Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013416_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:10762331:10765607:1 gene:Zm00001d013416 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 11 description:PHD finger protein MALE MEIOCYTE DEATH 1
Sequence	ATGCCGTCCAGGCGCGCGCTACGGCGGTCTCCGCCGCCACGACAGAGCCCGCAGGCAGCG GCGGACGCGAAGGAGGCGGCGAGCCCGTGGCTACCGTCCTCATCCTCCACCTCGTCGTCT TCCTCCTCAGCCTCCGCGCTCGTCAGGCGCTCCGCCGCCTTCTCGGCGGCTGGGCCGAGG GGCGGATCGGGGACGCGCGTGTACCCGTTGCGGGACTTCCCGGGCGGGGACGCGGCCGCG CTCGGCGGTGCGTTCCGGGACAACGTGCGGTGGCTCCTGAAGCAGTGGAGCTGCGTTCCG GGTTCCGTGTCGGCGTGGCGCGCGCTGCTGTCAGACGAGCGGACGGGCGCCTTAGTCCCC GTCATCGCCGTGGAGGAGCTCGCGGCATCGTCGCCCTTGCCGCTCTGCGATCTCTGTCGC TGCGCCGGTTGGAGCCACCACTGGGTGTCAAAGCGGAAGTACCATTTCATCATTCCGGCA GTGGTCGACTGGGACCAGCCATTCAGGGCTGATGGGTTACTTGGGCACAGCGAGCACCTC CTACATGGTCTGATCCATAGTAATGGCTTTGGTCACCTTCTCACCCTCCGTGGTCGTGTT GGTGGCTCCACTTTCCTCTCTGGCTGCCAGATCATGGATATATGGGATCAACTTTGCACA GCTCTCCGTGTAAGAGCCGTCTCTGTTGTGGACTTGACCCAGAAGTACTCTGTGGACCTC CGCCTCCTGCTTGGAGTGGCACAAAGCAAGACTTGGTTCACTCGCTGGGGGTACTGCCTT GCCAAGGGTTGTTTCAGCGTGTCTAGGTCCACTTATACTGCTGCACTTGAAGCCCTTGCT GCCCTGCCTGTTGATTGTCTCCGTAGTCGTCATGTCCGTCGTGTGGTCACCATCTACCGC CGCCTCTCCAGCAAACCTCTGGTTACAGTCCGCGAGTTTCTCCTCTGCCTGCTTGATTGG AAGCACCGTGAGCCCCCGCTTTCTCCTCCTCCCGTGAAGGCATCCTCGCGGCTGATGTTC TTGCTGCCAAAGTCATGTATGATGAAGAGGCCCAGGCAGCCATGTCAACGCTTTGAGGAC GTAGTTGACCTGCTTGAGTGTCGGTGGTCAAAGAAGCGTCTGCTTAGTGCTGCAAATGTT GTTGTTGCAAAGCTGCGAGAGCATGCGGATGGCACAAAGATAACACGGCAAGCAGTGCGA GATGCTGCAAGGGGTGGCATCGGTGACACTGGTCTCCTGGACTTCGTCATCAAGTCCCTC AATAACACTGTTGTTGGTAACCACATTGTGCGCCGCGTGCCTGACCCTGAGAATCGTGTG CTTCACTTCAGCCTTGAGGAATATGCTGAGCCTGAGCCACAGCCACAGGCAGATCATGAG CTTGAACCAGTGGAACTTGATGCAGAGAACACCCCTCCTGCAGTCCGATGGCCAAACGCA GCCGAGGCGGAGCGGGATCTGCGTGCTGTGTACCGAGCAATGGTGGGGGCACGCAGTGAA GCAGCACAGGCTGTACTGGACTGCAAGCACTGGGTGAAATGGTGGGGCCTCAGGGACGAG TCTGATGACCAGCTAAGGTTCCTTGTTGAGTGGCGACCACAGCCATGGGAGGCTACTGAA CTTACAAGGCCAATGCCGCCTGGGGATATTGTGGTAGTACCACTGCATGCATCCATAGGC GAGCTGCTTGTTGAGGCAGAGCATGCACTGAGGGATACATACTGCTTCTTTGAGAATTTC CAGGCCGAGTCACTGGATGGCATTACTGGGGATAAATGGGATCCGGTGATGCTTGGTGGA GCAGAGTCTGGTGACACCATTGGTGTGCACGGCCACGGAGCTGACATGGAGACTGGGCTG CGGTGCCAGGGAGGTGCAGATGCGTGGGAGGTGCAGTGCGTTTGTGGTGCACAGGACGAC GATGGGGAGCGCATGGTGGCATGCGATGCATGCAATGTCTGGCACCATACACGCTGTGTC GGCATTGCAGATGGTGCTCCGGTGCCACCATTGTTTCTCTGCATATCCTGCAGTGGCGCG CTAATGGCCGCTGGACCAATTTCTGGATGA

Peptide Sequence

PEP ID	Zm00001d013416_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:10762331:10765607:1 gene:Zm00001d013416 transcript:Zm00001d013416_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 11 description:PHD finger protein MALE MEIOCYTE DEATH 1
Sequence	MPSRRALRRSPPPRQSPQAAADAKEAASPWLPSSSSTSSSSSSASALVRRSAAFSAAGPR GGSGTRVYPLRDFPGGDAAALGGAFRDNVRWLLKQWSCVPGSVSAWRALLSDERTGALVP VIAVEELAASSPLPLCDLCRCAGWSHHWVSKRKYHFIIPAVVDWDQPFRADGLLGHSEHL LHGLIHSNGFGHLLTLRGRVGGSTFLSGCQIMDIWDQLCTALRVRAVSVVDLTQKYSVDL RLLLGVAQSKTWFTRWGYCLAKGCFSVSRSTYTAALEALAALPVDCLRSRHVRRVVTIYR RLSSKPLVTVREFLLCLLDWKHREPPLSPPPVKASSRLMFLLPKSCMMKRPRQPCQRFED VVDLLECRWSKKRLLSAANVVVAKLREHADGTKITRQAVRDAARGGIGDTGLLDFVIKSL NNTVVGNHIVRRVPDPENRVLHFSLEEYAEPEPQPQADHELEPVELDAENTPPAVRWPNA AEAERDLRAVYRAMVGARSEAAQAVLDCKHWVKWWGLRDESDDQLRFLVEWRPQPWEATE LTRPMPPGDIVVVPLHASIGELLVEAEHALRDTYCFFENFQAESLDGITGDKWDPVMLGG AESGDTIGVHGHGADMETGLRCQGGADAWEVQCVCGAQDDDGERMVACDACNVWHHTRCV GIADGAPVPPLFLCISCSGALMAAGPISG

Transcript Sequence

Transcript ID	Zm00001d013416_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:10762331:10765607:1 gene:Zm00001d013416 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 11 description:PHD finger protein MALE MEIOCYTE DEATH 1
Sequence	GCTCTTGGCAATGCCGTCCAGGCGCGCGCTACGGCGGTCTCCGCCGCCACGACAGAGCCC GCAGGCAGCGGCGGACGCGAAGGAGGCGGCGAGCCCGTGGCTACCGTCCTCATCCTCCAC CTCGTCGTCTTCCTCCTCAGCCTCCGCGCTCGTCAGGCGCTCCGCCGCCTTCTCGGCGGC TGGGCCGAGGGGCGGATCGGGGACGCGCGTGTACCCGTTGCGGGACTTCCCGGGCGGGGA CGCGGCCGCGCTCGGCGGTGCGTTCCGGGACAACGTGCGGTGGCTCCTGAAGCAGTGGAG CTGCGTTCCGGGTTCCGTGTCGGCGTGGCGCGCGCTGCTGTCAGACGAGCGGACGGGCGC CTTAGTCCCCGTCATCGCCGTGGAGGAGCTCGCGGCATCGTCGCCCTTGCCGCTCTGCGA TCTCTGTCGCTGCGCCGGTTGGAGCCACCACTGGGTGTCAAAGCGGAAGTACCATTTCAT CATTCCGGCAGTGGTCGACTGGGACCAGCCATTCAGGGCTGATGGGTTACTTGGGCACAG CGAGCACCTCCTACATGGTCTGATCCATAGTAATGGCTTTGGTCACCTTCTCACCCTCCG TGGTCGTGTTGGTGGCTCCACTTTCCTCTCTGGCTGCCAGATCATGGATATATGGGATCA ACTTTGCACAGCTCTCCGTGTAAGAGCCGTCTCTGTTGTGGACTTGACCCAGAAGTACTC TGTGGACCTCCGCCTCCTGCTTGGAGTGGCACAAAGCAAGACTTGGTTCACTCGCTGGGG GTACTGCCTTGCCAAGGGTTGTTTCAGCGTGTCTAGGTCCACTTATACTGCTGCACTTGA AGCCCTTGCTGCCCTGCCTGTTGATTGTCTCCGTAGTCGTCATGTCCGTCGTGTGGTCAC CATCTACCGCCGCCTCTCCAGCAAACCTCTGGTTACAGTCCGCGAGTTTCTCCTCTGCCT GCTTGATTGGAAGCACCGTGAGCCCCCGCTTTCTCCTCCTCCCGTGAAGGCATCCTCGCG GCTGATGTTCTTGCTGCCAAAGTCATGTATGATGAAGAGGCCCAGGCAGCCATGTCAACG CTTTGAGGACGTAGTTGACCTGCTTGAGTGTCGGTGGTCAAAGAAGCGTCTGCTTAGTGC TGCAAATGTTGTTGTTGCAAAGCTGCGAGAGCATGCGGATGGCACAAAGATAACACGGCA AGCAGTGCGAGATGCTGCAAGGGGTGGCATCGGTGACACTGGTCTCCTGGACTTCGTCAT CAAGTCCCTCAATAACACTGTTGTTGGTAACCACATTGTGCGCCGCGTGCCTGACCCTGA GAATCGTGTGCTTCACTTCAGCCTTGAGGAATATGCTGAGCCTGAGCCACAGCCACAGGC AGATCATGAGCTTGAACCAGTGGAACTTGATGCAGAGAACACCCCTCCTGCAGTCCGATG GCCAAACGCAGCCGAGGCGGAGCGGGATCTGCGTGCTGTGTACCGAGCAATGGTGGGGGC ACGCAGTGAAGCAGCACAGGCTGTACTGGACTGCAAGCACTGGGTGAAATGGTGGGGCCT CAGGGACGAGTCTGATGACCAGCTAAGGTTCCTTGTTGAGTGGCGACCACAGCCATGGGA GGCTACTGAACTTACAAGGCCAATGCCGCCTGGGGATATTGTGGTAGTACCACTGCATGC ATCCATAGGCGAGCTGCTTGTTGAGGCAGAGCATGCACTGAGGGATACATACTGCTTCTT TGAGAATTTCCAGGCCGAGTCACTGGATGGCATTACTGGGGATAAATGGGATCCGGTGAT GCTTGGTGGAGCAGAGTCTGGTGACACCATTGGTGTGCACGGCCACGGAGCTGACATGGA GACTGGGCTGCGGTGCCAGGGAGGTGCAGATGCGTGGGAGGTGCAGTGCGTTTGTGGTGC ACAGGACGACGATGGGGAGCGCATGGTGGCATGCGATGCATGCAATGTCTGGCACCATAC ACGCTGTGTCGGCATTGCAGATGGTGCTCCGGTGCCACCATTGTTTCTCTGCATATCCTG CAGTGGCGCGCTAATGGCCGCTGGACCAATTTCTGGATGAGACACTAACGGTACCTGAAG TTAAGTGACAATTCTTTTGCACCTTTTTCAGTTCATGCCTGACAGGTAGGTGTCTGACTA GTAAACCAGATACTATTGAGACCTCGTGTGTAAAGTGCGTTGCTGTAGTAGTATGTGATG AGTTTAGTAACGATGGAGTAATACCGAATGCTATCTGTACTAAGTCGACTAGTCGTAGTA GAGTAGAGAGGATTAGGCAGTAGAAAGGGAAGCACTATCCTTGTCGTTAGCAATCCGACT GGAAATTTTGTACATGGACATATTACAGAATAGACGCGGTAAATAGCTGTCCTGTGATTT GCGCCTTTCTACCGTCTGTGAATCTTGGCAACGAAGTTTAACTTGTTCATTGTGTTATAA GAATTTATTTATTGTG