Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d013081_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:4445501:4447321:-1 gene:Zm00001d013081 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGTCGTCCGCGCCTCTGACCGCCACGCCAGCCCCTCTCCTTCCCGCCAACAAACCCAAG AGCGCAGCACCGCAGCACCCGCTCCTCTCCCACCTCCCGCACTGCACCAGCCTCCGCGGG CTCGCCCAGCTCCACGCCGCCGCCGTTAAGGCCGGCCTCGCCGCGCACCCCGCCTTGGTC ACCAGGCTCCTCACGCTCTGCACCGGCCCGGGCGCGGGCCCCGCCCACCTCGCCTACGCC CGCCAGGTGTTCGACAGGGTGACCCAACCGTCGGACGCCGTCTGGTACAACACCTTGCTC CGCGGCTACGCGCGCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCGGCGGCGGTGCGGGTG TTCGTGCGGATGCTGGAGGAGGGCGTCGCGCCCGACACGTACACGTTCGTGTCGCTGCTC AAGGCGTGCGCCGCGGCGCGCGCGGGGGAGCACGGGCGGCAGGCGCACGCCGTGGCGGTC AAGCTCGGCGCCGCGGGCCACGACTACGTCCGCCCCACGCTCATCAACATGTACGCCGAG TGCGGGGACGCGCGCGCCGCGCGCGTCACGTTTGGCAGGGCGGACGGGGACTGCGTGGTC TCGTACAACGCGATGATCGCCGCGGCCGTCAGGAGCAGCCGGCCCGGGGAGGCGCTGGTG CTGTTCCGGGAGATGCAGGCCAAGGGGCTCAACCCGACGCCCGTGACGGTGATCAGCGTG CTCTCGGCGTGCGCGCTGCTCGGGGCGCTCCAACTTGGGAGGTGGCTCCACGATTATGTT CGGAAGCTAGGGCTCGGTTCCCTCGTCAAGGTCAGCACTGCACTGGTCGACATGTATGCC AAGTGTGGGAGCCTGGAGGACGCCATTGCTGTGTTTCAGGGGATGGAATCAAGAGACAGG CAAGCTTGGTCAGTGATGATCGTTGCGTACGCTAACCATGGGTATGGCAGGGAGGCCATT TCGCTGTTTGAGGAGATGAAGAAGCAAGGGATGAAACCCGATGATATTACATTCCTTGGT CTGCTCTATGCCTGTAGCCACTCTGGTCTCGTGAGTGAAGGGCTTCGGTATTTTGACGAT ATGAAAGATCATGGCATTGTTCCAGGGATCAAGCACTATGGTTGCGTGACAGATTTACTA GCTCGCTCAGGGCAGCTGGAGAGAGCTTATAAGTTCATCGATGAACTGCCAATAAATCCC ACCCCCATCTTATGGAGGACGTTGCTTTCTGCTTGTGGAGGCCATGGAGATGTCGAACTT GGCAAGCGTGTCTTTGAGAGGATTCTTGAGCTGGACGATTCTCATGGTGGTGATTATGTA ATATTCTCGAATTTGTGTGCAAACACTGGATACTGGGAAGAGATGAATAGGGTAAGGAAA CTGATGAGCGACAAAGGTGTGGTAAAGGTGCCTGGCTGCAGCTCAATCGAGATAGATAAC ACGGTTCATGAGTTCTTCGCAGGAGATGGAAGGCACCCCAAATCACAAGAAGCACGGAAA ATGGTTGATGAAGTGATCGATCAACTAAAGCTTGTTGGTTATATCCCTGATACCTCACAT GTGTTTCATGTCGAAATGGGTGAGGAGGAGAAGGCGATAAGCCTAAAATACCATAGTGAG AAGCTGGCAATTGCTTTTGGGCTTCTAAATACTGCTCCAGGGGCTACACTGCGTGTTGTC AAGAATCTCCGCGTATGCCCAGATTGCCATTCGATGGCAAAGTTTGTCTCAATGGTCTTC AATAGGCGAATTATACTCAGAGATCTCAATCGCTTCCATCACTTTGAAAGAGGGATATGC TCTTGTGGTGACTATTGGTAA

Peptide Sequence

PEP ID	Zm00001d013081_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:4445501:4447321:-1 gene:Zm00001d013081 transcript:Zm00001d013081_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MSSAPLTATPAPLLPANKPKSAAPQHPLLSHLPHCTSLRGLAQLHAAAVKAGLAAHPALV TRLLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRV FVRMLEEGVAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAE CGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISV LSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDR QAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDD MKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVEL GKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDN TVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEEKAISLKYHSE KLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFERGIC SCGDYW

Transcript Sequence

Transcript ID	Zm00001d013081_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:4445501:4447321:-1 gene:Zm00001d013081 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGTCGTCCGCGCCTCTGACCGCCACGCCAGCCCCTCTCCTTCCCGCCAACAAACCCAAG AGCGCAGCACCGCAGCACCCGCTCCTCTCCCACCTCCCGCACTGCACCAGCCTCCGCGGG CTCGCCCAGCTCCACGCCGCCGCCGTTAAGGCCGGCCTCGCCGCGCACCCCGCCTTGGTC ACCAGGCTCCTCACGCTCTGCACCGGCCCGGGCGCGGGCCCCGCCCACCTCGCCTACGCC CGCCAGGTGTTCGACAGGGTGACCCAACCGTCGGACGCCGTCTGGTACAACACCTTGCTC CGCGGCTACGCGCGCTCCTCCTCCTCCTCCTCCTCCTCCTCGGCGGCGGCGGTGCGGGTG TTCGTGCGGATGCTGGAGGAGGGCGTCGCGCCCGACACGTACACGTTCGTGTCGCTGCTC AAGGCGTGCGCCGCGGCGCGCGCGGGGGAGCACGGGCGGCAGGCGCACGCCGTGGCGGTC AAGCTCGGCGCCGCGGGCCACGACTACGTCCGCCCCACGCTCATCAACATGTACGCCGAG TGCGGGGACGCGCGCGCCGCGCGCGTCACGTTTGGCAGGGCGGACGGGGACTGCGTGGTC TCGTACAACGCGATGATCGCCGCGGCCGTCAGGAGCAGCCGGCCCGGGGAGGCGCTGGTG CTGTTCCGGGAGATGCAGGCCAAGGGGCTCAACCCGACGCCCGTGACGGTGATCAGCGTG CTCTCGGCGTGCGCGCTGCTCGGGGCGCTCCAACTTGGGAGGTGGCTCCACGATTATGTT CGGAAGCTAGGGCTCGGTTCCCTCGTCAAGGTCAGCACTGCACTGGTCGACATGTATGCC AAGTGTGGGAGCCTGGAGGACGCCATTGCTGTGTTTCAGGGGATGGAATCAAGAGACAGG CAAGCTTGGTCAGTGATGATCGTTGCGTACGCTAACCATGGGTATGGCAGGGAGGCCATT TCGCTGTTTGAGGAGATGAAGAAGCAAGGGATGAAACCCGATGATATTACATTCCTTGGT CTGCTCTATGCCTGTAGCCACTCTGGTCTCGTGAGTGAAGGGCTTCGGTATTTTGACGAT ATGAAAGATCATGGCATTGTTCCAGGGATCAAGCACTATGGTTGCGTGACAGATTTACTA GCTCGCTCAGGGCAGCTGGAGAGAGCTTATAAGTTCATCGATGAACTGCCAATAAATCCC ACCCCCATCTTATGGAGGACGTTGCTTTCTGCTTGTGGAGGCCATGGAGATGTCGAACTT GGCAAGCGTGTCTTTGAGAGGATTCTTGAGCTGGACGATTCTCATGGTGGTGATTATGTA ATATTCTCGAATTTGTGTGCAAACACTGGATACTGGGAAGAGATGAATAGGGTAAGGAAA CTGATGAGCGACAAAGGTGTGGTAAAGGTGCCTGGCTGCAGCTCAATCGAGATAGATAAC ACGGTTCATGAGTTCTTCGCAGGAGATGGAAGGCACCCCAAATCACAAGAAGCACGGAAA ATGGTTGATGAAGTGATCGATCAACTAAAGCTTGTTGGTTATATCCCTGATACCTCACAT GTGTTTCATGTCGAAATGGGTGAGGAGGAGAAGGCGATAAGCCTAAAATACCATAGTGAG AAGCTGGCAATTGCTTTTGGGCTTCTAAATACTGCTCCAGGGGCTACACTGCGTGTTGTC AAGAATCTCCGCGTATGCCCAGATTGCCATTCGATGGCAAAGTTTGTCTCAATGGTCTTC AATAGGCGAATTATACTCAGAGATCTCAATCGCTTCCATCACTTTGAAAGAGGGATATGC TCTTGTGGTGACTATTGGTAA