Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013566_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:14436596:14439664:1 gene:Zm00001d013566 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGTTGAGAATCCCGCCGTCTCCGAGAGCCACCACGACGTGGCTTTGGCGGACGCGGAG
GTCGTGGCAGCCCCGTACGATCCCAAGACGAACTACCTCTCCCCGAGGCCTCGGTACCTC
CGCTACCAGCCCAACCGCCGCCTCGAGATTTACCGTCATGGCGGCGGGAGCGTGCGGGGG
CTCGAGGACATGTTCGCTTCCCAGAGCAGCAGCGAGGAGGTCGACACTGCGACCACCACG
GAGGAGGAAGTATCCGGAGAAGGGCAGCCAGATGACTCCTCGGAGGAGGAGACCTCGGCT
ATGGCCCCTCCACCGGAGGCCAGAGCTCAGTCTACTGCTCCGGCCCTGGATCGCCTCCTG
CTGCCGCAGCCCGCGCTGGATTCGCCACTAGCTCGGGTCCTGACACCGGAGCCGAAGGAG
TCTCCGCGAGCTGGTGGCGTCTTGATACCTGAGCGGGAACGTGCAGTGAGCCCCGCGCGA
GCTCGTCCCAAGAAGAAGAGGTCACCAGTGAGGTTCCTGCTTGCCCCTCTTGCTCTGGTT
CTGTTGATGGCTGCAGCGTTTGTCTGTGTTCCACCGCCGCCGGGTTATCCGGTCATGCTG
AACACCTCCATGTCAAAGGTGTCAGTCTTACTTTCAGTTCAAGAATTGCATCCTGTGGAG
TTGGCTGCTAGGCTGAAGCAATGGTCTAGCAGTTCGTTGGACTTCGTCACGTCCTACTGG
GAGGCTATTGCATCTTACCAAGAACGACCTGTCCTTGGTCCGCACTTGGCTGCCAATGTT
ACTGCTGCTGCTGCAGAAGTAGATGCAGATTACGCTGTTGGTTTCTACTACAGTGCTGCT
CAGACAAGCCCAACAAGTTTGGAGTTGGGGACTCATGATGTTGTTTCAGAAAATGATACT
GAGATGATTGCTGGGCCTGATGTGGAGGATCCGGTAACCTGTGATGACCCTGATGCAGAA
CCTATTGATGATATTGAAATGGAACAGGAAGATTTATCTGAGGTACCAAGTGCCATGGAG
GAGGTGAATGTTGATGCAGTAGTAGAGGAGTTCGATGATGAGATGGCCGAGGAAGTGTCT
GGTGGTAGTAGTGGAGAAGAGACGGCAGCCTTCATTCAGAATTCAGATATTCCTTCTCAA
TCCACTCCCGAGCCTGAACAGGCAAAGGGCATTGACGAGGTATCCTTGCAGCAAGATGTT
CAGACTGAGGATTCTGAGGATCATGCTGATGGCAAGGAGGATCAGCCAGCGCAGCATGGT
CAAAAGTTGGGATCAGATATGTGGTCAAGTTACTTGGACAAAGTATCGGATCCTGCTGCC
ATTGGTGCTGCTCTTGCTGCCATTATTGTTGCAGCTGTTGTGGCATTCCTTTACATGAGG
CAGAAGCAAACTCGTGTTGCCTCCAATGAACCAGCTGAGCAGGTGGAGCAAGTTGAGCAG
GTTGAACGAGTTGAGCAGGTTGAACAAGTTGATCAGGTTGAAACTCTTTCTGACTCAGGA
AGTAGCCAGGGGCATGTTGTTGCCAAGGGTTCACTGTTTCACAGTCCTGGCGTAGAAGCC
TCTGGCCCCTCACAGTATAGCAGCAGCTTGTCATCTGGGCTTGGCAGGAGGAGGAATACC
AAGGGTGAAGGCCTTGAGCCAGTAGTGTCGAGGAGAGACTCGACAGCTCAATCCACATCA
TCTTATGGTAGTTTCACCACATACCAGAAGATCCCTGCCAAGAAAGGAAACAAGGAGGAC
GAAGCGATGACCCCAGTCCGGCGCTCCAGCAGGCTGAGGAATGTGAAAACTCCTGAATCT
TAA

Peptide Sequence

PEP ID

Zm00001d013566_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:14436596:14439664:1 gene:Zm00001d013566 transcript:Zm00001d013566_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MVENPAVSESHHDVALADAEVVAAPYDPKTNYLSPRPRYLRYQPNRRLEIYRHGGGSVRG
LEDMFASQSSSEEVDTATTTEEEVSGEGQPDDSSEEETSAMAPPPEARAQSTAPALDRLL
LPQPALDSPLARVLTPEPKESPRAGGVLIPERERAVSPARARPKKKRSPVRFLLAPLALV
LLMAAAFVCVPPPPGYPVMLNTSMSKVSVLLSVQELHPVELAARLKQWSSSSLDFVTSYW
EAIASYQERPVLGPHLAANVTAAAAEVDADYAVGFYYSAAQTSPTSLELGTHDVVSENDT
EMIAGPDVEDPVTCDDPDAEPIDDIEMEQEDLSEVPSAMEEVNVDAVVEEFDDEMAEEVS
GGSSGEETAAFIQNSDIPSQSTPEPEQAKGIDEVSLQQDVQTEDSEDHADGKEDQPAQHG
QKLGSDMWSSYLDKVSDPAAIGAALAAIIVAAVVAFLYMRQKQTRVASNEPAEQVEQVEQ
VERVEQVEQVDQVETLSDSGSSQGHVVAKGSLFHSPGVEASGPSQYSSSLSSGLGRRRNT
KGEGLEPVVSRRDSTAQSTSSYGSFTTYQKIPAKKGNKEDEAMTPVRRSSRLRNVKTPES

Transcript Sequence

Transcript ID

Zm00001d013566_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:14436596:14439664:1 gene:Zm00001d013566 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGATCCGCCATACGCCCATCCCATCCCCTCTCCTCACTCAGCTCTCCTCGGCCTCCTCCA
AGGCCGTCGCGCCGGCTTTCACGCCAAGAAAGAAGGTATTCGGCGAGCGCAACAACGATG
CCGTCCCTTCGTCGCCAGTGGACCTTGCGCACAGCAGTAAGCCCAGGGCTGCGCATCCGC
TGCTGCCAGAAGAGGCTCTGGGCGTGCCGAGGCGTCTGCGGCTCTCACTGGACGGCGCCT
CTGCCCTTCCTTCCGCGGCTGGGCCTGTCGTTTCGCGCGGCGCCCCGTCGTTCGGAGGTG
ACGAGGCCGCCGTGATGGTTGAGAATCCCGCCGTCTCCGAGAGCCACCACGACGTGGCTT
TGGCGGACGCGGAGGTCGTGGCAGCCCCGTACGATCCCAAGACGAACTACCTCTCCCCGA
GGCCTCGGTACCTCCGCTACCAGCCCAACCGCCGCCTCGAGATTTACCGTCATGGCGGCG
GGAGCGTGCGGGGGCTCGAGGACATGTTCGCTTCCCAGAGCAGCAGCGAGGAGGTCGACA
CTGCGACCACCACGGAGGAGGAAGTATCCGGAGAAGGGCAGCCAGATGACTCCTCGGAGG
AGGAGACCTCGGCTATGGCCCCTCCACCGGAGGCCAGAGCTCAGTCTACTGCTCCGGCCC
TGGATCGCCTCCTGCTGCCGCAGCCCGCGCTGGATTCGCCACTAGCTCGGGTCCTGACAC
CGGAGCCGAAGGAGTCTCCGCGAGCTGGTGGCGTCTTGATACCTGAGCGGGAACGTGCAG
TGAGCCCCGCGCGAGCTCGTCCCAAGAAGAAGAGGTCACCAGTGAGGTTCCTGCTTGCCC
CTCTTGCTCTGGTTCTGTTGATGGCTGCAGCGTTTGTCTGTGTTCCACCGCCGCCGGGTT
ATCCGGTCATGCTGAACACCTCCATGTCAAAGGTGTCAGTCTTACTTTCAGTTCAAGAAT
TGCATCCTGTGGAGTTGGCTGCTAGGCTGAAGCAATGGTCTAGCAGTTCGTTGGACTTCG
TCACGTCCTACTGGGAGGCTATTGCATCTTACCAAGAACGACCTGTCCTTGGTCCGCACT
TGGCTGCCAATGTTACTGCTGCTGCTGCAGAAGTAGATGCAGATTACGCTGTTGGTTTCT
ACTACAGTGCTGCTCAGACAAGCCCAACAAGTTTGGAGTTGGGGACTCATGATGTTGTTT
CAGAAAATGATACTGAGATGATTGCTGGGCCTGATGTGGAGGATCCGGTAACCTGTGATG
ACCCTGATGCAGAACCTATTGATGATATTGAAATGGAACAGGAAGATTTATCTGAGGTAC
CAAGTGCCATGGAGGAGGTGAATGTTGATGCAGTAGTAGAGGAGTTCGATGATGAGATGG
CCGAGGAAGTGTCTGGTGGTAGTAGTGGAGAAGAGACGGCAGCCTTCATTCAGAATTCAG
ATATTCCTTCTCAATCCACTCCCGAGCCTGAACAGGCAAAGGGCATTGACGAGGTATCCT
TGCAGCAAGATGTTCAGACTGAGGATTCTGAGGATCATGCTGATGGCAAGGAGGATCAGC
CAGCGCAGCATGGTCAAAAGTTGGGATCAGATATGTGGTCAAGTTACTTGGACAAAGTAT
CGGATCCTGCTGCCATTGGTGCTGCTCTTGCTGCCATTATTGTTGCAGCTGTTGTGGCAT
TCCTTTACATGAGGCAGAAGCAAACTCGTGTTGCCTCCAATGAACCAGCTGAGCAGGTGG
AGCAAGTTGAGCAGGTTGAACGAGTTGAGCAGGTTGAACAAGTTGATCAGGTTGAAACTC
TTTCTGACTCAGGAAGTAGCCAGGGGCATGTTGTTGCCAAGGGTTCACTGTTTCACAGTC
CTGGCGTAGAAGCCTCTGGCCCCTCACAGTATAGCAGCAGCTTGTCATCTGGGCTTGGCA
GGAGGAGGAATACCAAGGGTGAAGGCCTTGAGCCAGTAGTGTCGAGGAGAGACTCGACAG
CTCAATCCACATCATCTTATGGTAGTTTCACCACATACCAGAAGATCCCTGCCAAGAAAG
GAAACAAGGAGGACGAAGCGATGACCCCAGTCCGGCGCTCCAGCAGGCTGAGGAATGTGA
AAACTCCTGAATCTTAAGATTGGCGCAAGCTGGCATCTGAACTGCCTTTTAGATTATTAG
ATAATTGCTATTGCCACTTTGTTTGCTGCTTAGTGAAGCATCATGTGTCTAGGCAATCAA
CAGGTTTGCGTGATGTTTGATAAACAGCTCTCTGCTGTTTTTACTTCAAAAGATGATTAG
GACTTGTGTGTTCAGTATAACTGCTTAAGATTTAATTGATGTTGACTTGCTCGTTGTACT
GCTCTCTGTTTGAGATGAATCCTCTGTTTTAG