Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013398_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:10354488:10356964:1 gene:Zm00001d013398 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCGCCGGCGGTGGGACAGCTGCTTCTCGGGCAGCGACGTCCGCGTGGGCGGGCGCGTC
CCCCCCGAGGAGCCGGAGCCGGAGGTCTTCTCCTTCGCCGAGCCCCTCCCGTCGTGGCCC
ACAGGCGGGGGATTCGCGCGGGGGAGGATACGTATCGGCGGAGGGGAGCTGGAGCTCGCC
GCGGCCACCGCGTTCCAGAAGATCTGCACCCTGTCGTCGCGGCGGCGTGGCGGCGGCGGC
AGCGCCACCTTTTACCGGCCGGTCGGCGTCCCAGAGGGGTTCTCGCTCCTGGGTTACTAC
TGCCAGCCTAACTGCCGCCCGCTCCACGGCCACGTCCTCGTTGCCAGAGCGGGGGAGCGC
CCGTCCGGCGCCTCACCTCAGCCGCCGCCGCCGCCGCTCTGCAAGCCGCTGGACTATACG
CTCATCTGGGAATTCCAAGCCAGTGGCGATACCGGCTACGGCTACGGTCGAAGCGACGCC
TACTTCTGGATCCCCGTGCCGCCGGAGAGGTATCGGGCGCTCGGGTGTCTCGTGACCACG
GAACCACGGAGACCACCGCTCGAGGAGGTGGTATGCGTCCGCGAGGACCTGACGGACGAG
TGCGAGCCGCACGGCTCGCTGCTCTGCCTAGAGCAGCCGCGGCCGTCTTCGTTCTTCACC
GTGCGGGGCGTTCGTCCGGTGCGCCGAGGGATACGGGAGAAAGGAGTGTGCGTGGGCACC
TTCTGCTGCGCCGCTGACGGGCTCCCCCCGCGCGAGCACGGCATGGCGTGCCTGGGCAAC
GTCGAGCTCGACCTGTCGGCGATGCCAACGCTGGAGCAGGCGCACGCGGTGATCCGGCAC
TACGGCCCCACGCTGTTCTTCCACCCCAAGGAGGTCTACCTGCCGTCGTCCGTCTCTTGG
TTCTTCAAGAACGGCGCCGCGTTGTACAGGCGAGGGGGAGACACCGCGGGCGAGGAGATC
GACGGCGAGGGGTCCAACCTCCCTGGTGGCGGTTGCAACGACGGGGAGTTCTGGATCGAC
GTTCCCAGCGGCGAGCGGGGCCGCGCCGTGTGCCGCGGCAGCATCGACAGCGCGGAGCTC
TACGCGCACGTGAAGCCGGCCATGGGCGGCACGTGCACCGACGTGGCCATGTGGGTGTTC
TGCCCGTTCAACGGCCCGGCGAGGCTCAAGCTGGGCCCGATCAGCCTCCCGCTGGGCAAG
ACCGGGCGGCACGTCGGGGACTGGGAGCACTTCACGTTCCGCGTCAGCAACCTCACCGGT
GAGCTCATGGGCGTGTACTACTCGCAGCACAGCGGCGGGCACTGGGTGGACGCCTCCGCA
TTGGAGTACATCGACGGCAACCGGCCTGTGGTGTACTCGTCCAGGAACGGGCACGCGAGC
TACGCGTACCCTGGCGTGTACCTGCAGGGCTCGGCGGCGCTCGGGGTCGGCATCCGCAAC
GACGCCGCTCGGAGCAGCCTATTCGTGGACTCCAGCGCCAGGTACCGCATCGTTGCGGCG
GGGTATCTGGGCGAGGGCGCCGTCGTCGAGCCGCAGTGGCTGCAGTTCATGCGGGAGTGG
GGTCCGACGGTGGTGTACAAGTGGAGGAAGCGGATGGAGTGGGTGATCGGCCGCCTACCT
CCCTGGCTCAGGTGCAGAGCGGAGAGCATGCTGAACAAGATGCCCAACGAGCTGTCCAGG
GAAGAAGGGCCGACCGGGCCCAAGGAGAAGAACAACTGGGAGGGAGACGAGAGATGGTAA

Peptide Sequence

PEP ID

Zm00001d013398_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:10354488:10356964:1 gene:Zm00001d013398 transcript:Zm00001d013398_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MRRRWDSCFSGSDVRVGGRVPPEEPEPEVFSFAEPLPSWPTGGGFARGRIRIGGGELELA
AATAFQKICTLSSRRRGGGGSATFYRPVGVPEGFSLLGYYCQPNCRPLHGHVLVARAGER
PSGASPQPPPPPLCKPLDYTLIWEFQASGDTGYGYGRSDAYFWIPVPPERYRALGCLVTT
EPRRPPLEEVVCVREDLTDECEPHGSLLCLEQPRPSSFFTVRGVRPVRRGIREKGVCVGT
FCCAADGLPPREHGMACLGNVELDLSAMPTLEQAHAVIRHYGPTLFFHPKEVYLPSSVSW
FFKNGAALYRRGGDTAGEEIDGEGSNLPGGGCNDGEFWIDVPSGERGRAVCRGSIDSAEL
YAHVKPAMGGTCTDVAMWVFCPFNGPARLKLGPISLPLGKTGRHVGDWEHFTFRVSNLTG
ELMGVYYSQHSGGHWVDASALEYIDGNRPVVYSSRNGHASYAYPGVYLQGSAALGVGIRN
DAARSSLFVDSSARYRIVAAGYLGEGAVVEPQWLQFMREWGPTVVYKWRKRMEWVIGRLP
PWLRCRAESMLNKMPNELSREEGPTGPKEKNNWEGDERW

Transcript Sequence

Transcript ID

Zm00001d013398_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:10354488:10356964:1 gene:Zm00001d013398 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCCCATTCTCGGGTCGAGACGGCAAGCGTCAGACCAGTGACGAAGCAAATCTACCATGCG
ATGCGAGCATGACAAATAAATACCCTTTACCTCGTCCTTGCCGCCGCGGCCGCCGGGGCG
TCCCGGATCGTGGTGGTGCTTGCCGTCGCTGGTGAGTCCATGAGACGTGTGTCACCCGGC
CGTTCAGCGCAGAGCCCATCCGGCCATCCCGTTCGTACCTAACCGGCACCTTCTTCTGCG
GATCAATCCGGCAAAGCCAGCGCGCGCGATGCGCCGGCGGTGGGACAGCTGCTTCTCGGG
CAGCGACGTCCGCGTGGGCGGGCGCGTCCCCCCCGAGGAGCCGGAGCCGGAGGTCTTCTC
CTTCGCCGAGCCCCTCCCGTCGTGGCCCACAGGCGGGGGATTCGCGCGGGGGAGGATACG
TATCGGCGGAGGGGAGCTGGAGCTCGCCGCGGCCACCGCGTTCCAGAAGATCTGCACCCT
GTCGTCGCGGCGGCGTGGCGGCGGCGGCAGCGCCACCTTTTACCGGCCGGTCGGCGTCCC
AGAGGGGTTCTCGCTCCTGGGTTACTACTGCCAGCCTAACTGCCGCCCGCTCCACGGCCA
CGTCCTCGTTGCCAGAGCGGGGGAGCGCCCGTCCGGCGCCTCACCTCAGCCGCCGCCGCC
GCCGCTCTGCAAGCCGCTGGACTATACGCTCATCTGGGAATTCCAAGCCAGTGGCGATAC
CGGCTACGGCTACGGTCGAAGCGACGCCTACTTCTGGATCCCCGTGCCGCCGGAGAGGTA
TCGGGCGCTCGGGTGTCTCGTGACCACGGAACCACGGAGACCACCGCTCGAGGAGGTGGT
ATGCGTCCGCGAGGACCTGACGGACGAGTGCGAGCCGCACGGCTCGCTGCTCTGCCTAGA
GCAGCCGCGGCCGTCTTCGTTCTTCACCGTGCGGGGCGTTCGTCCGGTGCGCCGAGGGAT
ACGGGAGAAAGGAGTGTGCGTGGGCACCTTCTGCTGCGCCGCTGACGGGCTCCCCCCGCG
CGAGCACGGCATGGCGTGCCTGGGCAACGTCGAGCTCGACCTGTCGGCGATGCCAACGCT
GGAGCAGGCGCACGCGGTGATCCGGCACTACGGCCCCACGCTGTTCTTCCACCCCAAGGA
GGTCTACCTGCCGTCGTCCGTCTCTTGGTTCTTCAAGAACGGCGCCGCGTTGTACAGGCG
AGGGGGAGACACCGCGGGCGAGGAGATCGACGGCGAGGGGTCCAACCTCCCTGGTGGCGG
TTGCAACGACGGGGAGTTCTGGATCGACGTTCCCAGCGGCGAGCGGGGCCGCGCCGTGTG
CCGCGGCAGCATCGACAGCGCGGAGCTCTACGCGCACGTGAAGCCGGCCATGGGCGGCAC
GTGCACCGACGTGGCCATGTGGGTGTTCTGCCCGTTCAACGGCCCGGCGAGGCTCAAGCT
GGGCCCGATCAGCCTCCCGCTGGGCAAGACCGGGCGGCACGTCGGGGACTGGGAGCACTT
CACGTTCCGCGTCAGCAACCTCACCGGTGAGCTCATGGGCGTGTACTACTCGCAGCACAG
CGGCGGGCACTGGGTGGACGCCTCCGCATTGGAGTACATCGACGGCAACCGGCCTGTGGT
GTACTCGTCCAGGAACGGGCACGCGAGCTACGCGTACCCTGGCGTGTACCTGCAGGGCTC
GGCGGCGCTCGGGGTCGGCATCCGCAACGACGCCGCTCGGAGCAGCCTATTCGTGGACTC
CAGCGCCAGGTACCGCATCGTTGCGGCGGGGTATCTGGGCGAGGGCGCCGTCGTCGAGCC
GCAGTGGCTGCAGTTCATGCGGGAGTGGGGTCCGACGGTGGTGTACAAGTGGAGGAAGCG
GATGGAGTGGGTGATCGGCCGCCTACCTCCCTGGCTCAGGTGCAGAGCGGAGAGCATGCT
GAACAAGATGCCCAACGAGCTGTCCAGGGAAGAAGGGCCGACCGGGCCCAAGGAGAAGAA
CAACTGGGAGGGAGACGAGAGATGGTAAGACTGGTACGTAGGAACAGTGCTCAACGATGT
GATTTTATAACATGTGTGGCTTAAATTAAGGGGCGTGCTATATTTAGGTGTTTGAAAAAC
AGCTTCTTCGCGGACCATACACTAGTACAATTTGGCTCTATACCAGCGGTACGCTTTTTA
CATCACAGACGGTTCGGTTAGAAAACCGCCTGTAATGTCCCAGGCGGTTCAGTACGCCTG
TGATGTAATAGTATCACAAGCGGTTTTTGTTTAGGACCGTCTGTGGTGCTCTATCCTTTT
CACAAACGGACCCTAAGAAAAAA