Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013469_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:5:12351164:12354990:1 gene:Zm00001d013469 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative phosphatidylinositol-4-phosphate-5-kinase

Sequence

ATGCTCTACAAGGAGGCCGCGGCTGTTGCGGGAGGGGCAACGTACACGCGGAAACTGCCC
CAGAGGAATACCCGGCGAGCAGCCAGCGGAGTCCCACGCTGGGCGTCGTCGGCGGCCACC
ACGCCTGAGAGTAAGCGACCCGGGCAGACCATCTCCAAGGGACACAAGAATTACGAGCTC
ATGCTGCAGCTGCAATTGGGCATCAGGCATTCCGTGGGAAAGTCTTCGGCCGTGCCGATG
CGAGCACTGCAACCGGGCGATTTTGACCCAGGGGAGAAGTTCTGGACACGGTTCCCACCA
GAGGGTTCGAAGGTTACGCTACCACATTCATCTGGAGAGTTCCGATGGAAGGACTACTGC
CCCATGGTGTTCAGGCATTTGAGGAAGTTGTTTGCTGTTGATACAGCGGATTACATGCTT
GCGATCTGTGGCAATGATGCTCTGAGGGAGCTGTCTTCACCCGGCAAAAGTGGGAGCTTC
TTTTACCTTACCCAAGATGACCGATTCATGATTAAGACAGTGAAGAAATCAGAAGTCAAG
CTGCTAATTCGAATGTTAAATAGCTACTACAACCATTTCAATCGATACAAGAACTCATTA
ATCACGAGGTTCTATGGTGTACACTGTGTGAAGCCCCTTAATGGACAAAAGGTCCGATTT
ATTGTCATGGGTAATCTGTTCTGTTCAGAATACCAGATACATCGCCGTTTTGATTTGAAA
GGTTCATCCTATGGACGAACAGCAGACAAGTTTGAAGATGAAATTGATGAGACAACTACA
CTCAAGGATTTGGACCTCAATTTTGTCTTCCGGTTGCAGCGATCTTGGTACACCGATCTC
CATGAACAATTGGGACGAGACTGTGATTTTTTGGAATCAGAAGGGATTATGGATTACAGT
TTCTTGGTAGGAGTTCACTTTTGTGATGACATCTCTGCCTCAAAGATGGGATCCTCTACT
TTTACTGCCTCTCCAAGTACTTGTTCTAACCATTGTGTTGATCCTGAACCAGAGCTTTTA
ACAAAGAGTGAGTCATTTCAAGGTGGTGGCACGCCAGAGCTTTGCTTCTCGGATGATGAT
TTTGATATGGTACCTGATTGCCACCGGAAACCTCTGATTAGACTTGGTGCACACATGCCA
GCCCGGGCAGAGCAAGCATCCAGGAGGAGTGAATTCGACCCGCTTCTCCTAACAGGTGGA
GGATTCCTGTTCCCAAACCAGACCGGCGAAGTGCATGATGTGATTTTATTCTTTGGGATA
ATTGACATCCTCCAGGATTACAGCTTAAGAAAGCGGGCCGAGCATGCTTACAAGTCATTA
CAGACAGATCCCAACTCGATCTCTGCCGTGGACCCGAAGCTCTACTCGAAGAGGTTCCAA
GACTTCATCGGCAGAATTTTTGTGGAAGATGGCTAA

Peptide Sequence

PEP ID

Zm00001d013469_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:5:12351164:12354990:1 gene:Zm00001d013469 transcript:Zm00001d013469_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative phosphatidylinositol-4-phosphate-5-kinase

Sequence

MLYKEAAAVAGGATYTRKLPQRNTRRAASGVPRWASSAATTPESKRPGQTISKGHKNYEL
MLQLQLGIRHSVGKSSAVPMRALQPGDFDPGEKFWTRFPPEGSKVTLPHSSGEFRWKDYC
PMVFRHLRKLFAVDTADYMLAICGNDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVK
LLIRMLNSYYNHFNRYKNSLITRFYGVHCVKPLNGQKVRFIVMGNLFCSEYQIHRRFDLK
GSSYGRTADKFEDEIDETTTLKDLDLNFVFRLQRSWYTDLHEQLGRDCDFLESEGIMDYS
FLVGVHFCDDISASKMGSSTFTASPSTCSNHCVDPEPELLTKSESFQGGGTPELCFSDDD
FDMVPDCHRKPLIRLGAHMPARAEQASRRSEFDPLLLTGGGFLFPNQTGEVHDVILFFGI
IDILQDYSLRKRAEHAYKSLQTDPNSISAVDPKLYSKRFQDFIGRIFVEDG

Transcript Sequence

Transcript ID

Zm00001d013469_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:12351164:12354990:1 gene:Zm00001d013469 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative phosphatidylinositol-4-phosphate-5-kinase

Sequence

GAGCTACGCCAACGGGGACTACTACGAGGGCCAGTGGCGGCGCAACTTCCAGGACGGCCA
CGGACGGTACGTCTGGGCCAACGGCAACCAGTACGTCGGGGAGTGGCGCGCCGGGGTGCT
CTCGGGCCGCGGCGTGCTCATCTGGGCCAATGGCAGCCGCTACGACGGGGTCTGGGAGAA
TGGCGTGCCCAGGGGGACTGGGGTCTTCACGTGGCCCGACGGCAGCCGGTACGTCGGCTC
CTGGCCTGGGACCTGCGTCGACCTGCCGGCTATAAGCGGCACGTTCTTCGCGCCGGTGGG
CGCTGGGGCTCCTGCTGCTGTGAGGAAGAGATCCTCCGTGGAGGGTGTGGGGGAGAAGGC
GACCCCGCGGATCTGCATCTGGGAGTCGGAGGGCGAGGCTGGAGACATTACTTGCGACAT
CGTTGACGCGCTCGAGGCGTCCATGCTCTACAAGGAGGCCGCGGCTGTTGCGGGAGGGGC
AACGTACACGCGGAAACTGCCCCAGAGGAATACCCGGCGAGCAGCCAGCGGAGTCCCACG
CTGGGCGTCGTCGGCGGCCACCACGCCTGAGAGTAAGCGACCCGGGCAGACCATCTCCAA
GGGACACAAGAATTACGAGCTCATGCTGCAGCTGCAATTGGGCATCAGGCATTCCGTGGG
AAAGTCTTCGGCCGTGCCGATGCGAGCACTGCAACCGGGCGATTTTGACCCAGGGGAGAA
GTTCTGGACACGGTTCCCACCAGAGGGTTCGAAGGTTACGCTACCACATTCATCTGGAGA
GTTCCGATGGAAGGACTACTGCCCCATGGTGTTCAGGCATTTGAGGAAGTTGTTTGCTGT
TGATACAGCGGATTACATGCTTGCGATCTGTGGCAATGATGCTCTGAGGGAGCTGTCTTC
ACCCGGCAAAAGTGGGAGCTTCTTTTACCTTACCCAAGATGACCGATTCATGATTAAGAC
AGTGAAGAAATCAGAAGTCAAGCTGCTAATTCGAATGTTAAATAGCTACTACAACCATTT
CAATCGATACAAGAACTCATTAATCACGAGGTTCTATGGTGTACACTGTGTGAAGCCCCT
TAATGGACAAAAGGTCCGATTTATTGTCATGGGTAATCTGTTCTGTTCAGAATACCAGAT
ACATCGCCGTTTTGATTTGAAAGGTTCATCCTATGGACGAACAGCAGACAAGTTTGAAGA
TGAAATTGATGAGACAACTACACTCAAGGATTTGGACCTCAATTTTGTCTTCCGGTTGCA
GCGATCTTGGTACACCGATCTCCATGAACAATTGGGACGAGACTGTGATTTTTTGGAATC
AGAAGGGATTATGGATTACAGTTTCTTGGTAGGAGTTCACTTTTGTGATGACATCTCTGC
CTCAAAGATGGGATCCTCTACTTTTACTGCCTCTCCAAGTACTTGTTCTAACCATTGTGT
TGATCCTGAACCAGAGCTTTTAACAAAGAGTGAGTCATTTCAAGGTGGTGGCACGCCAGA
GCTTTGCTTCTCGGATGATGATTTTGATATGGTACCTGATTGCCACCGGAAACCTCTGAT
TAGACTTGGTGCACACATGCCAGCCCGGGCAGAGCAAGCATCCAGGAGGAGTGAATTCGA
CCCGCTTCTCCTAACAGGTGGAGGATTCCTGTTCCCAAACCAGACCGGCGAAGTGCATGA
TGTGATTTTATTCTTTGGGATAATTGACATCCTCCAGGATTACAGCTTAAGAAAGCGGGC
CGAGCATGCTTACAAGTCATTACAGACAGATCCCAACTCGATCTCTGCCGTGGACCCGAA
GCTCTACTCGAAGAGGTTCCAAGACTTCATCGGCAGAATTTTTGTGGAAGATGGCTAACT
GGCATTGGATAGAGATTAACCGCGAATTCCATGCGGAGGCCAGAGCACCTGTAATGATTC
CGGGACAGTTTTTTTGCGCTCAGTAAAGAAGTCTGCATAATTGCCAAGAATCATCTTCAT
CCATGGGGATCCGGTAAAGCAGCAGCCCCTCGGCTGGGTGTAACCTACTGTGAAGCATCA
GGTCAGCAGTGAAGGAGATCTGAGTTCGAAGCAAATTTGCCGCGAATTCTCCGGAAATCA
TTCGAGTGGCTGGATTTTGAAGCGCAGCCATGGGATCGGAGGATTTTGTCTGTAAAATGA
TGTGATTCGGCGGGTGAGAGACTGGTTCTTCCGGGTCCATTGTAGCAGCAGTCCTTTTTT
TTTATCTCCTTAGTTTTGTTGGAGTTCTTTTCCCCCCGCTCCCCTTCTATATATATCGTT
CCGATGTGAGGAATGGGGCAGGGAGTTTTGTTTCCAGAAAGATGATATTTAAGGCTGCGG
CTGGCAGTGAACAATAAGATCATGTACAGATACACCTTGATCCTGGGAATGGGTGGATTA
GAATTGAATTCAGCATCTTCATGACCCGTGGGCCCCAGACCACTGCTTCTCCCCT