Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013223_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:6720508:6727815:-1 gene:Zm00001d013223 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence	ATGCAGGCCGCCGCCGCCGTCGTCGTCCGCCACCCGCGCCTATTCCCGCCGTCCCCGGGC CGCTCCGCGCAGCACCGGCGCGCACCCAGCACCGTGCGCATGGCGCTGCGCGAGGACGGG CCCTCGGTGGCCATCGTGGGCGCCACGGGCGCGGTGGGCCAGGAGTTCCTCCGCGTCATC ACGGACCGGGACTTCCCCTACCGCGGCCTCCGCCTCCTCGCCAGCGAGCGGTCCGCGGGG AAGCGCCTCGCCTTTGAGGACCGCGAGTACACCGTCCAGGACCTCGCGGCCCCTGGGGCG TTCGACGGCGTCGACATCGCGCTATTCAGCGCCGGCGGGAGCGTCAGCCGGAAGTATGGG CCCGCGGCCGTCGCCAGCGGCGCCGTAGTTGTCGACAACAGCTCCGCGTTCCGGATGGAG CCCGAGGTGCCGCTCGTCATCCCCGAGGTCAACCCCGAGGCCATGGCGAACGTCCGCCTC GGGCAGGGGGCGATTGTGGCAAATCCGAATTGCTCGACCATCATCTGCCTCATGGCTGCC ACGCCGCTCCATCGCCACGCTAAGGTGTTAAGGATGGTTGTCAGCACATACCAAGCAGCA AGTGGTGCGGGTGCTGCGGCAATGGAAGAACTCAAGCTGCAGACTCAGGAGGTCTTGGAA GGGAAGGCGCCAACATGCAACATTTTCAAACAGCAGTATGCTTTTAATATATTCTCACAC AATGCACCAGTTCTTGAGAATGGGTATAACGAGGAGGAAATGAAAATGGTGAAGGAGACC AGGAAAATTTGGAATGACAAGGAGGTGAAAGTAACTGCGACTTGCATACGGGTTCCTGTG ATGCGCGCACATGCTGAAAGTGTCAATCTACAGTTTGAAAAGCCACTTGATGAGGATACT GCAAGAGAAATTTTGAGAGCAGCTCCTGGTGTTACCATTATTGATGACCGAGCTTCCAAT CGCTTTCCTACACCTCTGGAGGTATCAGACAAAGATGACGTAGCAGTGGGTAGGATTCGT CAGGACTTGTCCCTGGATGGTAACCGAGGGTTGGACATATTTGTGTGTGGTGATCAGATA CGTAAAGGCGCCGCACTCAATGCCGTTCAGATTGCTGAAATGCTGCTGAAGTGA

Peptide Sequence

PEP ID	Zm00001d013223_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:6720508:6727815:-1 gene:Zm00001d013223 transcript:Zm00001d013223_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence	MQAAAAVVVRHPRLFPPSPGRSAQHRRAPSTVRMALREDGPSVAIVGATGAVGQEFLRVI TDRDFPYRGLRLLASERSAGKRLAFEDREYTVQDLAAPGAFDGVDIALFSAGGSVSRKYG PAAVASGAVVVDNSSAFRMEPEVPLVIPEVNPEAMANVRLGQGAIVANPNCSTIICLMAA TPLHRHAKVLRMVVSTYQAASGAGAAAMEELKLQTQEVLEGKAPTCNIFKQQYAFNIFSH NAPVLENGYNEEEMKMVKETRKIWNDKEVKVTATCIRVPVMRAHAESVNLQFEKPLDEDT AREILRAAPGVTIIDDRASNRFPTPLEVSDKDDVAVGRIRQDLSLDGNRGLDIFVCGDQI RKGAALNAVQIAEMLLK

Transcript Sequence

Transcript ID	Zm00001d013223_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:6720508:6727815:-1 gene:Zm00001d013223 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence	ACTCCACGCCCTAAAACCCTAATCGACAATTCCCGTTGTCATTCGTCAGCGCGCCCCCTC AACCCCGTCTCAGCCTAGCGCGCCGCCACAATGCAGGCCGCCGCCGCCGTCGTCGTCCGC CACCCGCGCCTATTCCCGCCGTCCCCGGGCCGCTCCGCGCAGCACCGGCGCGCACCCAGC ACCGTGCGCATGGCGCTGCGCGAGGACGGGCCCTCGGTGGCCATCGTGGGCGCCACGGGC GCGGTGGGCCAGGAGTTCCTCCGCGTCATCACGGACCGGGACTTCCCCTACCGCGGCCTC CGCCTCCTCGCCAGCGAGCGGTCCGCGGGGAAGCGCCTCGCCTTTGAGGACCGCGAGTAC ACCGTCCAGGACCTCGCGGCCCCTGGGGCGTTCGACGGCGTCGACATCGCGCTATTCAGC GCCGGCGGGAGCGTCAGCCGGAAGTATGGGCCCGCGGCCGTCGCCAGCGGCGCCGTAGTT GTCGACAACAGCTCCGCGTTCCGGATGGAGCCCGAGGTGCCGCTCGTCATCCCCGAGGTC AACCCCGAGGCCATGGCGAACGTCCGCCTCGGGCAGGGGGCGATTGTGGCAAATCCGAAT TGCTCGACCATCATCTGCCTCATGGCTGCCACGCCGCTCCATCGCCACGCTAAGGTGTTA AGGATGGTTGTCAGCACATACCAAGCAGCAAGTGGTGCGGGTGCTGCGGCAATGGAAGAA CTCAAGCTGCAGACTCAGGAGGTCTTGGAAGGGAAGGCGCCAACATGCAACATTTTCAAA CAGCAGTATGCTTTTAATATATTCTCACACAATGCACCAGTTCTTGAGAATGGGTATAAC GAGGAGGAAATGAAAATGGTGAAGGAGACCAGGAAAATTTGGAATGACAAGGAGGTGAAA GTAACTGCGACTTGCATACGGGTTCCTGTGATGCGCGCACATGCTGAAAGTGTCAATCTA CAGTTTGAAAAGCCACTTGATGAGGATACTGCAAGAGAAATTTTGAGAGCAGCTCCTGGT GTTACCATTATTGATGACCGAGCTTCCAATCGCTTTCCTACACCTCTGGAGGTATCAGAC AAAGATGACGTAGCAGTGGGTAGGATTCGTCAGGACTTGTCCCTGGATGGTAACCGAGGG TTGGACATATTTGTGTGTGGTGATCAGATACGTAAAGGCGCCGCACTCAATGCCGTTCAG ATTGCTGAAATGCTGCTGAAGTGAATGTGACCTAACCCTCTTGTCCCTCCCTCCCTGTCC CTAATTGCTCTGATCAAATGCTGGACTGTACTCTGATTAGTTTGTCCTCAATTTTGGTCG CCTGTTCTGTATTCTGCCGTGCTAGTGCAATAATTGTGTTATGGGCTTGAGTTATCTGCT GTACGCATAAGTGGGCTCCTAAACTGGGAAATAATGGGCCGTCCTTATTCAGCATTCCGG TTTATATCTTGTTCAGATTCGTCTAACAGCCCAGCAGTGCCGGGTTCTGTGGATCACAGG GCCCAAAGTGTCCTACGGGATTTACACTTTCATGTGCAAGAATAGGGTCTGATTGTAACC TGACCCAGAAGGTACTGGGAAGTTCTCTTGAGCAGGAAGCATCTGTTGCAGGTCTGAAAG AAACTGTGCAACGATAAGACATTAGAGTTGAGAGGAAAGAGGGCGGGTTAGCCCGTAAAT TTCTGTGATCGCATGATGTGTTGTTTGTCAGTATATGTAATCCTTTGTTTCAATGGATTT AGTTGTTTTGGTGGTCTTATTTACCGTTTTGCACTGTAGGCTTCACTTTGCAGGGTGGAG TTTGAATATAGAGATTATGATGGATAAGTGTAAGCTGTTAGAAGTAGTCTAAGATAGATA CATTTGACACTTGGTAGT