Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013116_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:5:4888333:4898094:-1 gene:Zm00001d013116 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cullin-4
Sequence

ATGTCTCAGTCCTACGCCGCCGCCGCCTCGAAGCGCCCCTTCTCGTCCCCCACCACATCT
CCGTCCCCGACGTCATCCCCTGCGACGCCGCTTATGAAGAAGGCCAAGCATCCCGCCGCC
GCCTCCTCCTCTTCCGTGGGGACCGTAGAGAAGAACGGCATCCAGCTTGATACCGTTGCC
GCCGCCATGGGTGGGGGCCGAACGAATGGCGAGGAGGATGCGGACATGGTGCTCGTCAAC
CAGGACAAGCTCCCCGCGCCCAGCGTGCCGGCCTCTGCTGGCGTTGCCGCCAACCTCTTT
CGAAAGAAGGCCACGCTCCCGCAGCCGTCGACCTCCGCCCGCAAGCCGCTCCGCATCAAA
ATAGGTCAACCAAAACTGCCAAAAAACTTCGAAGAGGATACATGGTCGATTTTGAAGGAT
GCTATCACAGCTATTTTTCTCAAGCAGAAACTTTCTTGTGATGTTGAGAAACTCTATCAG
GCTGCTGGTGATCTTTGTTTACACAAGCTAGGGGCAAACCTATACGACCGAATCAAGAAA
GAATGTGGAATACATATAGCTGAAAAAATATCAGCATTAGTGGGTCAAAGCCCAGATCTG
GTTGTATTCTTGTCTCTGGTCCAAAGAACATGGCAAGATTTTTGTGATCAGATGTTGATT
ATTCGTGGTATTGCTTTACTTCTTGATGTAAAATATGTCAAGAATGTGGCAAATATCTGT
TCAGTGTGGGATATGGGGCTGCAACTGTTCCGCAAGCATCTATCACTATCCACGGAGATT
GAACACAAAACTGTAACTGGCCTTCTCAGATTGATCGAGAGTGAGAGGCTTGGTGAAGCA
ATAGATAGGACATTACTTAGTCATCTTCTGAAGATGCTTACTGCTCTTGGAATGTATTCT
GAGAGTTTTGAAAAACCCTTTCTTGAATGTACTTCTGAATTTTATGCTACGGAAGGTGTT
AGATATATGCAACAATCTGATATTCCAGATTACCTGAAGCATGTGGAGTCGAGGTTGCAA
GAAGAACACGAAAGGTGTATTCTATATTTGGAAGCTAACACGAGGAAGCCACTGATTGCA
ACTACTGAAAAGCAATTGCTAGAACGTCATACATCTGCCATTATTGAGAAGGGGTTCACT
ATGCTCATGGATGCCAATCGTATAAATGACCTCTCGAGGATGTACAACCTTTTCCAGAGG
GTGAATGCTGTTGAGCTGCTAAAACTAGCGCTTAGTTCATATATCCGGGCTACAGGCCAG
GGCATTATTATGGATGAAGAAAAGGACAGAGAATTGGTTCCATTTCTTCTTGATTTTAAG
GCATCCCTCGACAAAATATTGGAAGAAAGTTTTGCCAAGAACGAGGCTTTCTCCAATACC
ATAAAAGATTCATTTGAGCACCTTATCAATCTACGACAGAACCGACCTGCGGAATTGATT
GCAAAGTTTCTTGATGAGAAACTTCGAGCTGGCAATAAAGGGACATCGGAAGAAGAGCTG
GAGGGTATACTTGATAAAGTTCTGGTCCTGTTTCGGTTTATACAAGGTAAAGATGTATTT
GAGGCATTCTACAAGAAGGATCTAGCTAAGAGGTTGCTGCTTGGGAAGAGTGCATCAATA
GATGCTGAAAAATCGATGATCACAAAACTCAAAACTGAGTGTGGAAGTCAGTTTACCAAC
AAGCTGGAGGGAATGTTCAAGGACATTGAATTATCCAAAGAAATAAATGATTCATTCAGA
CAATCATCTCAAGCTAGGACAAAGCTTCCCTCTGGCATTGAAATGAGTGTCCATGTGCTT
ACAACAGGCTATTGGCCTACATATCCGCCAATGGACGTGAAACTCCCACACGAACTGAAT
GTGTATCAGGATATATTTAAAGAGTTCTATTTAAGCAAGTACAGTGGAAGGCGTTTAATG
TGGCAGAATTCTTTGGGACACTGTGTCTTGAAAGCAGACTTTCCCAAAGGCAAAAAGGAA
CTTGCAGTATCATTGTTCCAGAGCGTGGTTTTGATGTTGTTCAATGACGCACAAAAGTTA
AGCTTCATTGACATCAAAGATTCCACTGGTATCGAGGATAAAGAATTGAGACGAACATTG
CAATCTCTTGCATGTGGTAAAGTTCGGGTTCTCCAAAAGATACCAAAAGGGAGAGATGTA
GAAGATAAGGATGAATTTGTATTCAATGAAGATTTTAGTGCTCCTCTCTACCGCATAAAG
GTAAATGCAATTCAAATGAAAGAGACGGTAGAAGAAAACACGAGCACCACTGAGAGAGTG
TTCCAGGATCGGCAGTATCAGGTTGACGCGGCCATAGTTCGAATAATGAAGACGCGGAAG
GTCCTCAGCCACACCCTTCTAATAACTGAGCTTTACCAGCAGCTCAAGTTCCCTGTTAAG
CCAGCTGATATCAAGAAAAGAATAGAGAGCTTGATCGACCGGGAGTACCTGGAGCGCGAC
AGGAGTAACCCCCAGATCTACAACTATCTGGCTTGA

Peptide Sequence

PEP ID

Zm00001d013116_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:5:4888333:4898094:-1 gene:Zm00001d013116 transcript:Zm00001d013116_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cullin-4
Sequence

MSQSYAAAASKRPFSSPTTSPSPTSSPATPLMKKAKHPAAASSSSVGTVEKNGIQLDTVA
AAMGGGRTNGEEDADMVLVNQDKLPAPSVPASAGVAANLFRKKATLPQPSTSARKPLRIK
IGQPKLPKNFEEDTWSILKDAITAIFLKQKLSCDVEKLYQAAGDLCLHKLGANLYDRIKK
ECGIHIAEKISALVGQSPDLVVFLSLVQRTWQDFCDQMLIIRGIALLLDVKYVKNVANIC
SVWDMGLQLFRKHLSLSTEIEHKTVTGLLRLIESERLGEAIDRTLLSHLLKMLTALGMYS
ESFEKPFLECTSEFYATEGVRYMQQSDIPDYLKHVESRLQEEHERCILYLEANTRKPLIA
TTEKQLLERHTSAIIEKGFTMLMDANRINDLSRMYNLFQRVNAVELLKLALSSYIRATGQ
GIIMDEEKDRELVPFLLDFKASLDKILEESFAKNEAFSNTIKDSFEHLINLRQNRPAELI
AKFLDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASI
DAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINDSFRQSSQARTKLPSGIEMSVHVL
TTGYWPTYPPMDVKLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKE
LAVSLFQSVVLMLFNDAQKLSFIDIKDSTGIEDKELRRTLQSLACGKVRVLQKIPKGRDV
EDKDEFVFNEDFSAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRK
VLSHTLLITELYQQLKFPVKPADIKKRIESLIDREYLERDRSNPQIYNYLA

Transcript Sequence

Transcript ID

Zm00001d013116_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:4888333:4898094:-1 gene:Zm00001d013116 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cullin-4
Sequence

CGCCCCAAGCCCCCAACCCGATCTCTCTCATCAGCTCGCTCTTTCCTGTCCCCTCTCCGC
CACCTCACCGCCGGCTCGCTCAAAAATCCTCGCGCCGGACGCCGGCCCTGCCTCCGCCTC
CGCCTCCGCTGCGCCATGCCCGTCGGCGCCTGATTCATGTCTCAGTCCTACGCCGCCGCC
GCCTCGAAGCGCCCCTTCTCGTCCCCCACCACATCTCCGTCCCCGACGTCATCCCCTGCG
ACGCCGCTTATGAAGAAGGCCAAGCATCCCGCCGCCGCCTCCTCCTCTTCCGTGGGGACC
GTAGAGAAGAACGGCATCCAGCTTGATACCGTTGCCGCCGCCATGGGTGGGGGCCGAACG
AATGGCGAGGAGGATGCGGACATGGTGCTCGTCAACCAGGACAAGCTCCCCGCGCCCAGC
GTGCCGGCCTCTGCTGGCGTTGCCGCCAACCTCTTTCGAAAGAAGGCCACGCTCCCGCAG
CCGTCGACCTCCGCCCGCAAGCCGCTCCGCATCAAAATAGGTCAACCAAAACTGCCAAAA
AACTTCGAAGAGGATACATGGTCGATTTTGAAGGATGCTATCACAGCTATTTTTCTCAAG
CAGAAACTTTCTTGTGATGTTGAGAAACTCTATCAGGCTGCTGGTGATCTTTGTTTACAC
AAGCTAGGGGCAAACCTATACGACCGAATCAAGAAAGAATGTGGAATACATATAGCTGAA
AAAATATCAGCATTAGTGGGTCAAAGCCCAGATCTGGTTGTATTCTTGTCTCTGGTCCAA
AGAACATGGCAAGATTTTTGTGATCAGATGTTGATTATTCGTGGTATTGCTTTACTTCTT
GATGTAAAATATGTCAAGAATGTGGCAAATATCTGTTCAGTGTGGGATATGGGGCTGCAA
CTGTTCCGCAAGCATCTATCACTATCCACGGAGATTGAACACAAAACTGTAACTGGCCTT
CTCAGATTGATCGAGAGTGAGAGGCTTGGTGAAGCAATAGATAGGACATTACTTAGTCAT
CTTCTGAAGATGCTTACTGCTCTTGGAATGTATTCTGAGAGTTTTGAAAAACCCTTTCTT
GAATGTACTTCTGAATTTTATGCTACGGAAGGTGTTAGATATATGCAACAATCTGATATT
CCAGATTACCTGAAGCATGTGGAGTCGAGGTTGCAAGAAGAACACGAAAGGTGTATTCTA
TATTTGGAAGCTAACACGAGGAAGCCACTGATTGCAACTACTGAAAAGCAATTGCTAGAA
CGTCATACATCTGCCATTATTGAGAAGGGGTTCACTATGCTCATGGATGCCAATCGTATA
AATGACCTCTCGAGGATGTACAACCTTTTCCAGAGGGTGAATGCTGTTGAGCTGCTAAAA
CTAGCGCTTAGTTCATATATCCGGGCTACAGGCCAGGGCATTATTATGGATGAAGAAAAG
GACAGAGAATTGGTTCCATTTCTTCTTGATTTTAAGGCATCCCTCGACAAAATATTGGAA
GAAAGTTTTGCCAAGAACGAGGCTTTCTCCAATACCATAAAAGATTCATTTGAGCACCTT
ATCAATCTACGACAGAACCGACCTGCGGAATTGATTGCAAAGTTTCTTGATGAGAAACTT
CGAGCTGGCAATAAAGGGACATCGGAAGAAGAGCTGGAGGGTATACTTGATAAAGTTCTG
GTCCTGTTTCGGTTTATACAAGGTAAAGATGTATTTGAGGCATTCTACAAGAAGGATCTA
GCTAAGAGGTTGCTGCTTGGGAAGAGTGCATCAATAGATGCTGAAAAATCGATGATCACA
AAACTCAAAACTGAGTGTGGAAGTCAGTTTACCAACAAGCTGGAGGGAATGTTCAAGGAC
ATTGAATTATCCAAAGAAATAAATGATTCATTCAGACAATCATCTCAAGCTAGGACAAAG
CTTCCCTCTGGCATTGAAATGAGTGTCCATGTGCTTACAACAGGCTATTGGCCTACATAT
CCGCCAATGGACGTGAAACTCCCACACGAACTGAATGTGTATCAGGATATATTTAAAGAG
TTCTATTTAAGCAAGTACAGTGGAAGGCGTTTAATGTGGCAGAATTCTTTGGGACACTGT
GTCTTGAAAGCAGACTTTCCCAAAGGCAAAAAGGAACTTGCAGTATCATTGTTCCAGAGC
GTGGTTTTGATGTTGTTCAATGACGCACAAAAGTTAAGCTTCATTGACATCAAAGATTCC
ACTGGTATCGAGGATAAAGAATTGAGACGAACATTGCAATCTCTTGCATGTGGTAAAGTT
CGGGTTCTCCAAAAGATACCAAAAGGGAGAGATGTAGAAGATAAGGATGAATTTGTATTC
AATGAAGATTTTAGTGCTCCTCTCTACCGCATAAAGGTAAATGCAATTCAAATGAAAGAG
ACGGTAGAAGAAAACACGAGCACCACTGAGAGAGTGTTCCAGGATCGGCAGTATCAGGTT
GACGCGGCCATAGTTCGAATAATGAAGACGCGGAAGGTCCTCAGCCACACCCTTCTAATA
ACTGAGCTTTACCAGCAGCTCAAGTTCCCTGTTAAGCCAGCTGATATCAAGAAAAGAATA
GAGAGCTTGATCGACCGGGAGTACCTGGAGCGCGACAGGAGTAACCCCCAGATCTACAAC
TATCTGGCTTGACAACGTTTTGGTGGATCGTTCCCATTTCATTACTATCAGAAAAAGGCA
CTGTAAATTAATTTATTTTCCGGTTTCTTGTTCTTTCATGCTTTTCTTCTCTGGGAGGAA
GTTGTAGTTGTAGCTGCTGCAACGTGTTTATATAGAACAATTTTTTCGGCATCAGTATAA
AAT