Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d013107_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:5:4768254:4771200:1 gene:Zm00001d013107 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase RHF2A
Sequence

ATGGACGAGAAGGCGACGATGGAGAGCAAGCTGTCCTCGGCGGCGGCCTTCGTGGAGGGG
GGCGTGCAGGACGCCTGCGACGACGCCTGCAGCATCTGCCTCGACGCCTTCTGCGACAGC
AACCCCTCCACGATGACCAAGTGCAAGCATGACTACCATCTTCAGTGCATTCTTGAATGG
TGCCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCATATCAGCATGAAAGATCCTATG
AGCCAAGAGCTACTAGAGGCTGTTGAACAAGAGAGGAACATCCGAGCTAATCCTTCACGT
AATACTGCTGTTTTCCACCATCAAATGCTGGGTGATTTTGAGATCCCTGTAGGTGCAGAT
GATGCAGAACTTGAAGAACGCATTATTCAGCACTTGGCTGCCGCAGCTGCAGTGCGTAGG
TCACACCGTCATCATAATAGAAGAGATGGGCACCAGAGCAGATCAGAAGCAAGTAGCCAC
CCACAGTTTCTGGTGCTCTCAGCAGACGAGCGCACAATCTCAGGTCAAGAAGGGGACTAC
GAACAAGCATCTGCTGTAGCTTCTGGCCGCCCTTTACGTACACTTGTTGAACAAGAACGC
ACTCGAGGGTTAGCGGATGCTTCCAGTCCATCTCTCCGTTGTTCTACTCCTGCTGATAGT
ACTGGTAGATCAAACAATAGGATTTCTGGGATCGAATCTACACCTGTGGATCAAGACGGA
ACTGGACCATCCGCTTTACAATCAATGGTACAGGGATTTCATAATCAAAGTGCAAGTGGA
TGGAGGGAGAGGTGGTTTTCTCGGAGCAACTCTTTACTGGATCTTGGTTCTGAGGTGAGG
AGGGAGGTCAACGCGGGGATTGCTGCGGTGTCTCGCATGATGGAATGGCACGATGCAAGG
GACGGGACGGGAGCGGGGCCTTCTCCTACCTCTGCATCAAGATCTGGTTCTCAGTGA

Peptide Sequence

PEP ID

Zm00001d013107_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:5:4768254:4771200:1 gene:Zm00001d013107 transcript:Zm00001d013107_T014 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase RHF2A
Sequence

MDEKATMESKLSSAAAFVEGGVQDACDDACSICLDAFCDSNPSTMTKCKHDYHLQCILEW
CQRSSQCPMCWQHISMKDPMSQELLEAVEQERNIRANPSRNTAVFHHQMLGDFEIPVGAD
DAELEERIIQHLAAAAAVRRSHRHHNRRDGHQSRSEASSHPQFLVLSADERTISGQEGDY
EQASAVASGRPLRTLVEQERTRGLADASSPSLRCSTPADSTGRSNNRISGIESTPVDQDG
TGPSALQSMVQGFHNQSASGWRERWFSRSNSLLDLGSEVRREVNAGIAAVSRMMEWHDAR
DGTGAGPSPTSASRSGSQ

Transcript Sequence

Transcript ID

Zm00001d013107_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:4768254:4771200:1 gene:Zm00001d013107 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase RHF2A
Sequence

AAGCGGAAGGATTTGGATTGAATGGCACGCGTTGTTTCCAGTCGACGCCCTCTTGGCTTG
CCTTTGGCTGTAGGAAATCGCACGGAGGTGAGGATACACGGGTGCGGAACGAGAGCTAGG
CGAACCTGTCTGGTACCTCGCGGCGGAGATGGACGAGAAGGCGACGATGGAGAGCAAGCT
GTCCTCGGCGGCGGCCTTCGTGGAGGGGGGCGTGCAGGACGCCTGCGACGACGCCTGCAG
CATCTGCCTCGACGCCTTCTGCGACAGCAACCCCTCCACGATGACCAAGTGCAAGCATGA
CTACCATCTTCAGTGCATTCTTGAATGGTGCCAGAGAAGCTCCCAGTGCCCCATGTGTTG
GCAGCATATCAGCATGAAAGATCCTATGAGCCAAGAGCTACTAGAGGCTGTTGAACAAGA
GAGGAACATCCGAGCTAATCCTTCACGTAATACTGCTGTTTTCCACCATCAAATGCTGGG
TGATTTTGAGATCCCTGTAGGTGCAGATGATGCAGAACTTGAAGAACGCATTATTCAGCA
CTTGGCTGCCGCAGCTGCAGTGCGTAGGTCACACCGTCATCATAATAGAAGAGATGGGCA
CCAGAGCAGATCAGAAGCAAGTAGCCACCCACAGTTTCTGGTGCTCTCAGCAGACGAGCG
CACAATCTCAGGTCAAGAAGGGGACTACGAACAAGCATCTGCTGTAGCTTCTGGCCGCCC
TTTACGTACACTTGTTGAACAAGAACGCACTCGAGGGTTAGCGGATGCTTCCAGTCCATC
TCTCCGTTGTTCTACTCCTGCTGATAGTACTGGTAGATCAAACAATAGGATTTCTGGGAT
CGAATCTACACCTGTGGATCAAGACGGAACTGGACCATCCGCTTTACAATCAATGGTACA
GGGATTTCATAATCAAAGTGCAAGTGGATGGAGGGAGAGGTGGTTTTCTCGGAGCAACTC
TTTACTGGATCTTGGTTCTGAGGTGAGGAGGGAGGTCAACGCGGGGATTGCTGCGGTGTC
TCGCATGATGGAATGGCACGATGCAAGGGACGGGACGGGAGCGGGGCCTTCTCCTACCTC
TGCATCAAGATCTGGTTCTCAGTGAAACACTCTGCACTTGAAAGGACCGATGCAAATGTA
AAGATTAAGGTATGTGCTCATGCTGTGCTAATGAAAGCCTTAAAT