Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013261_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:7367302:7368587:-1 gene:Zm00001d013261 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cysteine protease 1

Sequence

ATGTCCGCGTCACGGTTCCTCCTCGCCGTCCTCGTCGTGGGCAGCGCCGTACTGTGCACC
GCCGCCGCTCCCCGCGCGCTCGCGGCGGCCGCCGCCGCGATGGCGTCGCGGCACGAGAAG
TGGATGGCGGAGCACGGGCGCGCGTACAAGGATGAGGCCGAGAAGGCGCGGCGGCTGGAG
GTGTTCCGGGCCAACGCGGAGCTGATCGACTCGTTCAACGCCGCAGGGACGCACAGCCAC
CGGCTGGCGACCAACAGGTTCGCCGACCTCACCGTCGAGGAGTTCCGCGCGGCCAGGACC
GGGCTCCGGCCGCGCCCGGCGCCGTCCGCGGGCGCCGGCCGGTTCAGGTACGAGAACTTC
AGCCTGGCGGACGCGGCGCAGAGCGTGGACTGGCGGGCCATGGGTGCCGTCACCGGCGTC
AAGGACCAGGGAGCGTGCGGCTGCTGCTGGGCGTTCTCGGCGGTGGCGGCGGTGGAAGGG
CTGAACAAGATCCGGACGGGGCGGCTGGTGTCGCTGTCGGAGCAGGAGCTGGTGGACTGT
GACGTCAGCGGCGTGGACCAGGGCTGCGACGGCGGCCTCATGGACAACGCCTTCCAGTTC
GTCGCGCGCCGCGGCGGGCTGGCCTCGGAGTCGGGCTACCCGTACCAGGGCCGGGACGGG
CCCTGCCGCTCGTCCGCCGCCGCCGCGCGGGCCGCGTCCATCCGGGGCCACGAGGACGTG
CCGCGCAACAACGAGGCCGCGCTCGCGGCCGCCGTGGCCAACCAGCCCGTGTCCGTGGCC
ATCAACGGCGAGGACATGGCGTTCCGCTTCTACGACAGCGGCGTGCTGGGCGGGGCCTGC
GGCACGGACCTCAACCACGCCATCACGGCCGTCGGGTACGGCACGGCGAACGACGGCACA
AGGTACTGGCTGATGAAGAACTCCTGGGGCGCGTCGTGGGGCGAGGGCGGATACGTCCGG
ATCCGCCGCGGCGTCCGCGGGGAGGGCGTCTGCGGTCTCGCCAAGCTGCCGTCCTACCCC
GTCTAG

Peptide Sequence

PEP ID

Zm00001d013261_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:7367302:7368587:-1 gene:Zm00001d013261 transcript:Zm00001d013261_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cysteine protease 1

Sequence

MSASRFLLAVLVVGSAVLCTAAAPRALAAAAAAMASRHEKWMAEHGRAYKDEAEKARRLE
VFRANAELIDSFNAAGTHSHRLATNRFADLTVEEFRAARTGLRPRPAPSAGAGRFRYENF
SLADAAQSVDWRAMGAVTGVKDQGACGCCWAFSAVAAVEGLNKIRTGRLVSLSEQELVDC
DVSGVDQGCDGGLMDNAFQFVARRGGLASESGYPYQGRDGPCRSSAAAARAASIRGHEDV
PRNNEAALAAAVANQPVSVAINGEDMAFRFYDSGVLGGACGTDLNHAITAVGYGTANDGT
RYWLMKNSWGASWGEGGYVRIRRGVRGEGVCGLAKLPSYPV

Transcript Sequence

Transcript ID

Zm00001d013261_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:7367302:7368587:-1 gene:Zm00001d013261 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cysteine protease 1

Sequence

AAAAAAATATGTCCGCGTCACGGTTCCTCCTCGCCGTCCTCGTCGTGGGCAGCGCCGTAC
TGTGCACCGCCGCCGCTCCCCGCGCGCTCGCGGCGGCCGCCGCCGCGATGGCGTCGCGGC
ACGAGAAGTGGATGGCGGAGCACGGGCGCGCGTACAAGGATGAGGCCGAGAAGGCGCGGC
GGCTGGAGGTGTTCCGGGCCAACGCGGAGCTGATCGACTCGTTCAACGCCGCAGGGACGC
ACAGCCACCGGCTGGCGACCAACAGGTTCGCCGACCTCACCGTCGAGGAGTTCCGCGCGG
CCAGGACCGGGCTCCGGCCGCGCCCGGCGCCGTCCGCGGGCGCCGGCCGGTTCAGGTACG
AGAACTTCAGCCTGGCGGACGCGGCGCAGAGCGTGGACTGGCGGGCCATGGGTGCCGTCA
CCGGCGTCAAGGACCAGGGAGCGTGCGGCTGCTGCTGGGCGTTCTCGGCGGTGGCGGCGG
TGGAAGGGCTGAACAAGATCCGGACGGGGCGGCTGGTGTCGCTGTCGGAGCAGGAGCTGG
TGGACTGTGACGTCAGCGGCGTGGACCAGGGCTGCGACGGCGGCCTCATGGACAACGCCT
TCCAGTTCGTCGCGCGCCGCGGCGGGCTGGCCTCGGAGTCGGGCTACCCGTACCAGGGCC
GGGACGGGCCCTGCCGCTCGTCCGCCGCCGCCGCGCGGGCCGCGTCCATCCGGGGCCACG
AGGACGTGCCGCGCAACAACGAGGCCGCGCTCGCGGCCGCCGTGGCCAACCAGCCCGTGT
CCGTGGCCATCAACGGCGAGGACATGGCGTTCCGCTTCTACGACAGCGGCGTGCTGGGCG
GGGCCTGCGGCACGGACCTCAACCACGCCATCACGGCCGTCGGGTACGGCACGGCGAACG
ACGGCACAAGGTACTGGCTGATGAAGAACTCCTGGGGCGCGTCGTGGGGCGAGGGCGGAT
ACGTCCGGATCCGCCGCGGCGTCCGCGGGGAGGGCGTCTGCGGTCTCGCCAAGCTGCCGT
CCTACCCCGTCTAGAGCGCCGATCGCGTC