSR MTIGQLIECIMGKVAAQMGKEGDATPFTDVTVDNISKALHKCNYQMRGFETMYNGHTGRK LTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIA HGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACK LLFQELMAMAIAPRMLTHDMKTGKDQKKR

Transcript Sequence

Transcript ID	Zm00001d013683_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:17282652:17295346:-1 gene:Zm00001d013683 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase II subunit 2
Sequence	TGTGAACCATACATACTCCTTCGAGCACGTTCCCATTGCGCTTTCCCTCGCCATTTCGCC CCCGCCCCCCAATCTCTGCGTCTCTAGCTCTCGGGAGAGGCGGCTCGCCGCGACATCGAT CCCGACCGGGCACCGGCTCACCCCGGCCCCCAGCGTAGCAGCTCGCCACTAGGGCTAGCG CTCTGTCCATGGAGGATGACGAGTACGAGGATGGGATGGACATGGGCTACGGCGGGCATC ACCAGCGCGGCGGCGGCCACGCGGGGTACGGCGCGGAGGAGGACGACGAGATGGGGTATG GCGAGGGGGGTGGGGACGGGGACGAGATGGAGGAGGAGGCGGATGGGGACGCCGAGCAGC AGGAAGATATCACGCAGGACGACGCCTGGGCCGTCATCTCCGCCTACTTCGAGGAGAAGG GCCTCGTGCGCCAGCAGCTCGACTCCTTCGATGAGTTCATCCAGAACACCATGCAAGAGA TTGTCGATGAGTCCGCCGACATCGAGATCCGGCCCGAGTCGCAGCACAACCCCGGCCGTC AGGCCGAGTTTGCCGAGACTCTGCACAAGATCAGCTTTGGTCAAATCTATCTCAGCAAGC CAATGATGACTGAAGCCGATGGAGAGACAGCTACTTTATTTCCAAAATCAGCAAGGCTCA GGAACCTGACATACTCTGCTCCACTGTATGTTGATGTGTCATACAGAGTAATGAAGAAAG GACATGACTGTGAGGAAGTTACAGAGACTGCTGAGTATCCAAAAGTGTTTATTGGGAAGG TTCCAATCATGTTGCGTTCTAGTTACTGCACACTGTATCAACAGTCTGAGAAGGATCTCA CTGAACTTGGGGAGTGTCCTTATGATCAAGGTGGTTATTTCATTATCAATGGAAGCGAAA AGGTCCTTATTGCCCAGGAGAAGATGAGCACCAACCATGTCTATGTTTTTAAGAAGAGGC AGCCTAACAAATTCGCATATGTGGCTGAAGTCCGCTCCATGGCTGAGAACCAGAACAGAC CAGCCAGCAGCATGTTTGTACGGATGCTTTCACGAGCAGGAGCAAAAGGGGGATCATCTG GTCAATATATCCGTGCTACTCTGCCTTATATTCGAGCGGACATTCCCATTATTATTGTAT TTCGAGCATTAGGATTTGTTGCCGACAAGGATATACTGGAGCATATATGTTATGACTTTT CTGATACACAAATGATGGAATTGCTACGTCCATCCCTGGAGGAAGCTTTTGTCATTCAAA ATCAACAGGTTGCTCTGGACTACATTGGAAAGCGTGGCGCAACAGTTGGTGTCACTCGAG AAAAGAGAATTAAATACGCAAAGGAAATACTTCAGAAGGAAATGTTGCCTCATGTTGGTG TTGGGGAATTCTGTGAAACTAAGAAGGCATACTATTTTGGGTATATTATTCACCGCCTAC TGATGTGCGCTCTTAGTCGAAGAGCTGAGGATGACCGAGATCATTATGGAAACAAACGAC TAGATCTTGCTGGTCCACTGCTTGGAGGGCTGTTTAGAATGCTTTTCAGGAAGTTAACAA GGGACGTGAGATCTTATGTGCAAAAGTGTGTAGATAATGGAAAGGAAGTTAATTTGCAAT TTGCTATAAAAGCAAAAACTATTACCAGTGGTTTGAAGTACTCCCTTGCTACTGGAAACT GGGGACAGGCTAACCAAGCTGGAACCAGAGCAGGGGTTTCTCAGGTGCTCAATCGCCTGA CCTATGCTTCTACACTTTCACATCTCCGGAGGCTTAACTCTCCCATTGGGCGTGAAGGAA AATTGGCAAAACCCCGCCAGTTGCATAATTCGCATTGGGGAATGATGTGTCCTGCTGAAA CACCAGAAGGACAAGCTTGTGGCTTGGTGAAAAATCTTGCCTTGATGGTATATATCACTG TTGGTTCTGCCGCAAATCCAATTTTGGAATTTTTGGAGGAGTGGGGCACAGAAAATTTTG AGGAGATATCACCAGCCGTCATTCCACAAGCTGCTAAAATTTTTGTCAATGGTTGTTGGG TTGGAATTCATAGGAACCCTGACCTGTTGGTTAAGACTCTTAGACGTTTAAGAAGACAGA TTGATGTCAACACTGAAGTTGGTGTGGTGCGTGATATCCGTCTTAAAGAACTTCGACTCT ACACGGATTATGGACGCTGCAGTCGTCCATTGTTTATTGTTGAGGGCCAGAGGCTGCTCA TCAAGAAGGCGCATATCCGAGCCTTGCAACAAAGGGAGACTCCTGATGAAGGCTGGCATG AATTGGTCTCAAAAGGATATATAGAATACATAGACACTGAAGAAGAGGAGACTACCATGA TCTCCATGACCATAAATGACCTTCAAAATGCAAGGCACAACCCAGAGGAGGCTTACTCTG AAACTTACACGCATTGTGAGATTCATCCTTCATTGATACTTGGTGTTTGTGCGTCGATTA TACCTTTTCCTGATCACAACCAGTCACCTCGTAATACATATCAGTCTGCTATGGGAAAGC AAGCCATGGGAATTTATGTCACCAACTACCAATTAAGGATGGACACGTTGGCCTACGTTC TATACTACCCACAAAAGCCTCTAGTTACTACTCGTGCTATGGAACATTTGCACTTCAGAC AGTTACCAGCTGGCATTAATGCAATTGTTGCTATTGCTTGTTATTCTGGATATAATCAAG AAGATTCAGTTATTATGAATCAATCTTCCATAGATCGTGGGTTCTTTCGGTCACTATTTT TCCGCTCTTACAGAGACGAGGAAAAGAAGATGGGCACACTTATCAAAGAGGAATTTGGTC GTCCAAATAGGGAAAATACTATGGGAATGCGCCATGGGTCATATGATAAACTAGATGATG ATGGCCTTGCACCACCTGGAACAAGGGTCTCAGGGGAAGATGTCATTATTGGGAAGACAT CTCCTATTCCACAAGATGACGCTCAAGGGCAAGCTTCTAGATACTCAAAGCGTGACCATA GTACTGCTCTGCGTCACAGTGAAAGTGGCATGGTAGATCAGGTTCTGTTAACAACAAATG CGGATGGTCTAAGATTTGTCAAGGTTAGGATGCGATCTGTTCGCATACCACAAATTGGCG ACAAGTTTAGCAGCAGGCATGGACAAAAAGGAACTGTTGGGATGACTTACACTCAAGAGG ATATGCCATGGACAATCGAAGGCATTACACCTGATATTATTGTGAATCCACATGCTATTC CATCCCGTATGACTATTGGGCAGCTGATTGAGTGTATTATGGGTAAAGTTGCTGCTCAGA TGGGGAAGGAAGGCGATGCCACTCCATTCACGGATGTGACTGTGGATAACATCAGCAAAG CTCTTCATAAATGTAATTATCAAATGCGTGGATTTGAGACAATGTACAATGGTCACACTG GAAGAAAACTGACTGCGATGATTTTCCTGGGCCCCACATATTACCAAAGACTCAAGCACA TGGTGGATGACAAGATACATTCGAGAGGACGTGGTCCTGTGCAGATACTCACCCGGCAAC CAGCAGAGGGGCGGTCTCGTGATGGAGGTCTCCGCTTTGGAGAAATGGAAAGGGATTGTA TGATCGCACATGGAGCAGCTTTCTTCCTGAAGGAAAGGCTGTTTGACCAGAGTGACGCAT ACAGAGTCCATGTATGCGAGAAATGTGGTCTCATCGCAATTGCTAACCTAAAGAAAAACT CGTTCGAATGCAGGGGCTGCAAGAACAAGACTGACATTGTCCAAGTACACATACCCTATG CTTGTAAGCTTCTGTTTCAGGAGCTTATGGCAATGGCCATTGCTCCCAGAATGCTTACCC ATGATATGAAGACAGGGAAGGATCAGAAGAAGCGCTGAACGTGTATCACGTGAGATGTAA CCAGAACTCATGCCCCGTTGCTATATTCCTGGATCCTGGTTCACACAATAGTACCCTGTT GAGGAACTTTGTGGTCACTTCTTTTCTGATTTGGACTTCGGTTCTTCGCGATCGATGGAG GGCTGTTACTATCTCTTGATGGATTATTATCCTATCTGTGCTCGTGTTGCCTGAAGATCA GTGCTAGCAGATCGTCGAGTTAATTTTGTACATTAGGAATGTGTTGTAATGTATTAATCT GTGCGAGTAGAAAGATTTTTGACTAAAGGTGTCAATTTGGAGGTGTAACTGCCATTGCAA TTTCAGTTTTATTTTG