Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013466_T009
CDS Infomation	cds chromosome:B73_RefGen_v4:5:12268699:12273312:1 gene:Zm00001d013466 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ring hc protein1 description:Transmembrane Fragile-X-F-associated protein
Sequence	ATGGCAGGTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGGATTGCA GAATGCTTTGCATTTCTTGTCTGTACAAGATGGTTTAATCCCATGATTCACAAGTCTCCC ACTCATGGGGAGGCTAGCTCATCATCAGCGATTAGATACCGTGATTGGGAAAGTGGTCTT GTCCTCCCATCACTAGAAGATCATGAACAAGAGAGGCTTTGTGGTCTACCTGATATTGGG GGTCATGTAATGAAAATACCTCTTGTGGCTTTCCAAGTATTGCTTTGTATGCGGTTGGAG GGTACACCACCAAGTGCTCGCAACATTCCAATATTTGCTCTTTTCTCGCCACTATTTATT CTGCAAGGTGCTGGTGCCTTTTTCTCTCTAGCAAGATTAGTGGAGAAGGTTGTTCTGCTA TTGCGCAATGGACCAGTTAGTCCTAATTACCTTACAGTCTCATCAAAAGTTCGTGATTGC TTTGCTTTTCTTCATCATGGTTCAAGGCTTCTTGGTTGGTGGTCTATTGATGAAGGGAGC AAGGAGGAACAAGCCCGGTTGTTCTATACTGAATCTACTGGGTACAATACATTTTGTGGC TATCCACCAGAAGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGGTTTGGAGG CTGCAGGCAGCGTTGGGAGAACAATCTGAAATCACCAAGTGTACCAAACAGGAATATGAA AGGCTTCAAAATGAGAAGGTTCTTTGTAGGGTTTGCTACGAGGGAGAGATATGCATGGTG CTTCTTCCCTGCCGGCACAGAACTTTATGCAAGTATGATTCAGTCTTTTTTGTTCTTTTC ATATATGCCCTTCCTAGCTAG

Peptide Sequence

PEP ID	Zm00001d013466_P009
PEP Infomation	pep chromosome:B73_RefGen_v4:5:12268699:12273312:1 gene:Zm00001d013466 transcript:Zm00001d013466_T009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ring hc protein1 description:Transmembrane Fragile-X-F-associated protein
Sequence	MAGDVGALGWWDLFINYGIAECFAFLVCTRWFNPMIHKSPTHGEASSSSAIRYRDWESGL VLPSLEDHEQERLCGLPDIGGHVMKIPLVAFQVLLCMRLEGTPPSARNIPIFALFSPLFI LQGAGAFFSLARLVEKVVLLLRNGPVSPNYLTVSSKVRDCFAFLHHGSRLLGWWSIDEGS KEEQARLFYTESTGYNTFCGYPPEVVRKMPKKDLAEEVWRLQAALGEQSEITKCTKQEYE RLQNEKVLCRVCYEGEICMVLLPCRHRTLCKYDSVFFVLFIYALPS

Transcript Sequence

Transcript ID	Zm00001d013466_T009
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:12268699:12273312:1 gene:Zm00001d013466 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ring hc protein1 description:Transmembrane Fragile-X-F-associated protein
Sequence	AACACATTGCTATAAAATATTGAGTCCGTCTAACTGAACAACAAGCTTTTGTCAGAAGCC TAGGGTTTATTTTCTCGTACATGTTTGGATTGCTCTTTGGCTTGTTCAACCATATCTTTC GGTCGAACAAGATGTCTGCTGAGTGGAGAAGTATGTTGGTACCGATCTACAAGAATAAGG GGGATATTCAAAGCTGCATAAATTACCGGGAAATTAAGTTGATGAGCCATATTATGAAGC TATGAGAGAGATATTGTACATCGTTTGAGAGAAGAATAACGAGGATCTCTGAACTAATTT GGTTTCATGCCTGTTAGGTCAACCATGGAAGCTATTTTGTTAATAATACAAGTGATGGAG TAGTATAGAGAGCAGAAGAAGGACCTAAACATGATTTTCATTGACTCATGGAAGACTTAT AATAAAATACCAAGGAATGTTATGTTGTGGGCTTTCGACAAACATAAAGTTCCTATGAAG TACGTTGGACTCATTAAGGACATGTACAACAATGTTGTGATTAGTTTTCCAACAAGTGAT AGAGACACATATGAGTTCTTGATTAGAATAGGACTACATTAAGGGTCAACTTTGAGCTCT TACCTTTTTGCCTTGGTGATGGATGTAGCTCGCAAGGGATATGCCTTGGTGTATGTTTCT TTTTGTGAATGGTATAGTGCTAGTTGACGAAAGTCAGGCGAGAGTAAATAGGAAACTGGA GTTGTGGCGGGAGACTTAGTCCAAAGGTGTTTGACTCAGTAGAACTACAACCGAATATGT GACTTCATCGCTACTACACATGAGGAAGGAGATATTAGTTTGGAAGGTCAAAGTAGTGCT CAGGCTTTCAGTATTTGGGATTAATGCTATAGAGATATGAGGATATTGATGAAGATGCTA GCCATAGCATCAAAGTAGGGTGAATGAAGTGGCGTCAAGCATCTTACTCTCTATTTGATA AGCGGGTACCACTGAAGCTAAAAAGTAACTTTTATAGGACGTTGATTAGACCTGCTATCA ATGTTTTCAAGTCAGACGACTTGTTGGTCGTTTTGGCTAACCGACTTGGGCGATTAATCG CGATTAGTCGGACGACTTGGCGATTAATCGCTATTTTTTCCGAACCGACTTAGAGGATTA ATCGCGACTAATCGGACGACTTGAAAACATGCTGCTATATCGTAAGATGTAGAATGCTGG CCCTACAAAAAGGCAACATGTTCATTAGATAAGTGTTGTGGAAATATGCATGTTGCGTTG GAGTATGGCCATAGAAGAAGGGATTACGTTCAAAACGATGATATATAGAATAGGCTAGGG GTAGAGCACCATTTGAAGAAAATCTTATCTGACACCAGTTGAGATGGTCAGAGGCACCAG TGCGTAGTGGAATTCTAAGGCACGATAGTAATGGAAAGAGAGGCAAGTGAAACCAAAGTT GACATGGGGAGAGACAGTAAAAGAAGACTTGAAAGGATATAATATATCCGAAGATTTAGT CTTGAATAAGAGTGCATGGAAAACGTCCATCCATGTGCTTAGTCTTGACTTATGGCTTAT GTTGCGTTTCAACTAGCCTACCCCAAATTGCTTGAGACTAAAAGAGCTTGTTGTTGTTTG GATTGCTCTTTGATGATTTGCCAGTTACAATTTTACTTTTTTTTTGCATTTCATACAAAT GTTTAATCAATAATCAATATAAAACATCACTTCTACCCCTCTTAATCAGAAGCATTAAGT TTTTTCACCCTTTTGATCTTTTGTGTAGATCTTACTAGCAGCTGGGATGATCAAGATTCC AGAGAATGTATCATTTTTAACTAGAATGGAATATTAGACATTTACCTTATTACGTTTAAT CTTTTTGAACCAGCATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAAC ATTCACCCTTCTCAAGCTGTCTGGTAAGTTTTGTTGGTTGCCTTCCAAATGTTACTTACA AAACTGAATTTATACTTTAGACCTCTTTATTCTATCTTCTTAATTTATAAAGGGGTGCAG TTCTCCTGCGCGTTTTCGAGAAAAACGTTACTTACAAAACTGATCTCCTCACTTAGGGTT CCTTAATTTAAATCTTTAGAATTTGTTGCATTATTTCTTCTTGACTAGAATGACTAATTA TTACAACTTGTTTCTTCTTCATTATAGTATTTGAAATCAGAAGAGACCTCTCATTTAGTG CTTGTGAAAGCAGTTGAACTAGCTACTGTTTTAAGTTTCACAATGTCAAGTCTCTCTCTT TCTCTCTCCCAGGTCTTTTTTTGCTTTTATTGTGCAATGTTTTTGTAATAATGCATAGTT GCACATGGCAGGTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGGAT TGCAGAATGCTTTGCATTTCTTGTCTGTACAAGATGGTTTAATCCCATGATTCACAAGTC TCCCACTCATGGGGAGGCTAGCTCATCATCAGCGATTAGATACCGTGATTGGGAAAGTGG TCTTGTCCTCCCATCACTAGAAGATCATGAACAAGAGAGGCTTTGTGGTCTACCTGATAT TGGGGGTCATGTAATGAAAATACCTCTTGTGGCTTTCCAAGTATTGCTTTGTATGCGGTT GGAGGGTACACCACCAAGTGCTCGCAACATTCCAATATTTGCTCTTTTCTCGCCACTATT TATTCTGCAAGGTGCTGGTGCCTTTTTCTCTCTAGCAAGATTAGTGGAGAAGGTTGTTCT GCTATTGCGCAATGGACCAGTTAGTCCTAATTACCTTACAGTCTCATCAAAAGTTCGTGA TTGCTTTGCTTTTCTTCATCATGGTTCAAGGCTTCTTGGTTGGTGGTCTATTGATGAAGG GAGCAAGGAGGAACAAGCCCGGTTGTTCTATACTGAATCTACTGGGTACAATACATTTTG TGGCTATCCACCAGAAGTGGTTAGGAAAATGCCTAAAAAGGACCTTGCAGAAGAGGTTTG GAGGCTGCAGGCAGCGTTGGGAGAACAATCTGAAATCACCAAGTGTACCAAACAGGAATA TGAAAGGCTTCAAAATGAGAAGGTTCTTTGTAGGGTTTGCTACGAGGGAGAGATATGCAT GGTGCTTCTTCCCTGCCGGCACAGAACTTTATGCAAGTATGATTCAGTCTTTTTTGTTCT TTTCATATATGCCCTTCCTAGCTAGTTAGGCAATGCTTGAAATTGTTACTACATTGTTTC TGACGGTACATTTTCTTTATTAGATCTTGTGCTGAGAAATGCAAGAAGTGTCCTATCTGC CGTGTCCCAATTGAAGAACGCATGCCTGTATATGATGTTTAAACCTCACTAACTCAGCTT AACATTCAAATTTGTACATATGGGTTCTGTCATGCTGTGCATTTAGTCTCGATCACAACT TTAAGCTGATTGAGGTGTGCGTTTCAGAAAAAAAGTCTACAATATGTGTATATCATGCCA TGTCTAACCAAAAGCATGGAAAGGTGGCTGATGAGCATTTTGCCATTTCGGTCCAGTTAT CTAC