Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013496_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:5:12780526:12785140:1 gene:Zm00001d013496 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alkaline phytoceramidase (aPHC)
Sequence

ATGGCAGATTCAATGGTAGCGAGCTTCTGGGGGCCTGTTACATCAACAACTGAGTTGTGC
GAGGAGAATTATGCACACTCATCATATATAGCAGAATTCTACAACACAATTTCTAATGTC
CCATGTGTTCTTTTGGCGCTTATTGGATTAGTGAATGCTTTCCGCCAAGGTTTTGAGAAG
CGATTCAGTGTCCTGCACATATCCAATATGATACTTGCTATTGGGAGTATGATTTTTCAT
GCCACCTTGCAACTTGTCCTACAACAGAGTGACGAGACTCCAATGGTCTGGGAGATCCTT
CTTTATATGTATGTCCTTTATTCGCCGGACTGGCATTACAGGAGCACAATGCCAACCTTC
CTTTTCCTATATGGTGCTGCCTTTGCTGTAGTTCATTTCTTTGCCCGGTTCCAATTCGTA
TTCAAGCTGCATTACATTGGCCTCTGCTTCCTCTGCATCCCCCGGATGTACAAGTACTAC
ATACAGACCAAAGACGTGGCTGCGAAGCGGCTCGCAAAGCTGTGGGTTCTCACGTTAACC
CTTGGGACTCTCTGCTGGCTAGTTGATCGCATCTTCTGCAAGAAGCTTTCGCATTGGTAT
GTCAACCCGCAGGGGCACGCATGGTGGCATGTGCTTATGGGCCTCAACTCATACTATGCA
AACACATTCCTAATGTTCTGTCGGGCTCAGCAGCGCGGGTGGGAGGCGCGAATCACCTAC
CTTCTTGGATTTTTGCCTTATGTCAAGGTCCAGAAACCAGAGAAGAAGAGGGAATGA

Peptide Sequence

PEP ID

Zm00001d013496_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:5:12780526:12785140:1 gene:Zm00001d013496 transcript:Zm00001d013496_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alkaline phytoceramidase (aPHC)
Sequence

MADSMVASFWGPVTSTTELCEENYAHSSYIAEFYNTISNVPCVLLALIGLVNAFRQGFEK
RFSVLHISNMILAIGSMIFHATLQLVLQQSDETPMVWEILLYMYVLYSPDWHYRSTMPTF
LFLYGAAFAVVHFFARFQFVFKLHYIGLCFLCIPRMYKYYIQTKDVAAKRLAKLWVLTLT
LGTLCWLVDRIFCKKLSHWYVNPQGHAWWHVLMGLNSYYANTFLMFCRAQQRGWEARITY
LLGFLPYVKVQKPEKKRE

Transcript Sequence

Transcript ID

Zm00001d013496_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:12780526:12785140:1 gene:Zm00001d013496 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alkaline phytoceramidase (aPHC)
Sequence

GCAGGTTATTTCTCTGAGGGCACTCATGATTTAGCACAAGTCATACTGATCTCTAACTCT
GGTGACATAAGCTGTTGTTAGGGTAGCAAATCAAGAGATAAAAATGGCAGATTCAATGGT
AGCGAGCTTCTGGGGGCCTGTTACATCAACAACTGAGTTGTGCGAGGAGAATTATGCACA
CTCATCATATATAGCAGAATTCTACAACACAATTTCTAATGTCCCATGTGTTCTTTTGGC
GCTTATTGGATTAGTGAATGCTTTCCGCCAAGGTTTTGAGAAGCGATTCAGTGTCCTGCA
CATATCCAATATGATACTTGCTATTGGGAGTATGATTTTTCATGCCACCTTGCAACTTGT
CCTACAACAGAGTGACGAGACTCCAATGGTCTGGGAGATCCTTCTTTATATGTATGTCCT
TTATTCGCCGGACTGGCATTACAGGAGCACAATGCCAACCTTCCTTTTCCTATATGGTGC
TGCCTTTGCTGTAGTTCATTTCTTTGCCCGGTTCCAATTCGTATTCAAGCTGCATTACAT
TGGCCTCTGCTTCCTCTGCATCCCCCGGATGTACAAGTACTACATACAGACCAAAGACGT
GGCTGCGAAGCGGCTCGCAAAGCTGTGGGTTCTCACGTTAACCCTTGGGACTCTCTGCTG
GCTAGTTGATCGCATCTTCTGCAAGAAGCTTTCGCATTGGTATGTCAACCCGCAGGGGCA
CGCATGGTGGCATGTGCTTATGGGCCTCAACTCATACTATGCAAACACATTCCTAATGTT
CTGTCGGGCTCAGCAGCGCGGGTGGGAGGCGCGAATCACCTACCTTCTTGGATTTTTGCC
TTATGTCAAGGTCCAGAAACCAGAGAAGAAGAGGGAATGATTTGTCTCTGCTTAACACTG
ATGCTACTCAGTCCACCGCCAGTAAGCTAATCCACCCAATGTGCGCAGACAAGTTGTGGC
ATTTTTGTATATGGGCATCCAAATGATTACGGACTATAAATGTTCTGATGTCACACTGGA
TTTCGCATCGAACGGAGATTAGTTGGAGTGGTTGGTTGGTGTCCTAGTTTTGGCCATCTT
TCTTTTGGTTTCTTTGCAATTGCCTTTTGGTGGTAATAGGACAGGGTTATTTGTTTATTC
GTTTGTCGTTGAATGGAGTCCAGTTGTACTAGTTATCATCACTCCGCATGGGGATACATC
CTTCCATATGATGAC