Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013493_T007
CDS Infomation	cds chromosome:B73_RefGen_v4:5:12701192:12704969:-1 gene:Zm00001d013493 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase5 description: lipoxygenase5
Sequence	ATGGGTTGGTGGATCCCAGGCAACGGGGGCCGTGGCAAGGTGGGGAAGGCGGCGCACCTG GAGGAGGCGGTGGTGTCGCTCAAGTCCACGGCGGACGGGGAGACCGTGTACCGGGTGAGC TTCGAGTGGGACGAGTCGCAGGGCATCCCGGGCGCCGTCCTGGTCAGGAACCTGCAGCAC GCCGAGTTCTTCCTCAAGACGCTCACCCTCGAGGGCGTCCCAGGCAAGGGCACCGTCGTC TTCGTCGCCAACTCGTGGGTCTACCCGCACAAGCTCTACTCCCAGGAACGCATCTTCTTC GCCAACGACACCTATCTGCCGAGCAAAATGCCGGCGGCGTTGGTGCCTTATCGGCAAGAT GAGCTCAAGATTCTCCGTGGCGACGATAATCCTGGACCATACCAGGAGCATGATCGCGTC TACCGTTACGACTACTACAATGACCTTGGTGATCCCGACAAGGGCGAAGAGCACGCTCGG CCGATCCTCGGTGGCAGCCAAGAACACCCGTATCCCCGTCGCTGCAGAACTGGCCGGCAC CCAACAAAGAAAGACCCAAATTCGGAGAGCAGGCTTTTCCTGCTGAACCTGAACATCTAC GTCCCGCGTGACGAACGCTTTGGGCATCTCAAGATGTCGGACTTCCTTGGGTACTCGCTG AAGACGATCATCGAGGCTGTTCTTCCAACACTGGGGACTTTCGTCGATGACACGCCCAAG GAGTTCGATTCGTTTGAGGATATCCTCGGGCTCTACGAGCTGGGCCCAGAGGCACCCAAC AACCCACTGATAGCAGAGATCAGGAAGAAGATCCCCAGCGAGTTCCTTCGAAGCATTCTG CCGAACGGTAGCCATGACCACCCGCTAAAGATGCCCCTTCCAAATGTCATCAAATCAGAT GTGTTGAAAAAGGCTCCGGAGTTTAAGTTTGGCTGGAGGACTGACGAAGAGTTCGCGAGA GAGACACTTGCAGGCGTGAACCCAGTAATCATCAAACGTCTGACGGAGTTCCCCGCTAAA AGCACCCTGGACCCAAGGCAGTACGGAGACCACACCAGCAAGATCACTGAAGCTCACATC CGGCATAACATGGGAGGCCTGTCGGTGCAGAACGCACTGAGGAACAAGAGGCTCTTCATC CTAGACCACCATGACCATTTCATGCCGTACCTCGACGAGATCAACGAGCTGGAGGGGAAC TTCATCTACGCCAGCAGGACCCTACTGTTCCTGAAGGACGATGGCACGCTGAAGCCCCTG GCCATCGAGCTGAGCCTGCCCCACCCTGACGGCCAGCAGCGCGGCGCGGTCAGCAAGGTG TACACCCCGGCTCACACCGGCGTCGAGGGCCACGTCTGGCAGCTCGCCAAGGCTTATGCC TGCGTAAACGACTCTGCCTGGCATCAGCTGATCAGCCACTGGCTGAACACGCACGCGGTG ATCGAGCCGTTCGTAATCGCGACAAACCGGCAGCTCAGCGTGGTGCATCCCGTGCACAAG CTGCTGAGCCCGCACTACCGTGACACGCTGAACATCAACGCCCTGGCACGCCAGACACTC ATCAACGCCGGCGGCGTCTTCGAGCGCACCGTGTTCCCTGCAAAGTACGCGCTGGGGATG TCGGCAGACGTGTACAAGAGCTGGAATTTCAACGAGCAGGCTCTCCCAGCAGATCTCGTC AAGAGAGGTGTGGCTGTGCCGGACCAGTCAAGCCCATATGGTGTCCGACTGCTGATCAAG GACTACCCCTATGCCGTTGACGGGCTCGTCATCTGGTGGGCGATCGAGCGGTGGGTCAAG GAGTACCTGGACGTCAGACGCCAAGGCGCTGGATGCGTTCAAAAGATTCGGGAGCCGGCT GGTGCAGATTGA

Peptide Sequence

PEP ID	Zm00001d013493_P007
PEP Infomation	pep chromosome:B73_RefGen_v4:5:12701192:12704969:-1 gene:Zm00001d013493 transcript:Zm00001d013493_T007 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase5 description: lipoxygenase5
Sequence	MGWWIPGNGGRGKVGKAAHLEEAVVSLKSTADGETVYRVSFEWDESQGIPGAVLVRNLQH AEFFLKTLTLEGVPGKGTVVFVANSWVYPHKLYSQERIFFANDTYLPSKMPAALVPYRQD ELKILRGDDNPGPYQEHDRVYRYDYYNDLGDPDKGEEHARPILGGSQEHPYPRRCRTGRH PTKKDPNSESRLFLLNLNIYVPRDERFGHLKMSDFLGYSLKTIIEAVLPTLGTFVDDTPK EFDSFEDILGLYELGPEAPNNPLIAEIRKKIPSEFLRSILPNGSHDHPLKMPLPNVIKSD VLKKAPEFKFGWRTDEEFARETLAGVNPVIIKRLTEFPAKSTLDPRQYGDHTSKITEAHI RHNMGGLSVQNALRNKRLFILDHHDHFMPYLDEINELEGNFIYASRTLLFLKDDGTLKPL AIELSLPHPDGQQRGAVSKVYTPAHTGVEGHVWQLAKAYACVNDSAWHQLISHWLNTHAV IEPFVIATNRQLSVVHPVHKLLSPHYRDTLNINALARQTLINAGGVFERTVFPAKYALGM SADVYKSWNFNEQALPADLVKRGVAVPDQSSPYGVRLLIKDYPYAVDGLVIWWAIERWVK EYLDVRRQGAGCVQKIREPAGAD

Transcript Sequence

Transcript ID	Zm00001d013493_T007
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:12701192:12704969:-1 gene:Zm00001d013493 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase5 description: lipoxygenase5
Sequence	TCATGGGTTGGTGGATCCCAGGCAACGGGGGCCGTGGCAAGGTGGGGAAGGCGGCGCACC TGGAGGAGGCGGTGGTGTCGCTCAAGTCCACGGCGGACGGGGAGACCGTGTACCGGGTGA GCTTCGAGTGGGACGAGTCGCAGGGCATCCCGGGCGCCGTCCTGGTCAGGAACCTGCAGC ACGCCGAGTTCTTCCTCAAGACGCTCACCCTCGAGGGCGTCCCAGGCAAGGGCACCGTCG TCTTCGTCGCCAACTCGTGGGTCTACCCGCACAAGCTCTACTCCCAGGAACGCATCTTCT TCGCCAACGACACCTATCTGCCGAGCAAAATGCCGGCGGCGTTGGTGCCTTATCGGCAAG ATGAGCTCAAGATTCTCCGTGGCGACGATAATCCTGGACCATACCAGGAGCATGATCGCG TCTACCGTTACGACTACTACAATGACCTTGGTGATCCCGACAAGGGCGAAGAGCACGCTC GGCCGATCCTCGGTGGCAGCCAAGAACACCCGTATCCCCGTCGCTGCAGAACTGGCCGGC ACCCAACAAAGAAAGACCCAAATTCGGAGAGCAGGCTTTTCCTGCTGAACCTGAACATCT ACGTCCCGCGTGACGAACGCTTTGGGCATCTCAAGATGTCGGACTTCCTTGGGTACTCGC TGAAGACGATCATCGAGGCTGTTCTTCCAACACTGGGGACTTTCGTCGATGACACGCCCA AGGAGTTCGATTCGTTTGAGGATATCCTCGGGCTCTACGAGCTGGGCCCAGAGGCACCCA ACAACCCACTGATAGCAGAGATCAGGAAGAAGATCCCCAGCGAGTTCCTTCGAAGCATTC TGCCGAACGGTAGCCATGACCACCCGCTAAAGATGCCCCTTCCAAATGTCATCAAATCAG ATGTGTTGAAAAAGGCTCCGGAGTTTAAGTTTGGCTGGAGGACTGACGAAGAGTTCGCGA GAGAGACACTTGCAGGCGTGAACCCAGTAATCATCAAACGTCTGACGGAGTTCCCCGCTA AAAGCACCCTGGACCCAAGGCAGTACGGAGACCACACCAGCAAGATCACTGAAGCTCACA TCCGGCATAACATGGGAGGCCTGTCGGTGCAGAACGCACTGAGGAACAAGAGGCTCTTCA TCCTAGACCACCATGACCATTTCATGCCGTACCTCGACGAGATCAACGAGCTGGAGGGGA ACTTCATCTACGCCAGCAGGACCCTACTGTTCCTGAAGGACGATGGCACGCTGAAGCCCC TGGCCATCGAGCTGAGCCTGCCCCACCCTGACGGCCAGCAGCGCGGCGCGGTCAGCAAGG TGTACACCCCGGCTCACACCGGCGTCGAGGGCCACGTCTGGCAGCTCGCCAAGGCTTATG CCTGCGTAAACGACTCTGCCTGGCATCAGCTGATCAGCCACTGGCTGAACACGCACGCGG TGATCGAGCCGTTCGTAATCGCGACAAACCGGCAGCTCAGCGTGGTGCATCCCGTGCACA AGCTGCTGAGCCCGCACTACCGTGACACGCTGAACATCAACGCCCTGGCACGCCAGACAC TCATCAACGCCGGCGGCGTCTTCGAGCGCACCGTGTTCCCTGCAAAGTACGCGCTGGGGA TGTCGGCAGACGTGTACAAGAGCTGGAATTTCAACGAGCAGGCTCTCCCAGCAGATCTCG TCAAGAGAGGTGTGGCTGTGCCGGACCAGTCAAGCCCATATGGTGTCCGACTGCTGATCA AGGACTACCCCTATGCCGTTGACGGGCTCGTCATCTGGTGGGCGATCGAGCGGTGGGTCA AGGAGTACCTGGACGTCAGACGCCAAGGCGCTGGATGCGTTCAAAAGATTCGGGAGCCGG CTGGTGCAGATTGAGAATCGGATCAAGACGATGAACGACAGTCCGGACTTGAAGAACCGG AAGGGGCCTGTGGAAATGCCGTACATGCTGCTGTACCCCAACACGTCGGACGTTACCGGC GAGAAGGCCGAGGGGCTTACTGCCATGGGCATTCCCAACAGCATCTCCATATGAGCCTGG GCAGATTGTGTCTCGTAGTAAATTGTTGTGCTGCGCCGTGCGATGTGTTTCTTCATTGGT TTTGTCAGTCTCAGGGTAGGGGATGGAGATCATACCATGATCTTTGTAGGGTTGAGAGAG GAGTCCACGCTTGAATATTGTTGTCATGTATGTAATTCTTGGTTAATAATAAAGTTCGTC AGTT