Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013220_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:6711124:6713585:1 gene:Zm00001d013220 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable protein phosphatase 2C 48
Sequence

ATGTTGCGAGCGCTGGCGGCGAGGTGCTGCGGCCACTGGCCGCCGGGCGCCGCGGCGGCG
GACGGGATGCTGTGGCAGGCGGAGCTGCGGCCGCACGCGGCGGGGGAGTTCTCGATGGCC
GCGGCGCAGGCCAACCTGGCCATGGAGGACCAGGCGCAGGTGCTGGCGTCCCCGGCCGCC
ACGCTCGTCGGCGTCTACGACGGCCACGGCGGGGCCGACGCATCCCGGTTCCTTCGCTCC
CGGCTCTTCCTGCATGTCCAACGCGTCGTGCAGGAGCAGGGGGGCATGAGCGCCGAGGCG
ATTCGGAGCGCGTTCGGCGCGGCCGAGGAGGAGTTCCATAGGCAGGTGAGGCAGGAGTGG
AGGAGCCGGCCGCGGCTCGCTGCCGTGGGCTCCTGCTGCCTGCTCGGGGCCATCTCCGGG
GACACGCTGTACGTGGCCAACGCCGGCGATTCCCGCGCCGTGCTCGGCCGTCGAGTGCCC
GGCGGCGGGGCGGCCGTCGCCGAGCGGCTCTCCGCCGAGCACAACGCGGCGTGCGAGGAG
GTGCGGCGCGAGCTCGCCGCGCTCAACCCCGACGACGCGCAGATCGTTGTGCACGCCAGG
GGAGCCTGGAGGGTCAAGGGGATAATTCAGGTGTCGAGATCCATTGGCGATTTTTATCTC
AAGAAACCGGAGTATAGCCTGGACCCCTTGTTCCGGCAAGTTGGGGCCCCTATTGCGCTG
AAGAGGCCAGCTCTCAGCGCTGAACCATCAGTTCAAGTACGCAAGCTGAAACCAAACGAC
CTGTTCCTGATATTTGCTTCAGATGGCCTTTGGGAGCACCTCAGCGACGATGCTGCGGTG
CAGATTGTCTTCAAGAATCCGAGAACTGGGATAGCCAGCAGACTGGTGAAGGCTGCCTTG
AAGGAAGCGACCAGGAAGAGGGAGGTCAGGTACCGTGATCTGAGGACGATCGAGAGAGGG
GTGAGGCGGCATTTCCACGACGACATCAGCGTCGTCGTGGTCTACCTCGATGGCCACCGC
GAGCGCCGCCACACCAGGGTCGTTGACTCGAGCAGCAACTGCACCAGTGCGCCCGTCGAC
ATCCACTCCTCCAACTCCCGCTAG

Peptide Sequence

PEP ID

Zm00001d013220_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:6711124:6713585:1 gene:Zm00001d013220 transcript:Zm00001d013220_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable protein phosphatase 2C 48
Sequence

MLRALAARCCGHWPPGAAAADGMLWQAELRPHAAGEFSMAAAQANLAMEDQAQVLASPAA
TLVGVYDGHGGADASRFLRSRLFLHVQRVVQEQGGMSAEAIRSAFGAAEEEFHRQVRQEW
RSRPRLAAVGSCCLLGAISGDTLYVANAGDSRAVLGRRVPGGGAAVAERLSAEHNAACEE
VRRELAALNPDDAQIVVHARGAWRVKGIIQVSRSIGDFYLKKPEYSLDPLFRQVGAPIAL
KRPALSAEPSVQVRKLKPNDLFLIFASDGLWEHLSDDAAVQIVFKNPRTGIASRLVKAAL
KEATRKREVRYRDLRTIERGVRRHFHDDISVVVVYLDGHRERRHTRVVDSSSNCTSAPVD
IHSSNSR

Transcript Sequence

Transcript ID

Zm00001d013220_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:6711124:6713585:1 gene:Zm00001d013220 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable protein phosphatase 2C 48
Sequence

TGAGCAGCAGAGATGTTGCGAGCGCTGGCGGCGAGGTGCTGCGGCCACTGGCCGCCGGGC
GCCGCGGCGGCGGACGGGATGCTGTGGCAGGCGGAGCTGCGGCCGCACGCGGCGGGGGAG
TTCTCGATGGCCGCGGCGCAGGCCAACCTGGCCATGGAGGACCAGGCGCAGGTGCTGGCG
TCCCCGGCCGCCACGCTCGTCGGCGTCTACGACGGCCACGGCGGGGCCGACGCATCCCGG
TTCCTTCGCTCCCGGCTCTTCCTGCATGTCCAACGCGTCGTGCAGGAGCAGGGGGGCATG
AGCGCCGAGGCGATTCGGAGCGCGTTCGGCGCGGCCGAGGAGGAGTTCCATAGGCAGGTG
AGGCAGGAGTGGAGGAGCCGGCCGCGGCTCGCTGCCGTGGGCTCCTGCTGCCTGCTCGGG
GCCATCTCCGGGGACACGCTGTACGTGGCCAACGCCGGCGATTCCCGCGCCGTGCTCGGC
CGTCGAGTGCCCGGCGGCGGGGCGGCCGTCGCCGAGCGGCTCTCCGCCGAGCACAACGCG
GCGTGCGAGGAGGTGCGGCGCGAGCTCGCCGCGCTCAACCCCGACGACGCGCAGATCGTT
GTGCACGCCAGGGGAGCCTGGAGGGTCAAGGGGATAATTCAGGTGTCGAGATCCATTGGC
GATTTTTATCTCAAGAAACCGGAGTATAGCCTGGACCCCTTGTTCCGGCAAGTTGGGGCC
CCTATTGCGCTGAAGAGGCCAGCTCTCAGCGCTGAACCATCAGTTCAAGTACGCAAGCTG
AAACCAAACGACCTGTTCCTGATATTTGCTTCAGATGGCCTTTGGGAGCACCTCAGCGAC
GATGCTGCGGTGCAGATTGTCTTCAAGAATCCGAGAACTGGGATAGCCAGCAGACTGGTG
AAGGCTGCCTTGAAGGAAGCGACCAGGAAGAGGGAGGTCAGGTACCGTGATCTGAGGACG
ATCGAGAGAGGGGTGAGGCGGCATTTCCACGACGACATCAGCGTCGTCGTGGTCTACCTC
GATGGCCACCGCGAGCGCCGCCACACCAGGGTCGTTGACTCGAGCAGCAACTGCACCAGT
GCGCCCGTCGACATCCACTCCTCCAACTCCCGCTAGTTTCCGGAGCCCCTTGCAACGCGA
GCTGAACTCTGGGTGGGAGGTGAGGTGGGTGCAGCCGTAGCCATCGGAATCGGAACAAGT
CGATATGTACATAGGTAGGAGTGGGTGCGTGGCATCTTGATGCCGGAGAAGATCATTTGG
TCTCGAAACTACTTAGCACAAGTGGTTAATGACTGCATTTTTCTTGTTTCTTTTTGTCTG
AAACCAGCAGCAAGCCCGTCCATTGGATCGGACTTATTTTTAAGGTAAGAAATAGTTGAT
GACGAACTGGAGGTTGGTTAATGGAGACCAAAGAATATATGCTCTGCTCAGTGCTCAGGA
TCATAGAATTTAGGTTCCGGCCTGAG