Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013330_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:8777764:8782748:-1 gene:Zm00001d013330 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin family protein / WD-40 repeat family protein
Sequence

ATGGACAAGCTCCGCGTCCACCGCTGCACCGGCGACGCGGTCGAGTGGTCCCCCTCTCCC
ATCGTCGCGCTCGCCGCCTCTCCCTGCGCCTCCCAGGTCGCCGCCGCGCGTGAAGACGGC
TCGCTCGAGCTCTGGCTCGTCTCCCCGGGCTCCGTCGGCTGGCACAACCAGCTCACTATA
CAAGGCAACGCCGCGTCGAGGGTCACATCACTGGTGTGGGGGCGGAGAGGTGGAGTGACC
GGCCGGCTGCTCTCGTCCAGCATTGATGGGTCGGTGTCCGAATGGGATCTCTTTCACCTG
CAGCAAAAGACTGTTCTAGATACTGTTGGAGTTCCAATCTGGCAAATGGCCATCGAACCT
TTGGATGATGCTAAAAATACTGAAAATAATAGCTCAGAGTTTGCTGTCAATGGTCATACA
AACCAAAATGACTCCAGCGATTCTGACTTTAGTAACATTGATGATGGTGACAACTCTGAG
GATGAAGATGGTTCTACCAACACAAGATCTTCATATCATGGGAATGATTTCCAGCGAATG
GCTCTTGCATGTGATGATGGTTCTGTACGATTGTTTAACGTGCCTGATTCAGGTGCATTG
ACTTACTATAGATTTCTTCCCAGAGTGAGCGGGCGGTCTCTCAGCGTGACATGGAGTAGT
AACGCCAAATTTGTATTTTCTGGCAGCAGTGATGGTTTAATCAGATGCTGGGATTCAACA
TCTTTCCATGAAATGTATCGTATTACTGCTGGATTAGGAGGGGCTGGTACCTCACCTGAA
CTTTGCATCTGGACACTATTGTTTCTGAGGTGTGGAACTATTGTTAGTGGAGATAGTACC
GGGAGTGTACAGTTTTGGGATAGCCGCCATGGAACACTTCTGCAAGCTCACTCCTATCAT
AAAGGCGACGTGAATGCACTAACAACTGTGCCTGGTGAGAACAGGGTATTTTCCGCAGGG
TCCGATGGCCAGGTAATTTTATACAAAATATCAAAAGATGAATTTGGTGCTACTAAAAAT
GTGGTCAAAGAGCAAGTTCACAAATGGGTCTATGTGGGATATGTGAGAGCTCACACTCAT
GATGTAAGGGCACTGACCATGGCTGTACCTATCTGTAGAGAAGATACATCACCTGAGGAA
AAGGTGGTGAAGATTCGCCGGCGTGAAAAACATGAATTTAGTTACCACAAATGGGCTCAT
CTTGGTGTTCCAATGCTTATATCTGGTGGTGATGACACCAAGCTGTTTGCATATTCAGCA
AGAGAGTTTACTCAGTTTGCACCTCATAATTTCTGCCCTGCACCTCAACGCCCTTTGATA
AAGATGGCTAGGGATAGCACAGTCAATGGAGATTCTGTAATGCTTGTCCAGTCTCCAAAC
TGGTTGGATATTTTACTTGTGACAGTTCAGAACAAATTGACGACTCCAAGTACATCATCA
TCTAGAGGAGATGCTACAGTCCGACAACTTGCTCGTTTGAAAAGCAAGGGGTCCAGAAAA
ATCATTTCTAGTGCTGCCTCTGCCAATGGAACACTTTTGGCCTATTCAGATGGTGTGAGA
CCCTGCCTCTTTGCACTAAGGCATAAGGGTGGAAAGAAGTATACCCTTGACAAATTAGAG
CTACCAAAAGGATTGCCCTGTTCTCAGAGTATGGCGTTTACGGTTGATTCGTCCAATTTG
ATACTTGCGGGACGTAATGGAAAAATATACATCATTGACATTGCAACAAGAGAAATTTCA
AATGTATTTCACCCTACAAGAAAGGCAGATGGAGCAAAAATCTCAAGAGAATCACCTATA
ACGAAGATGTTCCTAAGTGCAGATGGGCAATGGCTGGCTGCAGTTAACTGCTATGGCGAT
ATTTATGTATTTAATCTTGAGGTGCAAAGGCAACACTGGTTCATATCCCGAATGAACGGT
GGTTCTGTTACATCTGGTGGATTTTGCCCCAAAAACAACACACTTGTGATAACTACATCT
AAAAATGAGGTGTATGTATTTGATGTGGAAGCAAAACAATTAGGCGAATGGTCCAAGCGA
TATACACACCAGTTGCCCAGAAGTTTCCAGGAATTCCCTGGAGAGGTCATTGGCTTATCA
TTTCCTCCGCAAAGCTCATCGTCAGTTGTTGTATACAGTACCAGGGCTATGTGCAACATC
GATTTCGGATTGCCAGTTGTTGAGGATGTTGGCTTGCCAAATGGATCAGGTGCACCAGCA
GAGAAGGCAGACGCAAAAAAGAGTAAAAAAACAAGGCAGAAGCGTAAGGCCCGTGATGAA
GAGTCTACAGAGGAGAAAAGGAACAACTTCAACTTCTTTGCGTTTAAAGAACCAGTGCTC
TTTGTTGGGCATCTACAGGACAGTTCAATTTTAATGGTAGAGAAGCGATGGATGGATGTT
GTTGAAGGTTTCAGCGCACCAGTTGACAGACATATATATGGCACATGA

Peptide Sequence

PEP ID

Zm00001d013330_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:8777764:8782748:-1 gene:Zm00001d013330 transcript:Zm00001d013330_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin family protein / WD-40 repeat family protein
Sequence

MDKLRVHRCTGDAVEWSPSPIVALAASPCASQVAAAREDGSLELWLVSPGSVGWHNQLTI
QGNAASRVTSLVWGRRGGVTGRLLSSSIDGSVSEWDLFHLQQKTVLDTVGVPIWQMAIEP
LDDAKNTENNSSEFAVNGHTNQNDSSDSDFSNIDDGDNSEDEDGSTNTRSSYHGNDFQRM
ALACDDGSVRLFNVPDSGALTYYRFLPRVSGRSLSVTWSSNAKFVFSGSSDGLIRCWDST
SFHEMYRITAGLGGAGTSPELCIWTLLFLRCGTIVSGDSTGSVQFWDSRHGTLLQAHSYH
KGDVNALTTVPGENRVFSAGSDGQVILYKISKDEFGATKNVVKEQVHKWVYVGYVRAHTH
DVRALTMAVPICREDTSPEEKVVKIRRREKHEFSYHKWAHLGVPMLISGGDDTKLFAYSA
REFTQFAPHNFCPAPQRPLIKMARDSTVNGDSVMLVQSPNWLDILLVTVQNKLTTPSTSS
SRGDATVRQLARLKSKGSRKIISSAASANGTLLAYSDGVRPCLFALRHKGGKKYTLDKLE
LPKGLPCSQSMAFTVDSSNLILAGRNGKIYIIDIATREISNVFHPTRKADGAKISRESPI
TKMFLSADGQWLAAVNCYGDIYVFNLEVQRQHWFISRMNGGSVTSGGFCPKNNTLVITTS
KNEVYVFDVEAKQLGEWSKRYTHQLPRSFQEFPGEVIGLSFPPQSSSSVVVYSTRAMCNI
DFGLPVVEDVGLPNGSGAPAEKADAKKSKKTRQKRKARDEESTEEKRNNFNFFAFKEPVL
FVGHLQDSSILMVEKRWMDVVEGFSAPVDRHIYGT

Transcript Sequence

Transcript ID

Zm00001d013330_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:8777764:8782748:-1 gene:Zm00001d013330 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin family protein / WD-40 repeat family protein
Sequence

GACCTTCCCTTCCCTCAGAACCCTAACGAGCGGTGAGCCGCCTCTCTCGAGCGCCTACCA
CTCTGCCCCCTGCGCCGCCTGCGGCCTGCCCCCAACTCCCGCACCATCGCGAAGTCCTCG
ACGTCTAGGTCGCCATTCCAGTACCTTCTAGAATATCAGGATCGCCAGCGCCGCCGCATC
GGGCGGCCCTGTGGCCCATGGACAAGCTCCGCGTCCACCGCTGCACCGGCGACGCGGTCG
AGTGGTCCCCCTCTCCCATCGTCGCGCTCGCCGCCTCTCCCTGCGCCTCCCAGGTCGCCG
CCGCGCGTGAAGACGGCTCGCTCGAGCTCTGGCTCGTCTCCCCGGGCTCCGTCGGCTGGC
ACAACCAGCTCACTATACAAGGCAACGCCGCGTCGAGGGTCACATCACTGGTGTGGGGGC
GGAGAGGTGGAGTGACCGGCCGGCTGCTCTCGTCCAGCATTGATGGGTCGGTGTCCGAAT
GGGATCTCTTTCACCTGCAGCAAAAGACTGTTCTAGATACTGTTGGAGTTCCAATCTGGC
AAATGGCCATCGAACCTTTGGATGATGCTAAAAATACTGAAAATAATAGCTCAGAGTTTG
CTGTCAATGGTCATACAAACCAAAATGACTCCAGCGATTCTGACTTTAGTAACATTGATG
ATGGTGACAACTCTGAGGATGAAGATGGTTCTACCAACACAAGATCTTCATATCATGGGA
ATGATTTCCAGCGAATGGCTCTTGCATGTGATGATGGTTCTGTACGATTGTTTAACGTGC
CTGATTCAGGTGCATTGACTTACTATAGATTTCTTCCCAGAGTGAGCGGGCGGTCTCTCA
GCGTGACATGGAGTAGTAACGCCAAATTTGTATTTTCTGGCAGCAGTGATGGTTTAATCA
GATGCTGGGATTCAACATCTTTCCATGAAATGTATCGTATTACTGCTGGATTAGGAGGGG
CTGGTACCTCACCTGAACTTTGCATCTGGACACTATTGTTTCTGAGGTGTGGAACTATTG
TTAGTGGAGATAGTACCGGGAGTGTACAGTTTTGGGATAGCCGCCATGGAACACTTCTGC
AAGCTCACTCCTATCATAAAGGCGACGTGAATGCACTAACAACTGTGCCTGGTGAGAACA
GGGTATTTTCCGCAGGGTCCGATGGCCAGGTAATTTTATACAAAATATCAAAAGATGAAT
TTGGTGCTACTAAAAATGTGGTCAAAGAGCAAGTTCACAAATGGGTCTATGTGGGATATG
TGAGAGCTCACACTCATGATGTAAGGGCACTGACCATGGCTGTACCTATCTGTAGAGAAG
ATACATCACCTGAGGAAAAGGTGGTGAAGATTCGCCGGCGTGAAAAACATGAATTTAGTT
ACCACAAATGGGCTCATCTTGGTGTTCCAATGCTTATATCTGGTGGTGATGACACCAAGC
TGTTTGCATATTCAGCAAGAGAGTTTACTCAGTTTGCACCTCATAATTTCTGCCCTGCAC
CTCAACGCCCTTTGATAAAGATGGCTAGGGATAGCACAGTCAATGGAGATTCTGTAATGC
TTGTCCAGTCTCCAAACTGGTTGGATATTTTACTTGTGACAGTTCAGAACAAATTGACGA
CTCCAAGTACATCATCATCTAGAGGAGATGCTACAGTCCGACAACTTGCTCGTTTGAAAA
GCAAGGGGTCCAGAAAAATCATTTCTAGTGCTGCCTCTGCCAATGGAACACTTTTGGCCT
ATTCAGATGGTGTGAGACCCTGCCTCTTTGCACTAAGGCATAAGGGTGGAAAGAAGTATA
CCCTTGACAAATTAGAGCTACCAAAAGGATTGCCCTGTTCTCAGAGTATGGCGTTTACGG
TTGATTCGTCCAATTTGATACTTGCGGGACGTAATGGAAAAATATACATCATTGACATTG
CAACAAGAGAAATTTCAAATGTATTTCACCCTACAAGAAAGGCAGATGGAGCAAAAATCT
CAAGAGAATCACCTATAACGAAGATGTTCCTAAGTGCAGATGGGCAATGGCTGGCTGCAG
TTAACTGCTATGGCGATATTTATGTATTTAATCTTGAGGTGCAAAGGCAACACTGGTTCA
TATCCCGAATGAACGGTGGTTCTGTTACATCTGGTGGATTTTGCCCCAAAAACAACACAC
TTGTGATAACTACATCTAAAAATGAGGTGTATGTATTTGATGTGGAAGCAAAACAATTAG
GCGAATGGTCCAAGCGATATACACACCAGTTGCCCAGAAGTTTCCAGGAATTCCCTGGAG
AGGTCATTGGCTTATCATTTCCTCCGCAAAGCTCATCGTCAGTTGTTGTATACAGTACCA
GGGCTATGTGCAACATCGATTTCGGATTGCCAGTTGTTGAGGATGTTGGCTTGCCAAATG
GATCAGGTGCACCAGCAGAGAAGGCAGACGCAAAAAAGAGTAAAAAAACAAGGCAGAAGC
GTAAGGCCCGTGATGAAGAGTCTACAGAGGAGAAAAGGAACAACTTCAACTTCTTTGCGT
TTAAAGAACCAGTGCTCTTTGTTGGGCATCTACAGGACAGTTCAATTTTAATGGTAGAGA
AGCGATGGATGGATGTTGTTGAAGGTTTCAGCGCACCAGTTGACAGACATATATATGGCA
CATGATTCTTGCTAACATCGGCCTTTGGCGCTCGTGACAAGCAAACCATTGTTTTTGTTT
TTTTTTCTCAAGCATGTCAACGGTTGAAAGGGGCTACAAGATATTGCAGCACAAAGTGAA
AGCTGCACGTAGACTTTAGAGTCGGGGATTGTGGCAATGGTGTATTTTCTTTTGTTCTCT
AGTAATTTTGTCATACCTTGTCGCTGCGCAAAATTTTGTCACATGTAAACACTGTATCAT
CACTTCTGTTATTGTTGAGCTGATATCTTCTGTTTGCCTCAGGTGCGTGCTGTCTGTATA
TAAGCCCAATTCGCGTGCTGCTTTGGTG