Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013247_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:5:7089014:7093843:1 gene:Zm00001d013247 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGAGCTTCACTCCTGTTCCAAGGTTCAGGGGGGCAGCCTATTCGCAGTTGTGTCCTCAG
TCTAGCAGTTGTGCTGAACATTTGGTAAATGTGGATGGGGCGAGTGCAAAAGACTTGTCA
GTTGACCCAAGCACATTTTGTATTCCGCAAGATGCTAATCAGGGATTTTGTAGCCGAGCT
TTACAGTACACTAGTTCTGTTTCAAAGCAGGGATTTGCAGCTCAAGGTCTTCCTGTAAAT
GCTGCAGAGTTTGGTCTGAATAATGATTCTTCTTTGGTGGGAGGATATCAACAATTTGAC
TACCTTCTGGGGCCTCCTCAAACTGAAGTGTGTGAAGGAATGTGGATGAAAAATATCAAC
ACAAGTATCATCCACCGGCGTAGACCTTCTAATGCATCCTGCCTTGATCATACAGAAGAA
CTAACTTCCTATGAAAATGATGAGGGAGCTATCTCATTTGGAAGTAGTTGTAGCACAGGA
ATTGCGAGTTATCCATATAGTACTCCTTTGCAAAGAAATAGCCACATTTCGGATACGCGG
GATGGAACTTGGGATGCTCTCGTGCAAATGCAAGAGGCTTTGGAAGCATCCAACAGTGAC
AATGGACTCAATGAAGAGTGCAGTGATTTGACTTTCAATCATGCAGAACTTTCAGGTGGG
AATGCCGTAAAGCATAAAGTTGTTTGGGACAATGGCTCTTTAAACAGTCCATCTTTCACC
TCAAATTTATTGTCTTTCCCTGGTGATACTGAGACCACCCTCACAAGTGCCTCCACTGTT
TATTGTACCTTTCAGAACTTTGCTGATCTCCAACATAAGATGAACAACAATGAGCAAAAC
AAATTATCTAGTGAGGTTGAACTGCCTCGTCAGAAAGTGCCCATGACAAACCATGTTAAT
GGAAGTGGAGGTGAAATGCATTCTGCTGAATGGGGAACGAACCCTGGTCTCATAGAATCT
TCTGGCTTTATGCCAAGCAATGAAGACAGACAAAACGATATATCACATCAACCGTCAAGT
TCATTTGTATACAGTGCAGATGGAACTGTGGATCATTGCTCAAAAAAGTCACCCCTCATG
TATGAATGTGAAGAGCAGATGGAAATTGATTCACTTTTAAATTCATTCGGTGTATCAACT
GATTCATTTTCACAAACATATGGAATGTTTGAGCGAAGCAACAATTTGGTTGAGTTTGAT
ATGAAGACCGAATTAGATGAAAGTGGTTCTGCTGCATGCTTTAATAATAATGCCCCATAT
ATGCAAACTGGACCACCTGAGTCAGCTATATCTGATGGATCTTCTTATCCTGAACAGTAT
CAGTCTACTTCTCAAACATGTGGCTTAGTTTATGCTTCAGCATCTCAGTGGCAAAATATG
TCAAGTTCTGGATTGCCTTTACTGGATTGTCGCAAAAGTATTGGTGAGCCCACTTCAATA
ATTAGCCTGGGGGGAAATGGTAAAGGACACTTGCTGCCCACAAGTGAAGATACTTTATTA
CAGAAACCACAGAGTGTTGCTCCTGATGCTAGATTGGAAATGACCGACAATGTTGCTGAT
TGCTATCTGGAGTCTGCTGCTAGCTTGGATGGCCATTCTTGTCCACTAGGAGCTTCCGCA
TGTCATGATGAAGCAATGGCAGCCAAAGATTTGCAGACAGCACAACATGGCGTAGTCACA
GATTGCACCTTTGGAATACATACTTCAAACCACGCTGGACATTCAGACATGCTGCTACCC
ATTACACAGACTACTTCTGTTCAAGAGCCTGGCTTGAGTTTGTCCAAGGATCTGAACTCA
TCATGTATTCGAGGAACAGAGGTTAAGAAAGTAGATTTAACAGCAACATACAATTCTGAA
CGCCATGGCATCCTCCGCCTCAAGTCTTTTGAACAAAAAACTCCTGAGAGTATGGGTATG
AAAACATACATATATCATTGTGGTGATCATAGCCAGATTGTTGATCCTCAGCAGAGTATC
ATACTCGCTGCAAGCAAACCTTCACACTCAAGTGTTTTGCCAGTTGACAAATCTGATGGC
AAGGTCGTTTCACAGCAAAAAAAGCGGAAAAGGGCTGCAGAAAACCTTTTAGCGTGGCAT
GATCACATCATGCCCGGGCATGGGAGCATGCATCGTAGAAGAACACCTGAATTGGATTGG
GCTCGTGCTACCAAAAGATTGGTTGAGAAGGTTATATGCTAG

Peptide Sequence

PEP ID

Zm00001d013247_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:5:7089014:7093843:1 gene:Zm00001d013247 transcript:Zm00001d013247_T010 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSFTPVPRFRGAAYSQLCPQSSSCAEHLVNVDGASAKDLSVDPSTFCIPQDANQGFCSRA
LQYTSSVSKQGFAAQGLPVNAAEFGLNNDSSLVGGYQQFDYLLGPPQTEVCEGMWMKNIN
TSIIHRRRPSNASCLDHTEELTSYENDEGAISFGSSCSTGIASYPYSTPLQRNSHISDTR
DGTWDALVQMQEALEASNSDNGLNEECSDLTFNHAELSGGNAVKHKVVWDNGSLNSPSFT
SNLLSFPGDTETTLTSASTVYCTFQNFADLQHKMNNNEQNKLSSEVELPRQKVPMTNHVN
GSGGEMHSAEWGTNPGLIESSGFMPSNEDRQNDISHQPSSSFVYSADGTVDHCSKKSPLM
YECEEQMEIDSLLNSFGVSTDSFSQTYGMFERSNNLVEFDMKTELDESGSAACFNNNAPY
MQTGPPESAISDGSSYPEQYQSTSQTCGLVYASASQWQNMSSSGLPLLDCRKSIGEPTSI
ISLGGNGKGHLLPTSEDTLLQKPQSVAPDARLEMTDNVADCYLESAASLDGHSCPLGASA
CHDEAMAAKDLQTAQHGVVTDCTFGIHTSNHAGHSDMLLPITQTTSVQEPGLSLSKDLNS
SCIRGTEVKKVDLTATYNSERHGILRLKSFEQKTPESMGMKTYIYHCGDHSQIVDPQQSI
ILAASKPSHSSVLPVDKSDGKVVSQQKKRKRAAENLLAWHDHIMPGHGSMHRRRTPELDW
ARATKRLVEKVIC

Transcript Sequence

Transcript ID

Zm00001d013247_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:7089014:7093843:1 gene:Zm00001d013247 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GTTCCCACTGCGCAGTCCGCGCTCCTCTTCCCTCACTGGTGCTCGCCTTGGCTGCTCCAC
TCCCAGCTCCAAAACCCTAACCCCGCGAGACATCCAGCAGCTAGGAGCGGGTCCAGGAGC
TCACCGTCGAGCGACCGCTACACTCGACCTCACCGGTTTCTAATGCTGATCAAAGCATGA
GCTTCACTCCTGTTCCAAGGTTCAGGGGGGCAGCCTATTCGCAGTTGTGTCCTCAGTCTA
GCAGTTGTGCTGAACATTTGGTAAATGTGGATGGGGCGAGTGCAAAAGACTTGTCAGTTG
ACCCAAGCACATTTTGTATTCCGCAAGATGCTAATCAGGGATTTTGTAGCCGAGCTTTAC
AGTACACTAGTTCTGTTTCAAAGCAGGGATTTGCAGCTCAAGGTCTTCCTGTAAATGCTG
CAGAGTTTGGTCTGAATAATGATTCTTCTTTGGTGGGAGGATATCAACAATTTGACTACC
TTCTGGGGCCTCCTCAAACTGAAGTGTGTGAAGGAATGTGGATGAAAAATATCAACACAA
GTATCATCCACCGGCGTAGACCTTCTAATGCATCCTGCCTTGATCATACAGAAGAACTAA
CTTCCTATGAAAATGATGAGGGAGCTATCTCATTTGGAAGTAGTTGTAGCACAGGAATTG
CGAGTTATCCATATAGTACTCCTTTGCAAAGAAATAGCCACATTTCGGATACGCGGGATG
GAACTTGGGATGCTCTCGTGCAAATGCAAGAGGCTTTGGAAGCATCCAACAGTGACAATG
GACTCAATGAAGAGTGCAGTGATTTGACTTTCAATCATGCAGAACTTTCAGGTGGGAATG
CCGTAAAGCATAAAGTTGTTTGGGACAATGGCTCTTTAAACAGTCCATCTTTCACCTCAA
ATTTATTGTCTTTCCCTGGTGATACTGAGACCACCCTCACAAGTGCCTCCACTGTTTATT
GTACCTTTCAGAACTTTGCTGATCTCCAACATAAGATGAACAACAATGAGCAAAACAAAT
TATCTAGTGAGGTTGAACTGCCTCGTCAGAAAGTGCCCATGACAAACCATGTTAATGGAA
GTGGAGGTGAAATGCATTCTGCTGAATGGGGAACGAACCCTGGTCTCATAGAATCTTCTG
GCTTTATGCCAAGCAATGAAGACAGACAAAACGATATATCACATCAACCGTCAAGTTCAT
TTGTATACAGTGCAGATGGAACTGTGGATCATTGCTCAAAAAAGTCACCCCTCATGTATG
AATGTGAAGAGCAGATGGAAATTGATTCACTTTTAAATTCATTCGGTGTATCAACTGATT
CATTTTCACAAACATATGGAATGTTTGAGCGAAGCAACAATTTGGTTGAGTTTGATATGA
AGACCGAATTAGATGAAAGTGGTTCTGCTGCATGCTTTAATAATAATGCCCCATATATGC
AAACTGGACCACCTGAGTCAGCTATATCTGATGGATCTTCTTATCCTGAACAGTATCAGT
CTACTTCTCAAACATGTGGCTTAGTTTATGCTTCAGCATCTCAGTGGCAAAATATGTCAA
GTTCTGGATTGCCTTTACTGGATTGTCGCAAAAGTATTGGTGAGCCCACTTCAATAATTA
GCCTGGGGGGAAATGGTAAAGGACACTTGCTGCCCACAAGTGAAGATACTTTATTACAGA
AACCACAGAGTGTTGCTCCTGATGCTAGATTGGAAATGACCGACAATGTTGCTGATTGCT
ATCTGGAGTCTGCTGCTAGCTTGGATGGCCATTCTTGTCCACTAGGAGCTTCCGCATGTC
ATGATGAAGCAATGGCAGCCAAAGATTTGCAGACAGCACAACATGGCGTAGTCACAGATT
GCACCTTTGGAATACATACTTCAAACCACGCTGGACATTCAGACATGCTGCTACCCATTA
CACAGACTACTTCTGTTCAAGAGCCTGGCTTGAGTTTGTCCAAGGATCTGAACTCATCAT
GTATTCGAGGAACAGAGGTTAAGAAAGTAGATTTAACAGCAACATACAATTCTGAACGCC
ATGGCATCCTCCGCCTCAAGTCTTTTGAACAAAAAACTCCTGAGAGTATGGGTATGAAAA
CATACATATATCATTGTGGTGATCATAGCCAGATTGTTGATCCTCAGCAGAGTATCATAC
TCGCTGCAAGCAAACCTTCACACTCAAGTGTTTTGCCAGTTGACAAATCTGATGGCAAGG
TCGTTTCACAGCAAAAAAAGCGGAAAAGGGCTGCAGAAAACCTTTTAGCGTGGCATGATC
ACATCATGCCCGGGCATGGGAGCATGCATCGTAGAAGAACACCTGAATTGGATTGGGCTC
GTGCTACCAAAAGATTGGTTGAGAAGGTTATATGCTAGACTTCTTGCCGCAAATGTTACT
AATTCCATTGAGGCCATTGTATACCACATTTCTAAATCCGCACTCAGTGACGCATGTGAC
ACTGCTCTATCTGTTGTGAATGACACGCTACCGAACCAGAGCAGCACTTCTGGTAAGGAA
GGCTCAAGAATCCTATCAGAAGTTCTGGAAACATATGAGTCGAGGCTTGGCAAGCTGGAA
ATTTCCTTGTTAAGCTCTGAAAAGGCGACGACATTGCATGATCTGGCATCAGAGCTACAG
GACTTGGGGCGGTGGTATATTCTCTATCATCTTGCAAAGTGGCATGGGTACACTAACAAT
TCTGAGCTCGACCCTGGCGCAGCTACTGTCAAGAAACATGAAGGAGCTGCTGCAGCACCA
GTAAACTCGCTGAGTGATATCAAGTGTCGCTTACTGAACTAGGGCAGCTCAGCGACTACT
AACAAGTCAACCCAACCCGTGTTATGCTGAACTGCGTATAGGAATATAGAACCATAGAAC
ATACTGCTGCTGTGGATAGGCCTGGCGCGGTGGTGAGAAGCCTTCTACTGAGCCAAAGGT
CTTGGGTTTAACACAACCTTTCTGCAAAAATGTAGAGATAAAGGCTGACTCTGTTATTTC
TTCTCTAGAACCTCACTCATGTGGAAGTCGTCATCACTGGGTCCGTCTTTAGAACGTACT
GCCGCCCCGTTGCCTTGTTGGCTTTTTTTTTGTTTGTAAATGAGAGGCAACCTCTCCGTT
TAGACTTAGGAATATGGTGATGTGACTTACCATGTGCTATGTGATCATTAGATGTAGGAG
CACGGGAAGATCATTTTGCAAGTATAGCTAACGCTAGCTGTCTGGAACTTCCAGATGTTA
CTGTTCTTTTGGCCAGTTTGCTAGATGGTTATG