Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013441_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:11413528:11418401:-1 gene:Zm00001d013441 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit alpha-1
Sequence

ATGCTGACCAAGTTCGAGACGAAGAGCAACCGGGTGAAGGGGCTGAGTTTCCACCCGCGT
CGGCCATGGATCCTGGCGAGTCTCCACAGCGGGGTGATCCAGATGTGGGACTACCGCATG
GGCACCCTCCTCGACCGCTTCGACGAGCACGACGGGCCGGTTCGCGGCGTCCACTTCCAC
GCCACTCAGCCTCTCTTCGTCTCCGGAGGTGATGATTATAAGATTAAGGTCTGGAATTAC
AAGACGCACCGCTGCCTCTTCACACTTCATGGGCATCTTGACTACATTCGCACCGTGCAA
TTCCATCATGAGTACCCATGGATTGTAAGTGCTAGTGACGATCAGACAATCCGGATCTGG
AACTGGCAGTCACGCACCTGTGTGGCTGTGCTGACTGGGCATAACCATTATGTCATGTGT
GCATCTTTCCATCCCAAAGAAGACCTAGTTGTATCGGCATCACTTGATCAGACTGTGCGT
GTTTGGGATATTGGAGCTCTAAGGAAGAAGACAGTGTCACCTGCGGATGACATCCTCCGT
CTCACCCAGATGAACACAGATCTTTTTGGAGGTGTTGATGCTGTAGTGAAATATGTCCTC
GAAGGCCATGACCGTGGGGTCAACTGGGCCTCGTTTCATCCCACTTTGCCGCTCATTGTT
TCTGGGGCAGATGACCGGCAGGTGAAGCTATGGAGAATGAACGATACCAAGGCTTGGGAA
GTTGATACTTTAAGGGGTCACGTGAATAATGTGTCCTGTGTGATGTTCCATGCGAAGCAA
GACATCATTGTGTCTAACTCAGAAGACAAAAGCATTCGCATTTGGGATGCCACAAAGAGA
ACTGGTATCCAGACATTTAGACGGGAGCACGACCGTTTCTGGATTCTTGCTGCTCACCCT
GAAATGAACCTTCTTGCTGCTGGCCATGACAGTGGCATGATTGTGTTCAAATTGGAGAGG
GAACGCCCGGCCTTCTGCGTTAGTGGTGACACTGTTTTCTATGTGAAAGATCGATTTCTC
CGTTTCTTTGAGTACTCCACCCAGAAGGAAGTTCAAGTGGCTCCAATAAGAAGACCTGGA
TCGGTCAGCTTGAACCAGTCACCCAGGATGCTGTCCTACAGCCCAACCGAGAATGCTGTC
TTGATTTGCTCTGATGCTGACGGGGGTTCATATGAACTCTACATTGTTCCCAAGGATTCT
GCTGGCAGGTCTGATTACTTACAAGAGGCAAAGAAAGGGGCGGGTAGTTCTGCTGTTTTT
GTAGCGCGTAACAGGTTTGCAGTCCTTGAGAAGAGTAGCAATCAAGTTTTGGTGAAGAAT
CTTAAGAATGAAATTGTGAAGAAAAGCCCCCTTCCCATTGCGACTGATGCAATATATTAT
GCTGGGACCGGTAACCTGCTTTGCAAAGCTGAAGATCGGGTGGCCATCTTTGATCTTCAG
CAAAGGTTAGTTCTTGGTGAGCTTCAGACACCTGCTATCAAATACGTTGTTTGGTCCAGT
GATATGGAATCCGTTGCACTGCTGAGCAAGCATGCAGTGGTTATAGCTACCAAGAAGCTT
GTCCATAGGTGCACACTACATGAAACCATCCGTGTGAAAAGTGGTGCCTGGGATGAGAAT
GGTGTGTTCATTTACACTACACTGAACCATATGAAGTACTGTCTTCCCAATGGAGACAGT
GGGATCATAAAAACCATTGATGTTCCTATTTACATAACGAGGGTTGTTGGGAACAATATT
TTCTGCTTAGATCGTGATGGGAAGAACAAGCTGGTTGCAGTTGATGCATCGGAGTACATT
TTCAAGCTTGCCCTTCTCCGAAAGCGCTATGACCATGTTATGAGTATGATTAAGAACTCC
CAGTTGTGTGGGCAAGCTGTGATTTCTTATTTACAACAGAAAGGTTTCCCAGAAGTTGCT
CTACACTTTGTGAAGGATGAGAAGACCAGATTTAACTTAGCTCTTGAGAGTGGAAACATT
CAAATTGCAGTTGCTTCTGCGAAGGAGATTGATGACAAGGATCACTGGTACAAGTTGGGA
ATTGAGGCCCTGAGGCAGGGAAATGTTGGTATAGTGGAATATGCTTACCAACGAACAAAG
AATTTTGAGAGGCTTGCTTTTCTGTATCTTATTACCGGTTACTTGGACAAGGTGGGCTTC
ATGTGCAAAATTGCTGGACAGAACAACAATTTGATGGGACAGTTCCACAATGCGTTGTAT
CTTGGGGATGCCAAGAAGCAGAAGTTGATGAGGTGA

Peptide Sequence

PEP ID

Zm00001d013441_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:11413528:11418401:-1 gene:Zm00001d013441 transcript:Zm00001d013441_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit alpha-1
Sequence

MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHVNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFCVSGDTVFYVKDRFLRFFEYSTQKEVQVAPIRRPG
SVSLNQSPRMLSYSPTENAVLICSDADGGSYELYIVPKDSAGRSDYLQEAKKGAGSSAVF
VARNRFAVLEKSSNQVLVKNLKNEIVKKSPLPIATDAIYYAGTGNLLCKAEDRVAIFDLQ
QRLVLGELQTPAIKYVVWSSDMESVALLSKHAVVIATKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHMKYCLPNGDSGIIKTIDVPIYITRVVGNNIFCLDRDGKNKLVAVDASEYI
FKLALLRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKEIDDKDHWYKLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYLDKVGF
MCKIAGQNNNLMGQFHNALYLGDAKKQKLMR

Transcript Sequence

Transcript ID

Zm00001d013441_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:11413528:11418401:-1 gene:Zm00001d013441 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit alpha-1
Sequence

GCGCGGGGGTCCCGAGTCCCGACTCGCCCCTCCAGATCCACCACCACCACCTCTTCTCCT
CCAGATCCACCACCCCATCCTCTCCGCAGCTACAGCCAGGTGGAGCTCGGCTTAGCCGTC
GACGTGGCTGGGCACGCCGGGACGGGAGGATGCTGACCAAGTTCGAGACGAAGAGCAACC
GGGTGAAGGGGCTGAGTTTCCACCCGCGTCGGCCATGGATCCTGGCGAGTCTCCACAGCG
GGGTGATCCAGATGTGGGACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACG
ACGGGCCGGTTCGCGGCGTCCACTTCCACGCCACTCAGCCTCTCTTCGTCTCCGGAGGTG
ATGATTATAAGATTAAGGTCTGGAATTACAAGACGCACCGCTGCCTCTTCACACTTCATG
GGCATCTTGACTACATTCGCACCGTGCAATTCCATCATGAGTACCCATGGATTGTAAGTG
CTAGTGACGATCAGACAATCCGGATCTGGAACTGGCAGTCACGCACCTGTGTGGCTGTGC
TGACTGGGCATAACCATTATGTCATGTGTGCATCTTTCCATCCCAAAGAAGACCTAGTTG
TATCGGCATCACTTGATCAGACTGTGCGTGTTTGGGATATTGGAGCTCTAAGGAAGAAGA
CAGTGTCACCTGCGGATGACATCCTCCGTCTCACCCAGATGAACACAGATCTTTTTGGAG
GTGTTGATGCTGTAGTGAAATATGTCCTCGAAGGCCATGACCGTGGGGTCAACTGGGCCT
CGTTTCATCCCACTTTGCCGCTCATTGTTTCTGGGGCAGATGACCGGCAGGTGAAGCTAT
GGAGAATGAACGATACCAAGGCTTGGGAAGTTGATACTTTAAGGGGTCACGTGAATAATG
TGTCCTGTGTGATGTTCCATGCGAAGCAAGACATCATTGTGTCTAACTCAGAAGACAAAA
GCATTCGCATTTGGGATGCCACAAAGAGAACTGGTATCCAGACATTTAGACGGGAGCACG
ACCGTTTCTGGATTCTTGCTGCTCACCCTGAAATGAACCTTCTTGCTGCTGGCCATGACA
GTGGCATGATTGTGTTCAAATTGGAGAGGGAACGCCCGGCCTTCTGCGTTAGTGGTGACA
CTGTTTTCTATGTGAAAGATCGATTTCTCCGTTTCTTTGAGTACTCCACCCAGAAGGAAG
TTCAAGTGGCTCCAATAAGAAGACCTGGATCGGTCAGCTTGAACCAGTCACCCAGGATGC
TGTCCTACAGCCCAACCGAGAATGCTGTCTTGATTTGCTCTGATGCTGACGGGGGTTCAT
ATGAACTCTACATTGTTCCCAAGGATTCTGCTGGCAGGTCTGATTACTTACAAGAGGCAA
AGAAAGGGGCGGGTAGTTCTGCTGTTTTTGTAGCGCGTAACAGGTTTGCAGTCCTTGAGA
AGAGTAGCAATCAAGTTTTGGTGAAGAATCTTAAGAATGAAATTGTGAAGAAAAGCCCCC
TTCCCATTGCGACTGATGCAATATATTATGCTGGGACCGGTAACCTGCTTTGCAAAGCTG
AAGATCGGGTGGCCATCTTTGATCTTCAGCAAAGGTTAGTTCTTGGTGAGCTTCAGACAC
CTGCTATCAAATACGTTGTTTGGTCCAGTGATATGGAATCCGTTGCACTGCTGAGCAAGC
ATGCAGTGGTTATAGCTACCAAGAAGCTTGTCCATAGGTGCACACTACATGAAACCATCC
GTGTGAAAAGTGGTGCCTGGGATGAGAATGGTGTGTTCATTTACACTACACTGAACCATA
TGAAGTACTGTCTTCCCAATGGAGACAGTGGGATCATAAAAACCATTGATGTTCCTATTT
ACATAACGAGGGTTGTTGGGAACAATATTTTCTGCTTAGATCGTGATGGGAAGAACAAGC
TGGTTGCAGTTGATGCATCGGAGTACATTTTCAAGCTTGCCCTTCTCCGAAAGCGCTATG
ACCATGTTATGAGTATGATTAAGAACTCCCAGTTGTGTGGGCAAGCTGTGATTTCTTATT
TACAACAGAAAGGTTTCCCAGAAGTTGCTCTACACTTTGTGAAGGATGAGAAGACCAGAT
TTAACTTAGCTCTTGAGAGTGGAAACATTCAAATTGCAGTTGCTTCTGCGAAGGAGATTG
ATGACAAGGATCACTGGTACAAGTTGGGAATTGAGGCCCTGAGGCAGGGAAATGTTGGTA
TAGTGGAATATGCTTACCAACGAACAAAGAATTTTGAGAGGCTTGCTTTTCTGTATCTTA
TTACCGGTTACTTGGACAAGGTGGGCTTCATGTGCAAAATTGCTGGACAGAACAACAATT
TGATGGGACAGTTCCACAATGCGTTGTATCTTGGGGATGCCAAGAAGCAGAAGTTGATGA
GGTGAAGGAGTTAATCGAGATAGTGAGGGAGTATGTCCTTGGTCTGAGGATGGAACTCAA
GAGAAAGGAACTGAGGGATGATGTGACCCGTCAACAGGAGTTGGCTGCTTACTTCACAAA
CTGCAAGCTTCAGAGAGTTCATATGAGGCTTGTGCTCGCTAGTGCCATGGCTCTTTGCTT
CAAGCAGAAAAACTATGCAACTGCGGCACACTTTGCTAGGATGCTTCTTGAGAACAGCCC
TCAGGAGGCCCAAGCAAAGAAGGCCCGACAGGTGCTGCAAGCTTGCCATGACAAGGACGA
TTCCCACCAACTGAACTATGACTTCAGAAATCCATTCGTTGTTTGTGGCGCTACGTATGT
TCCTATCTATCGTGGCCAAAAGGATGTTTCGTGCCCATACTGTGGATCCCGATTTGTTCC
TTCCATCGAAGGACAGCTTTGTACCATATGCGAGCTTGCTGCGGTTGGGGCAGATGCATC
AGGCCTCCTCTGCTCTCCTACACAGTCGAGATAAGCGATGGTAGTTAGAGGTCCCCTATA
TTCTTTCTAGCGTCTCAAGTTCCAAGATTTCATCATATATATGTTACCAGAGAGTTTACT
GA