Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013542_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:13953891:13960814:1 gene:Zm00001d013542 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:argonaute108 description: argonaute108
Sequence

ATGTCGACGCGCGACGGCGGAGGCGGCCGGCGTGGCGGCAATGCAGCAGCAGGCCGTGGA
GGTGACGGCCAAGGGCGGGGCCGTGGAGGGGGCGGCCGAGGTGGCGCCGGCGGCCGTGGC
GGTGGCGGCCAATGGCGGGCCCAAGGCGGCGCGGAGCTTGGCGGTGGCCGAGGTGGAGCC
GTCGGCGCAGCGCGTGGCGGCCGCGGAGGTGTCGAGAGAGGGGGTCACCAGTCCTTCCAC
GGCGCCAGGCCGGTCGGTGGGGACCGAGGCGGACGCGGACACTACCACCATGGCGTGCCT
GCTCAGGTCCAGCCGCAGTGGCAAGTGGCCGCGCCGCCTTCGACGTCGAGGCCGACACCC
GCGGAAGTCGAGGAGCTGAGAGGCGAGGTGGAGAGGAAGGCGGCGGTGGCGGTGCCAGAC
GCAGAGGCGCACGAGGGGCCGTCGTCGGGCACCGCGCATGAGCCTTCCGCCGCGCCGGCG
CGGGTCGAAGCGGAGCAAGGGACGTCGCTGGTGGTGGAGGCAGACCAGGCCGCTCAGGGG
AGGCTGCCTCCGTCGTCGAGCAAGGCGCTGGTTTTCCCCGCGCGGCCGGGGTACGGCACG
CTCGGCCGGAGGTGCCGCGTGCGCGCCAACCATTTCTTCGTTCAGGTGGCGGACAAGGAG
ATCTACCACTACGACGTCGTGATTAGTCCAGAATCGCAGTCAAGGAAAAGAAATCGTTGG
ATTCTTAACGAACTCGTTAAATTGCACAAGAATTACTTGAATGGGCGACTGCCTGTTTAT
GATGGTAGAAAGGGCCTTTTCACTGCTGGTCCGCTACCGTTCAAAACCAAAGAATTTGTT
CTGGAACTAACCAATCCTGAGAGAGCAAACCAGGGGGCGAAAGAGTACAGCGTGACCATA
AAAGATGCTGCCAAATTAGATCTTTACAGCCTTAGGCAGTTCTTGGCTGGTAGGCAGAGG
GAACTGCCACAGGATACTGTCCAAGCCCTCGATATTGCTATGCGAGAATGCCCAACTGAA
AAGTATGTATCCATCTCAAGGTCATTTTTCTCTCAGTCATTTGGACATGGTGGTGATATT
GGCAGTGGTGTGGAATGCTGGAGGGGGTACTACCAAAGTCTACGTGCTACACAAATGGGA
TTGTCTTTAAATATTGATATTTCAGCAACTGCATTTTACAAGGCTCAACCGATTTTGGAG
TTTGCATTGGAGTACCTCAACATACGTGACACCTCAAGGCGTTTGTCTGACCAGGATCGC
TTAAAACTGAAGAAAGTCCTCAAAGGAGTACGTGTTGTGGCAACACATCGTCGTGATATA
GCCATACATTACAAGATTACTGGGATAACCTCACTTCCCTTGAATAGTTTAACGTTTAAT
CAAGATGGGGCAAGTGTTTCAGTTGTCCAATACTTTAAACACCAATATAATTACAGTTTG
AAACACATTCACTGGCCATGCCTTCAATCTGGCAATGATAGTAGGCCGACTTATTTACCA
ATGGAGGTTTGCAGTATACTTGGCGGTCAACGCTATTCTAGGAAGCTAAATGAGTACCAA
GTCACAAGCATCCTGAAGAAGGCATGTGAGCGACCACCTCAAAGGGAGGGCAGCATTTTA
GAGGTAGTTAATAGGAACGACTATGGTAATGATCATTGTGCCAAAGAATTTGGTATTAAG
GTGACAAATGAACTTGCCTTGGTTGATGCACGGGTGCTGCCAGCTCCGACGCTTAAGTAC
CATGACTCTGGACGAGAAAAGGTGTGTAGTCCTTCCGTTGGTCAGTGGAACATGAACAAC
AAGAGATTGATCGATGGAGTATCCATTCAGTATTGGGCTTGTGTGACTTTTGCTTCTCGG
TTGCATCCAAATGATGTCCGCATGTTTTGCAACAACTTGGTTGGGGCGTGCAATGATATG
GGCATGCAAATAAATGGGAGACCTTGTGTTGATGTTGGGCAAGCACGCCCAGATAACTTA
GAAGCTGCACTCAGAAATACTCATAGACAATCTGCACAAATGCTTGCCCAACAAGGCGTG
ACTAGACAGCTTGATTTACTAATTGTTGTATTACCAGATGCAAATGCAAGTGTCTTTTAT
GGTAGGATAAAGCGTCTTTGTGAAACTGAACTTGGTTTAGTAACTCAATGTTGTCAACCA
AAGAATGTTTTTAAAGGTGGCCGACAATATCTCCAAAACCTGGCTCTTAAAATTAATGTT
AAGGTTGGTGGCCGTAATACAGTTCTCGAAGATGCTTTAAATAGGAGAATACATTTGTTA
ACAGATTTACCTACAATTATCTTTGGAGCTGATGTTACCCACCCAGCTCCAGGGGAAGAT
GCATCCCCGTCTATTGCAGCGGTTGTTGCATCAATGGATTGGCCACAAGTTGCAAAGTAC
AGGTGCTTGGTGTCTTCTCAAGGTCATAGGGAAGAGATCATAACTGATCTTTTCACACAA
GTGAAGGATCCACAAAAGGGACTTATTAACGGTGGAATGATCAGGCATGCCGAACATCTT
AGGGAACTACTCGTGTCATTCTATAAGGCAAACGGGAGCCGCAAACCAAGCAGGATAATT
TTCTATCGAGATGGTGTCAGTGAGGGGCAGTTTAGCCAGGTCTTGCTTTATGAAGTGGAT
GCAATTCGAAAGGCGTGTGCCAGCTTGGAAGAGGGCTACCTTCCTCCAATTACATTCATT
GTGGTGCAAAAGCGCCATCACACACGGCTTTTCCCTGAAGATCATCATGCACACGGACAG
ATGGATCGAAGTGGAAACATTTTGCCAGGAACTGTTGTTGACACGAAGATATGCCATCCA
AGTGAATTCGACTTCTACCTTTGTAGCCACTCTGGCATACAGGGAACGAGCCGGCCAGCA
CACTACCATGTTCTGTTTGACGAAAACAAATTCACTGCCGATGCACTGCAAACGTTGACC
TACAAACTGTGCTACACGTATGCGCGATGCACTCGATCAGTCTCTATAGTTCCCCCGGCG
TACTACGCACACCTGGCGGCCTTCCGTGCGCGCCACTACATGGACGATGACCTCTCCGAC
CAGGGGTCGTCTTCAGTGGCGAGTTCTCGCATGAAAGATGGCGCTGTTCCGGTGAAGCAG
CTGCCGAAAGTGATGGAGAGCGTCAAACAGTTCATGTTCTACTGCTGA

Peptide Sequence

PEP ID

Zm00001d013542_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:13953891:13960814:1 gene:Zm00001d013542 transcript:Zm00001d013542_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:argonaute108 description: argonaute108
Sequence

MSTRDGGGGRRGGNAAAGRGGDGQGRGRGGGGRGGAGGRGGGGQWRAQGGAELGGGRGGA
VGAARGGRGGVERGGHQSFHGARPVGGDRGGRGHYHHGVPAQVQPQWQVAAPPSTSRPTP
AEVEELRGEVERKAAVAVPDAEAHEGPSSGTAHEPSAAPARVEAEQGTSLVVEADQAAQG
RLPPSSSKALVFPARPGYGTLGRRCRVRANHFFVQVADKEIYHYDVVISPESQSRKRNRW
ILNELVKLHKNYLNGRLPVYDGRKGLFTAGPLPFKTKEFVLELTNPERANQGAKEYSVTI
KDAAKLDLYSLRQFLAGRQRELPQDTVQALDIAMRECPTEKYVSISRSFFSQSFGHGGDI
GSGVECWRGYYQSLRATQMGLSLNIDISATAFYKAQPILEFALEYLNIRDTSRRLSDQDR
LKLKKVLKGVRVVATHRRDIAIHYKITGITSLPLNSLTFNQDGASVSVVQYFKHQYNYSL
KHIHWPCLQSGNDSRPTYLPMEVCSILGGQRYSRKLNEYQVTSILKKACERPPQREGSIL
EVVNRNDYGNDHCAKEFGIKVTNELALVDARVLPAPTLKYHDSGREKVCSPSVGQWNMNN
KRLIDGVSIQYWACVTFASRLHPNDVRMFCNNLVGACNDMGMQINGRPCVDVGQARPDNL
EAALRNTHRQSAQMLAQQGVTRQLDLLIVVLPDANASVFYGRIKRLCETELGLVTQCCQP
KNVFKGGRQYLQNLALKINVKVGGRNTVLEDALNRRIHLLTDLPTIIFGADVTHPAPGED
ASPSIAAVVASMDWPQVAKYRCLVSSQGHREEIITDLFTQVKDPQKGLINGGMIRHAEHL
RELLVSFYKANGSRKPSRIIFYRDGVSEGQFSQVLLYEVDAIRKACASLEEGYLPPITFI
VVQKRHHTRLFPEDHHAHGQMDRSGNILPGTVVDTKICHPSEFDFYLCSHSGIQGTSRPA
HYHVLFDENKFTADALQTLTYKLCYTYARCTRSVSIVPPAYYAHLAAFRARHYMDDDLSD
QGSSSVASSRMKDGAVPVKQLPKVMESVKQFMFYC

Transcript Sequence

Transcript ID

Zm00001d013542_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:13953891:13960814:1 gene:Zm00001d013542 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:argonaute108 description: argonaute108
Sequence

AATCTCCTCCGCTCAAGCCGTAGTAGGGTTTCCGTAGCCCAGCCCATGTCGACGCGCGAC
GGCGGAGGCGGCCGGCGTGGCGGCAATGCAGCAGCAGGCCGTGGAGGTGACGGCCAAGGG
CGGGGCCGTGGAGGGGGCGGCCGAGGTGGCGCCGGCGGCCGTGGCGGTGGCGGCCAATGG
CGGGCCCAAGGCGGCGCGGAGCTTGGCGGTGGCCGAGGTGGAGCCGTCGGCGCAGCGCGT
GGCGGCCGCGGAGGTGTCGAGAGAGGGGGTCACCAGTCCTTCCACGGCGCCAGGCCGGTC
GGTGGGGACCGAGGCGGACGCGGACACTACCACCATGGCGTGCCTGCTCAGGTCCAGCCG
CAGTGGCAAGTGGCCGCGCCGCCTTCGACGTCGAGGCCGACACCCGCGGAAGTCGAGGAG
CTGAGAGGCGAGGTGGAGAGGAAGGCGGCGGTGGCGGTGCCAGACGCAGAGGCGCACGAG
GGGCCGTCGTCGGGCACCGCGCATGAGCCTTCCGCCGCGCCGGCGCGGGTCGAAGCGGAG
CAAGGGACGTCGCTGGTGGTGGAGGCAGACCAGGCCGCTCAGGGGAGGCTGCCTCCGTCG
TCGAGCAAGGCGCTGGTTTTCCCCGCGCGGCCGGGGTACGGCACGCTCGGCCGGAGGTGC
CGCGTGCGCGCCAACCATTTCTTCGTTCAGGTGGCGGACAAGGAGATCTACCACTACGAC
GTCGTGATTAGTCCAGAATCGCAGTCAAGGAAAAGAAATCGTTGGATTCTTAACGAACTC
GTTAAATTGCACAAGAATTACTTGAATGGGCGACTGCCTGTTTATGATGGTAGAAAGGGC
CTTTTCACTGCTGGTCCGCTACCGTTCAAAACCAAAGAATTTGTTCTGGAACTAACCAAT
CCTGAGAGAGCAAACCAGGGGGCGAAAGAGTACAGCGTGACCATAAAAGATGCTGCCAAA
TTAGATCTTTACAGCCTTAGGCAGTTCTTGGCTGGTAGGCAGAGGGAACTGCCACAGGAT
ACTGTCCAAGCCCTCGATATTGCTATGCGAGAATGCCCAACTGAAAAGTATGTATCCATC
TCAAGGTCATTTTTCTCTCAGTCATTTGGACATGGTGGTGATATTGGCAGTGGTGTGGAA
TGCTGGAGGGGGTACTACCAAAGTCTACGTGCTACACAAATGGGATTGTCTTTAAATATT
GATATTTCAGCAACTGCATTTTACAAGGCTCAACCGATTTTGGAGTTTGCATTGGAGTAC
CTCAACATACGTGACACCTCAAGGCGTTTGTCTGACCAGGATCGCTTAAAACTGAAGAAA
GTCCTCAAAGGAGTACGTGTTGTGGCAACACATCGTCGTGATATAGCCATACATTACAAG
ATTACTGGGATAACCTCACTTCCCTTGAATAGTTTAACGTTTAATCAAGATGGGGCAAGT
GTTTCAGTTGTCCAATACTTTAAACACCAATATAATTACAGTTTGAAACACATTCACTGG
CCATGCCTTCAATCTGGCAATGATAGTAGGCCGACTTATTTACCAATGGAGGTTTGCAGT
ATACTTGGCGGTCAACGCTATTCTAGGAAGCTAAATGAGTACCAAGTCACAAGCATCCTG
AAGAAGGCATGTGAGCGACCACCTCAAAGGGAGGGCAGCATTTTAGAGGTAGTTAATAGG
AACGACTATGGTAATGATCATTGTGCCAAAGAATTTGGTATTAAGGTGACAAATGAACTT
GCCTTGGTTGATGCACGGGTGCTGCCAGCTCCGACGCTTAAGTACCATGACTCTGGACGA
GAAAAGGTGTGTAGTCCTTCCGTTGGTCAGTGGAACATGAACAACAAGAGATTGATCGAT
GGAGTATCCATTCAGTATTGGGCTTGTGTGACTTTTGCTTCTCGGTTGCATCCAAATGAT
GTCCGCATGTTTTGCAACAACTTGGTTGGGGCGTGCAATGATATGGGCATGCAAATAAAT
GGGAGACCTTGTGTTGATGTTGGGCAAGCACGCCCAGATAACTTAGAAGCTGCACTCAGA
AATACTCATAGACAATCTGCACAAATGCTTGCCCAACAAGGCGTGACTAGACAGCTTGAT
TTACTAATTGTTGTATTACCAGATGCAAATGCAAGTGTCTTTTATGGTAGGATAAAGCGT
CTTTGTGAAACTGAACTTGGTTTAGTAACTCAATGTTGTCAACCAAAGAATGTTTTTAAA
GGTGGCCGACAATATCTCCAAAACCTGGCTCTTAAAATTAATGTTAAGGTTGGTGGCCGT
AATACAGTTCTCGAAGATGCTTTAAATAGGAGAATACATTTGTTAACAGATTTACCTACA
ATTATCTTTGGAGCTGATGTTACCCACCCAGCTCCAGGGGAAGATGCATCCCCGTCTATT
GCAGCGGTTGTTGCATCAATGGATTGGCCACAAGTTGCAAAGTACAGGTGCTTGGTGTCT
TCTCAAGGTCATAGGGAAGAGATCATAACTGATCTTTTCACACAAGTGAAGGATCCACAA
AAGGGACTTATTAACGGTGGAATGATCAGGCATGCCGAACATCTTAGGGAACTACTCGTG
TCATTCTATAAGGCAAACGGGAGCCGCAAACCAAGCAGGATAATTTTCTATCGAGATGGT
GTCAGTGAGGGGCAGTTTAGCCAGGTCTTGCTTTATGAAGTGGATGCAATTCGAAAGGCG
TGTGCCAGCTTGGAAGAGGGCTACCTTCCTCCAATTACATTCATTGTGGTGCAAAAGCGC
CATCACACACGGCTTTTCCCTGAAGATCATCATGCACACGGACAGATGGATCGAAGTGGA
AACATTTTGCCAGGAACTGTTGTTGACACGAAGATATGCCATCCAAGTGAATTCGACTTC
TACCTTTGTAGCCACTCTGGCATACAGGGAACGAGCCGGCCAGCACACTACCATGTTCTG
TTTGACGAAAACAAATTCACTGCCGATGCACTGCAAACGTTGACCTACAAACTGTGCTAC
ACGTATGCGCGATGCACTCGATCAGTCTCTATAGTTCCCCCGGCGTACTACGCACACCTG
GCGGCCTTCCGTGCGCGCCACTACATGGACGATGACCTCTCCGACCAGGGGTCGTCTTCA
GTGGCGAGTTCTCGCATGAAAGATGGCGCTGTTCCGGTGAAGCAGCTGCCGAAAGTGATG
GAGAGCGTCAAACAGTTCATGTTCTACTGCTGAAGGTGGCCTTTGCAGGAAGGACCTTCA
TCGACACTTTTGTTGCCATGAAATGAAACGAGTAATTCTGGGTTGGTGTAATTATGGTGA
AGTAACCCTGAAGGGTGGGCCGCACGACCTCCAAATCATATTTTGGGTCTGGCGAGTCTT
CTATCCAAAACTCGTCAGAAAACGCCTTTTATTTTTGGTGGACTTCGTATAAGTCCAAGG
CATTGCCTGTGATTTTGGGGTTTCTTTTAGGTTGCAACCTTGTTTTGTTTTTGAAATTTT
CTGCTTTGAATTGATGCATTATATATGAAGAAATGAGCCTCTCACG