Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013589_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:5:14975076:14978944:1 gene:Zm00001d013589 gene_biotype:protein_coding transcript_biotype:protein_coding description:PH domain containing protein

Sequence

ATGGAGGCTACCAAGGAGATAGAAGCTGCACTAAAGGTTTCAATGAGGGCAGCCCTTGGG
TTGGGTACAAATAACTCCAACGATGGCCAACTTGATGACCTAACAATCATGAAGGAGACT
CTACGAGTGAAAGATGAGGAATTGCAACATTTGGCCAAGGATATACGTTCTCGAGATGCT
ACAATAAATGAAATAGCAGACAAACTAACAGAAACCGCAGAGGCTGCAGAAGCTGCTGCT
TCGGCAGCTCTCACAATGGATGAACAGAGGCGACTTTTGTGTTTGGAGATTGAGCGACTA
AAACAAGCCTTGGAAAGACAAGTAGAACAATCAATGCTGAAGCTTAGACAGTCCGAAGAG
AAGGTCATCAGCCTGAGCAAAGAGAAGGAGCAGTTGATGAAGGAAAGAGACGCTGCGTTT
CAAGAGGCTCATATGTGGCGCGTCGAACTAGGAAAAGCCAGGGAGCAAGCAGTGATACAG
GAAGCAACTATTGCCCGGACCGAGGAGAAGGCAAGAGTCTCCGAAGCAGATGCTGCAGCT
CGGATTAAGGAAGCTGCTGAAAAACTGCGTACTGTTGAGAAAGAAAAGGAGGAGCTTCTA
GCCCTGGTTGGTGTTCTCCAGTCACAAGTCCAGAGAGAGCAGAGCAGCACAAAGCAAGTG
TGTGGGGAGAGGTCTGAGTCGTGTTCAGGCGCCGACAGCCCCCCTCCCCTGACAAAGCAT
GTTGATGCATCGGACGATGACGTGGACAAAGCCTGCGTGAGTGACTCTAGATCAGTGCTG
GTGTCGAGCGACAGCACTGAGGTCCAGCTGGCTGTGGACGGGGTGGACATCCGTCCTGTC
GGCGACGCAGAGTGGGGTGGCTTCCAGCAGTCAGATGCGCTGATCGCTGATGTCCGTGAG
GTCTCCCCAGAGGCAGATGGAGGCAGCTTGGACATTCCTGTGGTCAACCCTCCACCGATC
AGTGATCATGTTCAGGGAGGCGCAACTCATCCCTGA

Peptide Sequence

PEP ID

Zm00001d013589_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:5:14975076:14978944:1 gene:Zm00001d013589 transcript:Zm00001d013589_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:PH domain containing protein

Sequence

MEATKEIEAALKVSMRAALGLGTNNSNDGQLDDLTIMKETLRVKDEELQHLAKDIRSRDA
TINEIADKLTETAEAAEAAASAALTMDEQRRLLCLEIERLKQALERQVEQSMLKLRQSEE
KVISLSKEKEQLMKERDAAFQEAHMWRVELGKAREQAVIQEATIARTEEKARVSEADAAA
RIKEAAEKLRTVEKEKEELLALVGVLQSQVQREQSSTKQVCGERSESCSGADSPPPLTKH
VDASDDDVDKACVSDSRSVLVSSDSTEVQLAVDGVDIRPVGDAEWGGFQQSDALIADVRE
VSPEADGGSLDIPVVNPPPISDHVQGGATHP

Transcript Sequence

Transcript ID

Zm00001d013589_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:14975076:14978944:1 gene:Zm00001d013589 gene_biotype:protein_coding transcript_biotype:protein_coding description:PH domain containing protein

Sequence

CCACCAACCTGCTCGCTCCGTCCGTCGCCGTCGCCGACCCGCCACCATCTCCGCCCTCCA
AAACCCTACTACCCCTGTAGCCTGCAGCCCCGTGCCCGCCATGGCTACCAACGGCAGCTC
CGTGGTACGCGCGTCAAGGCCTAGTATGTCAGCTTCTGTTTCAGATTGGTAGTGTTTTTG
TTGATGTTTTTTATGGCGGTGGGGGATTTTGCAGAGGGTTCGGGACACGGAGAGCAGCCT
GGAGAAGGTGAAGCGGCAGCTGTCGTCGGGGTCCGGGAGGTACCTGCTGCAAGGGCCCCT
GCTCAAGCGATCTGAGACGGTATGACAATTCCTGGCCCAAGTCAAGTCGTTCATTGGGTG
ATGGATTGCATTTGTTTGATTAAGCGTGTGAAGATTTGAACTTGGTGCTAGATTTTGTTA
ACCGTAGGGCTGAGGTGTTGAAGGGTTCAGCTTTGTCACTGAATTTTGGTGTTAGTATAG
GTTGATTATGTAGTAGTAACTGATATGGTTAGTTGTGGGGGCTGTATCATTAGATTGCGT
GGGTGGAAATGTGAATGGTGGGGATGACTACACATTGCATAGGAACTCTGTTAGAAAGTA
CTATTGGGTGATTCACCTGGACCAACTGTTTTCGTATGCACAACTGTATGATACTAGTGA
ACATAGTTTTTGTCTTTTCCTGATGAGGCTGTCCTTGTGAGTTTTATCTAATAATATCAT
CCTCCAAACCCTTATGGCCTTTCAAGCAGTTACGGAAATGGAATGAACGATGGGTCATAT
TGGATCCGACATCTGGGAAGATGGAATACAAGTATGGAACCTTGCCTGTTTAATAACCGG
GAATGCCAAGTAAAATTACAACTAATACCTGATCAGAAGCCACTGATGTATTGGTGCAGA
CTCCGGAGAAATGAAACTGTCATTAAGGGCAGTGTTCTTAAGGCGTCGCCTAGGCGTCGC
CTAGGCGACGCCTAGGCGTCCAGGCGCCCGGGCAAAACTGGCCGCCTTGCTCGCCATACC
CGCCTAGGCGTCGCCTAGGCGCCGCCTAGGCGCTAAGGCGGTTGGCTGGTGCACTTGCTC
GCCTAGGCGCCGTAAGAACACTGATTAAGGGGACCATTCTGTTTGATGCCTCAAGCACCA
TTACTTTATCTCCTGTGAACTTTCAGTAAGATTGGATCATGAACGTAACCTTTACATAGC
ATGTCGTATCTAAGTTTTTAGCGTTATAACCTATAATTATTGCTCAACTTTTTGCAGAGG
GATGCCAAAATACGATGGCTGCTGCTTCTGTATCCTGTTTTCCTATATTTTGGTCAAAGA
GATTATTGTTTCAGAAAGAGTTTCTTAAATAGTTATAGAGGAATCACATGGTTTAAGGTT
TTACTGTTCCTTTACTGTATTTAGACATTGGGACTCCTCAAAAGAAGGAATACTTTCTTT
GCGCTGAAACTCCTGGTGCTGCAAAAGCTTGGGTATCTACATTACACGCAACTCAGTTAG
TCTTACGAGCTCATAAAGAGGCAGTAAATTCTTTGGCTGGGAATGGCTCTCCAGCTACAT
TAGGCACAGTTGCTACTGCAGTTGCTAATGCTAATGCAACAGCCATGGAGGCTACCAAGG
AGATAGAAGCTGCACTAAAGGTTTCAATGAGGGCAGCCCTTGGGTTGGGTACAAATAACT
CCAACGATGGCCAACTTGATGACCTAACAATCATGAAGGAGACTCTACGAGTGAAAGATG
AGGAATTGCAACATTTGGCCAAGGATATACGTTCTCGAGATGCTACAATAAATGAAATAG
CAGACAAACTAACAGAAACCGCAGAGGCTGCAGAAGCTGCTGCTTCGGCAGCTCTCACAA
TGGATGAACAGAGGCGACTTTTGTGTTTGGAGATTGAGCGACTAAAACAAGCCTTGGAAA
GACAAGTAGAACAATCAATGCTGAAGCTTAGACAGTCCGAAGAGAAGGTCATCAGCCTGA
GCAAAGAGAAGGAGCAGTTGATGAAGGAAAGAGACGCTGCGTTTCAAGAGGCTCATATGT
GGCGCGTCGAACTAGGAAAAGCCAGGGAGCAAGCAGTGATACAGGAAGCAACTATTGCCC
GGACCGAGGAGAAGGCAAGAGTCTCCGAAGCAGATGCTGCAGCTCGGATTAAGGAAGCTG
CTGAAAAACTGCGTACTGTTGAGAAAGAAAAGGAGGAGCTTCTAGCCCTGGTTGGTGTTC
TCCAGTCACAAGTCCAGAGAGAGCAGAGCAGCACAAAGCAAGTGTGTGGGGAGAGGTCTG
AGTCGTGTTCAGGCGCCGACAGCCCCCCTCCCCTGACAAAGCATGTTGATGCATCGGACG
ATGACGTGGACAAAGCCTGCGTGAGTGACTCTAGATCAGTGCTGGTGTCGAGCGACAGCA
CTGAGGTCCAGCTGGCTGTGGACGGGGTGGACATCCGTCCTGTCGGCGACGCAGAGTGGG
GTGGCTTCCAGCAGTCAGATGCGCTGATCGCTGATGTCCGTGAGGTCTCCCCAGAGGCAG
ATGGAGGCAGCTTGGACATTCCTGTGGTCAACCCTCCACCGATCAGTGATCATGTTCAGG
GAGGCGCAACTCATCCCTGAAGGCCTGAGGTTGCTGGCTTGCTGCTGCCTTCCGAGATTG
GTGTGGTTGCTGGGAAACCGATAGGGATGTCTAAATCTGGAGAGTCGCCGTTGAGGGTGC
ATATTGCATCGATGCGATTGTATGTCCATTGAGGTATACGATTGAATAAAAAGGTAGTAA
CTGTGTCTGGCTGTGGGATTGTAAATATTCGCCTCATTCCCTTTTGCTACGGCTATTCAC
GTGTGATATTTTAGC