Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013444_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:5:11738280:11748340:-1 gene:Zm00001d013444 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CASP
Sequence

ATGGAGCCCTCGCCGGCGCAAGCGGGCGCGTCGGACCGCGACCGCTCGCCGCCTCCGCCC
CCGCCACCGCCGTCCCAGTCGTCTACCGCAGCGACGATCTCATCGCCGCTTGCCGTCGTC
TGCAGTTTCTGGAAAGATTTTGATTTGGAGAAGGAAAGAAGTGGATTGGATGAGCAAGGT
TTAAAGATTGCGGAGAATCAAGAAACTAGTCAAAAGAACAGGCGTAAGCTTGCTGAGAAC
ACACGGGATTTCAAAAAGGCATCATCAGATGAGAAACTCAGTTTACTCAATTCTTTGCTG
AAGAGTTATCAAGAGGAAGTTGATAACCTCACAAAGAGAGCAAAGTTTGGAGAAAATGCA
TTTCTCAACATCTATCAGAAGCTCTATGAAGCTCCTGATCCATATCCAGCTCTTGCTTCA
ATGACTGATCAAGACCAGAAATTGTCTGAACTGGAGACTGAGAACCGTAAGATGAAACTA
GAGCTTGAAGAATACCGTGCTGAAGCTGCACACTTGAAGAACCAGCAGGCAACAATTAGG
CGACTTGAAGAGCGTAATCGCCAACTGGAACAGCAGATGGAGGAGAAAGTAAGGGAGATG
GTTGAAATGAAGCAGCGAAGCATGGCTGAGGATAGTCAGAAAACTCTAGAAGCCCTGAAA
GATAGGGAACGGTCATTGCAGGACCAACTAAGGCAAGCTACAGAAAGTGTAAAGAATATG
CAAAAGCTACATGAATCGGCGCAAAGCCAATTGTTTGAGCTTCGCACTCAATCAGAGGAG
GATCGAGCTGCAAAGGAGGTTGAAGTCAGCCTTCTGATGGATGAAGTTGAAAGGGCTCAA
GCACGATTAGTCAGTCTTGAGAGGGAAAAGGGGGATCTGCGTTCACAATTGCAGACAACT
AATGAGGATGCAAGCAAAAGTAGTGACTATTTGGAATCAAGTGATATACTTGAGAGTTCC
TTGAACGCCAAGGAGAAGATTATTTCGGAGTTGAATGCAGAACTTCGCAACATTGAAAGT
ACTTTATCAAGTGAGAGAGAAATGCATGTGAACGAGCTTAAGAAGTTGACTACTTTACTC
ACTGAACAGGAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAA
AAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGGCTGTTGGTTACAACTCC
ATTGAAGCTGAAGACTGGGAGCTTGCTACTAATGGTGAAGAAATGAGCAAGTTGGAAGCA
TTGCTTCTAGACAAGAACCGTAAAATGGAGCATGAGCTAACACAACTGAAGGTTAAAATA
TCAGAGAAAACAAGTGTTCTTGAGGAAGCTGAAAAAAGGATTGTTGAACTAACTTCAAAG
GTTGAAGAGCAGCAAAAGCTGATTTTGAAACTTGAGGATGACATACTAAAGGGCTACAGT
TCAACTGATAGGAGGGGCTCACTCTTGAATGACTGGGATATTCAAGAAATCGGCTCAAGT
GAAGCATCTGAGGTAATTTCTAGTTTAGTTTTGCTAATCACTGTTGGAATAGCCCCACAT
TATGAGTTGTGGGTGGGCAATCATGGTTTATATGGATGA

Peptide Sequence

PEP ID

Zm00001d013444_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:5:11738280:11748340:-1 gene:Zm00001d013444 transcript:Zm00001d013444_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CASP
Sequence

MEPSPAQAGASDRDRSPPPPPPPPSQSSTAATISSPLAVVCSFWKDFDLEKERSGLDEQG
LKIAENQETSQKNRRKLAENTRDFKKASSDEKLSLLNSLLKSYQEEVDNLTKRAKFGENA
FLNIYQKLYEAPDPYPALASMTDQDQKLSELETENRKMKLELEEYRAEAAHLKNQQATIR
RLEERNRQLEQQMEEKVREMVEMKQRSMAEDSQKTLEALKDRERSLQDQLRQATESVKNM
QKLHESAQSQLFELRTQSEEDRAAKEVEVSLLMDEVERAQARLVSLEREKGDLRSQLQTT
NEDASKSSDYLESSDILESSLNAKEKIISELNAELRNIESTLSSEREMHVNELKKLTTLL
TEQESALMELKKELQERPTQKLVDDLKKKVQILQAVGYNSIEAEDWELATNGEEMSKLEA
LLLDKNRKMEHELTQLKVKISEKTSVLEEAEKRIVELTSKVEEQQKLILKLEDDILKGYS
STDRRGSLLNDWDIQEIGSSEASEVISSLVLLITVGIAPHYELWVGNHGLYG

Transcript Sequence

Transcript ID

Zm00001d013444_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:11738280:11748340:-1 gene:Zm00001d013444 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein CASP
Sequence

GTCGCCGTCCGTCCCACCACCGGATCCCGCCCACCCGCCAGATCCAGGTGTCCAGATCCC
CGAAGGGCGAAGGCCTGAACCCCTGCGCATATCCCCATGGAGCCCTCGCCGGCGCAAGCG
GGCGCGTCGGACCGCGACCGCTCGCCGCCTCCGCCCCCGCCACCGCCGTCCCAGTCGTCT
ACCGCAGCGACGATCTCATCGCCGCTTGCCGTCGTCTGCAGTTTCTGGAAAGATTTTGAT
TTGGAGAAGGAAAGAAGTGGATTGGATGAGCAAGGTTTAAAGATTGCGGAGAATCAAGAA
ACTAGTCAAAAGAACAGGCGTAAGCTTGCTGAGAACACACGGGATTTCAAAAAGGCATCA
TCAGATGAGAAACTCAGTTTACTCAATTCTTTGCTGAAGAGTTATCAAGAGGAAGTTGAT
AACCTCACAAAGAGAGCAAAGTTTGGAGAAAATGCATTTCTCAACATCTATCAGAAGCTC
TATGAAGCTCCTGATCCATATCCAGCTCTTGCTTCAATGACTGATCAAGACCAGAAATTG
TCTGAACTGGAGACTGAGAACCGTAAGATGAAACTAGAGCTTGAAGAATACCGTGCTGAA
GCTGCACACTTGAAGAACCAGCAGGCAACAATTAGGCGACTTGAAGAGCGTAATCGCCAA
CTGGAACAGCAGATGGAGGAGAAAGTAAGGGAGATGGTTGAAATGAAGCAGCGAAGCATG
GCTGAGGATAGTCAGAAAACTCTAGAAGCCCTGAAAGATAGGGAACGGTCATTGCAGGAC
CAACTAAGGCAAGCTACAGAAAGTGTAAAGAATATGCAAAAGCTACATGAATCGGCGCAA
AGCCAATTGTTTGAGCTTCGCACTCAATCAGAGGAGGATCGAGCTGCAAAGGAGGTTGAA
GTCAGCCTTCTGATGGATGAAGTTGAAAGGGCTCAAGCACGATTAGTCAGTCTTGAGAGG
GAAAAGGGGGATCTGCGTTCACAATTGCAGACAACTAATGAGGATGCAAGCAAAAGTAGT
GACTATTTGGAATCAAGTGATATACTTGAGAGTTCCTTGAACGCCAAGGAGAAGATTATT
TCGGAGTTGAATGCAGAACTTCGCAACATTGAAAGTACTTTATCAAGTGAGAGAGAAATG
CATGTGAACGAGCTTAAGAAGTTGACTACTTTACTCACTGAACAGGAAAGTGCTCTTATG
GAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAAAAACTGGTAGATGATCTCAAGAAA
AAGGTTCAGATTTTGCAGGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTT
GCTACTAATGGTGAAGAAATGAGCAAGTTGGAAGCATTGCTTCTAGACAAGAACCGTAAA
ATGGAGCATGAGCTAACACAACTGAAGGTTAAAATATCAGAGAAAACAAGTGTTCTTGAG
GAAGCTGAAAAAAGGATTGTTGAACTAACTTCAAAGGTTGAAGAGCAGCAAAAGCTGATT
TTGAAACTTGAGGATGACATACTAAAGGGCTACAGTTCAACTGATAGGAGGGGCTCACTC
TTGAATGACTGGGATATTCAAGAAATCGGCTCAAGTGAAGCATCTGAGGTAATTTCTAGT
TTAGTTTTGCTAATCACTGTTGGAATAGCCCCACATTATGAGTTGTGGGTGGGCAATCAT
GGTTTATATGGATGAAGGCGACTTAAAGGGCTAGCTTTTTAGGGAGGGGGAGTGTTGGTC
CAATAGACCTATAGCTCGTTGATGTGCGTTCAGGTGCGGGTGTCATGGCCCAATGGCCTG
GGTGTGTGTGCGGGTGCGCCGTGTATCGGCGGTCCGGTTCCAACAATTGGTCAATCTCCC
CTTCAAACATTGTGAGCCAAGTTTTGTCTGCGAATGCACTGGGCCGACCTGAGCTCTGAT
ACCCATTGTTGACCCAGTTCACTCTCTCACACAACACTCTTGCAATTGGCTCAAGGAGAA
GATAAGAAGAGAAGAGGATGAAACAGCACAAGCAAGCAGCCCTTGCTAGCTTCTTGGTGG
ACAAAAGAATTCTCACAACAGCACACACTTGTTCACGGCGGCACTGCACGCCAGTACCCA
CACAGGACACGCTGCTCACGCACAGCACTTGTGCAGTACACACTATTACTCTGCGAACAA
ACACTGCACACTTTGGATAAAGAAGTAATGACATGCTTAAGCGCTAAGTATGCGGCCATT
ATTGCCCATACACACGCTAAGACGCACGTACTCCTGCATGCAAGCACATAATCTCCAGGC
TTGATGGGATTCCACCGGATGACCACCGCATCTCAGACTAGATAGGCAAACACCTGCTTG
GCCCTAAAGACTAGCACCACCAACGAACACCTGACAACCCAGCCACGTCTAGCGCTCTGC
CTGCAGCTCCACAACTCCTCCACGCACACCACGGAGTCTCCTCTGCACCGTGCATGATCT
GCACTTGCACACAAATAACACGTCCACTTGGTGTACTGGCTTGCCACACAACTTGGCAGC
TCGGCCAGCCACTCGACAACATTTGCAGCACAACTCAGAGTAGCACTTCACTAACACACA
CACACTTAATCAACAAAAACTAACTAGTCAAGAACTCAAGATTAAGTCTAACAATCACAC
CCTATCTTGCTGTTGTTTGCAATAACTTTTGTTTATTTTAAGATATGCTGTGAAGTTTGT
TCTAGAATACTTGTATTTACAATCGTTTTCTGTATTAATGGTTGTACTTACCTTTGGTTC
TTTACTAACAGCTCCATTGCCAGCATAAATAACAGCTCCAATGTTCTGATTTTGTAGACA
TGCTAGCTCTGTTCTTAAGGCGTCGCATAGGCGACGCCTAGGCGTCCGGGCAGTGGTCTA
ACGCCTAGGCGCCTTGCCTGCCTACCTCGCCTAGGCATCGTCTAGGCATCCAGGCGGTGC
TCCAACGCCTTGGACCGCCTTACCGCTTTAAAAACCATGCATGCTAGTGAAATATTTGGT
AATATATGCAGATATCTGTGTCCAGAATTCACCATTCTAGACATTAATTTATGCAAATAT
GCTAATTTGCCAAGAATTTTGCTTATATTGTGCTTGCTGTACATGTACTTTTGGCAGTAT
AGTTGGCTATAAATGTATGTACTTGCTTCGAGTTTTCATCTATCTACCATTATGGTTTCA
TTCTTAAAAAAAACTCGGTGGTAGGGGAAATACCGCCTTCACGGTATTATATTAAGAAGA
AGTTCAATTGGAGCCCCGACTGATAAAGGTCAGAAAAGCTGGCCTCCCGTGCAGCATGAG
GGTCCGCCCCCTACAGGCCAAATATTTACTCGTGCTTTGAGCCCTCCCAATCCTACACGA
GGATCCGCCCCCATAGGCTAGTCCATCTCGTGTGCACACAACCAGGGGAACTGGTGAATG
ACATTTTTTAACCTCACCTGAAATTCGCTCCCACTGGGATTCGAACTCAGGACTTGAGGA
GTGCTACTCGGACCACCTGACTTTAGTAATAATCTATCTTTGTGTAAAACTCATCCCACC
TCCCTTTTTATTTATTTTATTTCTAATTACTAGTTTATGGTTTCATTCTTAGAAACTAGG
AACATGGAACTTGGCCACGTTCCTCGTTCCAAGAACATTCGTTCTCGTTTGTGTTAAAAC
CTAGATTTAGTAATGTACCACGTTCCCGTTTCTCAATCCCATCGATCCTGGAACGTAGTT
ACTAAGGTTATTATAATCTGACTCTATTTACCCTCTGTGTGTAGTGGGATGCCCACTTTT
CTCAGATTCACTTGTGTCTTTTATTTGCAGGGCTCTGATCCAAGGCATGCATCGGCAGAT
CAAGATCAAAGTTCGATGCTCAAGGTCATTTGCAACCAGAGGGATCGTTTCCGTGCACGT
CTGCGTGAAACTGAGGAGGAACTGAGGAGACTAAAAGAGAAGCATGAGATGCTGACTGTT
GAACTGGAAAAAACTAAAGCTGATAATGTGCAACTGTATGGAAAGATTCGATATGTCCAA
GACTATAGCCACGACAAGATTGTTTCCAGGGGACCAAAAAAGTACGCAGAAGATATTGAA
AGTGGTTCTTCTGATGTTGAAGCAAAGTACAAGAAAATGTATGAGGATGACATAAACCCG
TTTGCTGCTTTTTCAAAGAAGGAAAAGGATCAGCGTTATAAGGAACTTGGTTTAAGAGAC
AAAATCACACTTAGTAGTGGCCGTTTTGTCCTTGGTAACAAGTATGATACTATCTTTGTG
TAAAAATCATCCCACCTACCTTTTTATTTATTTATTTCTAATGATACTGTTTGATAATAA
CTGGTAGATTATTGTAGAAAAATCAAGTTAGACATGTCTTTGTATGCCCATTTGTTTTTT
ATACTAGAAACTGGAATTGATTACTATGACTCTACCTTTTTGAAATCATGCTGTACTCAT
CACAGGGATGCTTAAATTTCCATACATGGTCAATATGCAATGTCCAGATCTGTTATTATT
ATTTTTTGCTTCATTGCATGCGAAACTCGTTCCAAGTTGAACCATATATATAAATCTTTC
ATGATACATAATCATATATGTTTATTCTGCATGGGGCCATAATTTCTTTATTTTTGTCAT
GGAGTGGGGAATAGAACATGGTATTAACATTGCCATCTATTTATTTCCACTCAGATACGC
ACGGACGTTTATATTCTTCTACAGCATCGGATTGCATCTCCTTGTATTTACATTACTGTA
CAGAATGTCAGCTTTGAGCTATCTCAACACAACAACTCAGCAGGATGAAATCATTCTGGA
TGCTGGTAATCAGAGGCTAACGCACATGCTTTAGGCCAAGTTCCATATAACAGTAGAAAA
AGAGGCTCTCTGGGTTTTGATCTATAGAATCTTTGGACAGGATCGTTGCTGAGATTGCTA
TTGATTTGTTTGCTTTGTACCCTTAAGCGCCTTGATATGTTTCTGTAGATAAAAAGAAAA
AAAAACCTGTTTTGGGGGCAGGCGTGGGTGCGGCATGAGCTTTGAACTATGTAATACTGT
TGTACTGCCAATTTACCATTTTGTTGGTAAATGAAAGCACACTTG