Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012993_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:2874875:2878453:1 gene:Zm00001d012993 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IWS1/SPN1-transcription factor 2 description:Transcription factor IIS protein
Sequence

ATGGACAGGGAGCTTCTAGAGACGTTTGACGCGGCCAAGAAGGCGGCCGACGAGGCGGCA
GGGGACGGCAACTCGCCGGAGGCTGGCCGCTGCCTCGACGCGCTGCGGCGGCTGCGCGAC
ATTCGCGTCAACACCGACATCCTCGTCTCGACGCAGGTTGGCAAACGCCTTCGACCCCTT
ACTAAGCATCCTCACTCAGGCATTCAAGCAGTTGCTGCAGACCTTTTTGGGTACTGGAAA
AAGGTTGTCCTTGAAGAGTCAGGAAAGAAAAATGGCGGCTCAGAGAATGAAAGATCAAGT
GACTCTTCAGGAAAGGTTGAGAAGGTGAGGCCCGTGAAGATTGAAAAGAACTCTGCATCA
GCAAGCATGAAGCTTGAGAAAAGAGATGTGGATGTTAGGGGTCAGAAGCCTAACAATGTC
AAAGTTGAGAAGACTACTAGTAATGGTTCCAAAGCTCAATCTGTGAAGGTGGAAAGGGTA
TCCAAAGAAGTCATAAGGACTCCTGACTCGAAGAGGCCAGCATCCGTCCCCAATGGCCAC
CCAAAGCTTACATCTCTTGTCAAATGCAATGATCCTACCCGAGATAAAATCCGGGAACTA
CTTGCTGAAGCCTTTGTAAGTGTTTCCAGAGAGACTAGTGATGATGACAGAGACGAAGTG
AAAAACATCTTGGATGAAGTCGAGGCATGCGACCCATACAGGGTTGCCGTGACAGTAGAG
TCTGCACTATTCGAGAGGCTTGGACCTTCCACTGGGACTCACAGGGCGAAATACAGGTCA
ATCATGTTCAACCTGAGGGCTGAAAACAATACCGATTTCCGGAGGAGGGTCCTCATCGGT
CTAGTGGCGCCGGAGAGGCTTCCAGACATACCCCCTGATGAGATGGCTAGCGACGCAAGG
AAGCAAGAGAACATGCAGATCAAGGAGAAGGCTCTGTTCGACTGCGAGCGTGGAGCGGCA
CCAAAGGCGACGACGGACCAGTTCAAGTGTGCCAGATGTGGGCAGCGGAAGACGACTTAC
TACCAGCTGCAGACTCGGAGTGCTGATGAACCGATGACGACGTTCGTCACATGCGTGAAC
TGCAACAATCACTGGAAGTTCTGCTGA

Peptide Sequence

PEP ID

Zm00001d012993_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:2874875:2878453:1 gene:Zm00001d012993 transcript:Zm00001d012993_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IWS1/SPN1-transcription factor 2 description:Transcription factor IIS protein
Sequence

MDRELLETFDAAKKAADEAAGDGNSPEAGRCLDALRRLRDIRVNTDILVSTQVGKRLRPL
TKHPHSGIQAVAADLFGYWKKVVLEESGKKNGGSENERSSDSSGKVEKVRPVKIEKNSAS
ASMKLEKRDVDVRGQKPNNVKVEKTTSNGSKAQSVKVERVSKEVIRTPDSKRPASVPNGH
PKLTSLVKCNDPTRDKIRELLAEAFVSVSRETSDDDRDEVKNILDEVEACDPYRVAVTVE
SALFERLGPSTGTHRAKYRSIMFNLRAENNTDFRRRVLIGLVAPERLPDIPPDEMASDAR
KQENMQIKEKALFDCERGAAPKATTDQFKCARCGQRKTTYYQLQTRSADEPMTTFVTCVN
CNNHWKFC

Transcript Sequence

Transcript ID

Zm00001d012993_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:2874875:2878453:1 gene:Zm00001d012993 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IWS1/SPN1-transcription factor 2 description:Transcription factor IIS protein
Sequence

TTTTCTCTCTCCCCGTCTGCCTCGCCCTCCACACCAGGCCACGCCACACACAGGATAGCG
AGCGGGAGCGACGGCGGCGGCGGAGGAGCTAGGGTTTTGATCCGGCCTCGCCGGCTAGGC
TGCGCCGCCCCGACGCCGAAGCCATGGACAGGGAGCTTCTAGAGACGTTTGACGCGGCCA
AGAAGGCGGCCGACGAGGCGGCAGGGGACGGCAACTCGCCGGAGGCTGGCCGCTGCCTCG
ACGCGCTGCGGCGGCTGCGCGACATTCGCGTCAACACCGACATCCTCGTCTCGACGCAGG
TTGGCAAACGCCTTCGACCCCTTACTAAGCATCCTCACTCAGGCATTCAAGCAGTTGCTG
CAGACCTTTTTGGGTACTGGAAAAAGGTTGTCCTTGAAGAGTCAGGAAAGAAAAATGGCG
GCTCAGAGAATGAAAGATCAAGTGACTCTTCAGGAAAGGTTGAGAAGGTGAGGCCCGTGA
AGATTGAAAAGAACTCTGCATCAGCAAGCATGAAGCTTGAGAAAAGAGATGTGGATGTTA
GGGGTCAGAAGCCTAACAATGTCAAAGTTGAGAAGACTACTAGTAATGGTTCCAAAGCTC
AATCTGTGAAGGTGGAAAGGGTATCCAAAGAAGTCATAAGGACTCCTGACTCGAAGAGGC
CAGCATCCGTCCCCAATGGCCACCCAAAGCTTACATCTCTTGTCAAATGCAATGATCCTA
CCCGAGATAAAATCCGGGAACTACTTGCTGAAGCCTTTGTAAGTGTTTCCAGAGAGACTA
GTGATGATGACAGAGACGAAGTGAAAAACATCTTGGATGAAGTCGAGGCATGCGACCCAT
ACAGGGTTGCCGTGACAGTAGAGTCTGCACTATTCGAGAGGCTTGGACCTTCCACTGGGA
CTCACAGGGCGAAATACAGGTCAATCATGTTCAACCTGAGGGCTGAAAACAATACCGATT
TCCGGAGGAGGGTCCTCATCGGTCTAGTGGCGCCGGAGAGGCTTCCAGACATACCCCCTG
ATGAGATGGCTAGCGACGCAAGGAAGCAAGAGAACATGCAGATCAAGGAGAAGGCTCTGT
TCGACTGCGAGCGTGGAGCGGCACCAAAGGCGACGACGGACCAGTTCAAGTGTGCCAGAT
GTGGGCAGCGGAAGACGACTTACTACCAGCTGCAGACTCGGAGTGCTGATGAACCGATGA
CGACGTTCGTCACATGCGTGAACTGCAACAATCACTGGAAGTTCTGCTGAGTGTTCAGCC
TTGCTAAAGTGTTTACTTAGTTGTGCTGAGCACACTATCCTGCTGTGATGTGTGTGCTCT
GTTAGTTGTGACTGGAAGTTCGACAGGGCAGGCTGAACAACTCAACTTTTTTCCCCTTTT
TTACCCCCCGTAAACTAGGAGCAGTTATCCTCTTCCTCTGTCAGGCAGCCTCCTGATTCA
TTCAGATTGTACTAGTCGAACGCGTGAATGTTGTTGACTTGATCGCATCGTCACCAGATG
TGAATGTTCTTGGGTGGAGTTAGAATAGAATGGTGCCAAGTCAGACGATGCTGATGGATT
AGTGGTGCTGTG