Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012895_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:5:1713445:1718034:-1 gene:Zm00001d012895 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF4378 domain protein
Sequence

ATGGATGTGGAGAAACCTGCTTCCAAGGGGCATGGTTTCTTTGCGCTCTTCGATTGGGGA
AAGAAGTCTAAGAAGCGCCTGTTCGTCGGGAGCACGGGCAGTTCTCCAAATCTGAAGAAT
GCTGCAGATGGGAAGGATATTGATGATAGTACACCAAGCACACGGTCAAATTTGATCCTT
GAAGACACCCCAAGCTTGAAGGAAAGCACTGAACATAGCTGCTCATCTTCAGTAATTGAT
GAAGAGGCTCATTCAAGAAGGAGCCCGACTGTTGTGGCTAGGCTTATGGGCTTGGATTCT
ATGCCTGCGGCAAGCTCAACCGAATCCAATCCCATGCCATTAACCGTGCAACCACCTTTC
CAAACCAACAGCCATGAAGATTTTATTGGCAGAAGTTATGTTGGTAGTCCCCTTAAGACG
CCGGGTAGTCCTATTGATCGGTTTAAAGTGGAAGCACTGCCTCCTAGACTTGCCAAGAGG
ACAGTATCTGTTGCACAGTATAAGTTGCTGTCTCCCATGAAAAATCCTAACAATATATCA
AGCAGGAATGCAGCTGATATAATGGAAGCAGCATCGAGGATCATCAGACCTGGAGTAGAA
AATATCAGTCCCTACAGAGTTCATGATGTTGGGAGTGCAATTGCTGCACGTGCCTACAAC
CCAGGAGAGCTCATAGGAGCCCAACAAAGGTCACAGAAACTTAATGAAGCACTGAGAAAA
TGTGATGGCCCTGCATCTTTTAGGCCGCCAAGTGGAAAACCTTCAGATGGAAGGTTGAGA
GGTTCGGAGGGCACCTCGACGTCCAGGATCTCACAGGCAAATGTATGTGTTCCAGTTGGT
CCAAAGGTAAAATCCGGCGATAGATTAGATACTGCTCGAGCTATGCATGCCCAGGAAAAA
AGAGGCATGAGAAAAGGTGGTAGAAAGCTTGAAACTCTCAAGAACCCTGAAAATAACATG
GCTAAAAGAAGTGGGTTGAACCGACAAAAGGATAGTAACCAAATCGGCACAACAAGTTCA
TCCAGTGTGCTCATGCCAAACAGCAGAAAACAGAATGCTACAGCCACCAAACATAAGGTG
AACTCGAACCCAGCAACCCCCAGTAGACAACGGAGCAATATCCACCAGATAAATGCCCAT
CCAAGAAAGGTGAGGGTGGCCAGCACATTTGCTGGAAACAGTAGTCAAGGTAGCAGAAAA
GTGGACTTGCAGCCAAATGCTCATGCTAACGTAAGAAATAATTCTGTACCCAAAGCAATC
CCGAAGCCAAGAAGATTACAAGACAGGAGAGCGTACTCTGATACAAGCCAGTCAAGTGAT
AGTATTAATTCTGAGAGAAGCCAGAGGCGGATTCGGCACAATATTGTGATTGATGAGCAG
TCATCTTTTTCAACAAACAAAAAGAAAGTCAGCACTGAGATTGTTTCATTCACATTTACC
TCACCAGTTGATAAGTCACTACATGGCATCCACTTCCCCAATCATTCAGTGGAAAAACAG
TTTTTAGGGAATCTGAACACTGTGTCAACTTCAAGCAATACATCAAACACTAAACTTGAT
GTCATTGATGGTGATTTTTTGGGACTCCTGTTGGAGCAGAAATTGAGAGAGTTGACATCT
GGTGTGAGATCGCCCTACACTAAGACAACCAAAGGTGTTCAAGCGCATCACACTTCAACA
GCTTGGGAAGATATGGCATCAGCATGTGAAACATCTAGCATTGCTTCTACTGATTATGAT
AGGGAGTCGTTACAATCTTTCAATGATGGAAAAGCTACTCTCCCCCAGACCGATCTTGCT
TCTAGAAGTCTCCAGTCATCTCAGCCTGTGAAGAAGTACGATCACGATGTCACGGATCAA
GCAGAGCCGCCTGAGCGTCTCGGCCGAGGTCCACTCTTCACATGGGAGGCTTCTATTTCA
ACCGAAACCTGTAGCTCATCAGAGAGCTGGAGGAGTGCAAAGGCAGGAACAAGATTGTTT
GGTTCAGCCGAAGGAGGCAGAACCTGTGACTCGACGCGCTCGAGCAAGTTCCTAGAAGCG
GACGCCTCGTCAGAGTATTCCGACACAGCCTCATCGATCACGGTGGCTACGACAGAGATC
CCTCGATCAGAAAGCAACAGTTCATGTCATATGGATGGTAGACAGGATCTGCAGTTTATA
AGAGAGATACTGAAAGCCAGCTCTCCTGCCCGGCACATCTTCTCTTATCTGGAGCGGTTC
GGCGATTCAGGTGTTCTGGATGCGCACGTATTGGAGGAACTAAACGGGGATATTAGGCTG
TTGGGTGGTGAAGAGCGCAAGGGTTACAGGCTGAGGCGGAGGCTGCTCTTCGACTGTGTC
AATGAATCGTTGAGCGCGAGATGCGCTTACTACTTCAACGGTGGCTACGGCCTGTGGTTC
ACGGGAACGGCGGTCCTGCAGAGCTTGTCGGCAGAAGGGATCCACCGAGAGATGACCGGC
CTGCAGGTCGGCGAGGAGTGGATGGTGGACGAGCTCGTGTACAGGGAGATGAGTGGTCCT
CTGGGGAGCTGGGTCGACTTCAAGGTGGAGTCGTACCAAGGCGGCGGAGACATGGCGGCA
GAGCTGCTAGGCTCCTTGATCGACGAAGTGGTCGCTGATCTTCTGACCACCGGCTCGTTC
TCGTAG

Peptide Sequence

PEP ID

Zm00001d012895_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:5:1713445:1718034:-1 gene:Zm00001d012895 transcript:Zm00001d012895_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF4378 domain protein
Sequence

MDVEKPASKGHGFFALFDWGKKSKKRLFVGSTGSSPNLKNAADGKDIDDSTPSTRSNLIL
EDTPSLKESTEHSCSSSVIDEEAHSRRSPTVVARLMGLDSMPAASSTESNPMPLTVQPPF
QTNSHEDFIGRSYVGSPLKTPGSPIDRFKVEALPPRLAKRTVSVAQYKLLSPMKNPNNIS
SRNAADIMEAASRIIRPGVENISPYRVHDVGSAIAARAYNPGELIGAQQRSQKLNEALRK
CDGPASFRPPSGKPSDGRLRGSEGTSTSRISQANVCVPVGPKVKSGDRLDTARAMHAQEK
RGMRKGGRKLETLKNPENNMAKRSGLNRQKDSNQIGTTSSSSVLMPNSRKQNATATKHKV
NSNPATPSRQRSNIHQINAHPRKVRVASTFAGNSSQGSRKVDLQPNAHANVRNNSVPKAI
PKPRRLQDRRAYSDTSQSSDSINSERSQRRIRHNIVIDEQSSFSTNKKKVSTEIVSFTFT
SPVDKSLHGIHFPNHSVEKQFLGNLNTVSTSSNTSNTKLDVIDGDFLGLLLEQKLRELTS
GVRSPYTKTTKGVQAHHTSTAWEDMASACETSSIASTDYDRESLQSFNDGKATLPQTDLA
SRSLQSSQPVKKYDHDVTDQAEPPERLGRGPLFTWEASISTETCSSSESWRSAKAGTRLF
GSAEGGRTCDSTRSSKFLEADASSEYSDTASSITVATTEIPRSESNSSCHMDGRQDLQFI
REILKASSPARHIFSYLERFGDSGVLDAHVLEELNGDIRLLGGEERKGYRLRRRLLFDCV
NESLSARCAYYFNGGYGLWFTGTAVLQSLSAEGIHREMTGLQVGEEWMVDELVYREMSGP
LGSWVDFKVESYQGGGDMAAELLGSLIDEVVADLLTTGSFS

Transcript Sequence

Transcript ID

Zm00001d012895_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:1713445:1718034:-1 gene:Zm00001d012895 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF4378 domain protein
Sequence

GTGAGAGAGAGGGGGAAAAGCCAGAAAGGCGTCCTCTGTCCTCTCCTTTTCTCTCCCCTC
CCTCCCTCCCTCCAAGCTCCAATCCAGCAACCCCGGTCTCCCCACCCCACCTCACGCAGG
CGGCATTAATGGATTCCGCGGCCGCGGCCACCTCCCTCCACCACACCCGCCTCCTTCCCG
CTGCGGCGAGAACCCTAACGTGACGCGCTGCCCCCGAACGGCTCCTCCTCCCTCCCTCCA
CGCCGTCGTTTGCTCCGGGTGTGCTCTCGTTGGGGGAGGGAAAAGAAAAGGTCGCTGCTT
TTCTGTGTGGGCGTGGGTGGCGCGGCGGCCCAATGCGGCTCGATCCGGATTGCTCCGCGC
CTCGATTTGCCTCGGGTTTGGCGCCGGCTCCGTGAGTCCCCGCGCCTGCTGCTGCCGCCG
CCGCCGCCGCCGTTCCGCCTCGGAAAGGTTTTGGTGAGGAGAAATGGATGTGGAGAAACC
TGCTTCCAAGGGGCATGGTTTCTTTGCGCTCTTCGATTGGGGAAAGAAGTCTAAGAAGCG
CCTGTTCGTCGGGAGCACGGGCAGTTCTCCAAATCTGAAGAATGCTGCAGATGGGAAGGA
TATTGATGATAGTACACCAAGCACACGGTCAAATTTGATCCTTGAAGACACCCCAAGCTT
GAAGGAAAGCACTGAACATAGCTGCTCATCTTCAGTAATTGATGAAGAGGCTCATTCAAG
AAGGAGCCCGACTGTTGTGGCTAGGCTTATGGGCTTGGATTCTATGCCTGCGGCAAGCTC
AACCGAATCCAATCCCATGCCATTAACCGTGCAACCACCTTTCCAAACCAACAGCCATGA
AGATTTTATTGGCAGAAGTTATGTTGGTAGTCCCCTTAAGACGCCGGGTAGTCCTATTGA
TCGGTTTAAAGTGGAAGCACTGCCTCCTAGACTTGCCAAGAGGACAGTATCTGTTGCACA
GTATAAGTTGCTGTCTCCCATGAAAAATCCTAACAATATATCAAGCAGGAATGCAGCTGA
TATAATGGAAGCAGCATCGAGGATCATCAGACCTGGAGTAGAAAATATCAGTCCCTACAG
AGTTCATGATGTTGGGAGTGCAATTGCTGCACGTGCCTACAACCCAGGAGAGCTCATAGG
AGCCCAACAAAGGTCACAGAAACTTAATGAAGCACTGAGAAAATGTGATGGCCCTGCATC
TTTTAGGCCGCCAAGTGGAAAACCTTCAGATGGAAGGTTGAGAGGTTCGGAGGGCACCTC
GACGTCCAGGATCTCACAGGCAAATGTATGTGTTCCAGTTGGTCCAAAGGTAAAATCCGG
CGATAGATTAGATACTGCTCGAGCTATGCATGCCCAGGAAAAAAGAGGCATGAGAAAAGG
TGGTAGAAAGCTTGAAACTCTCAAGAACCCTGAAAATAACATGGCTAAAAGAAGTGGGTT
GAACCGACAAAAGGATAGTAACCAAATCGGCACAACAAGTTCATCCAGTGTGCTCATGCC
AAACAGCAGAAAACAGAATGCTACAGCCACCAAACATAAGGTGAACTCGAACCCAGCAAC
CCCCAGTAGACAACGGAGCAATATCCACCAGATAAATGCCCATCCAAGAAAGGTGAGGGT
GGCCAGCACATTTGCTGGAAACAGTAGTCAAGGTAGCAGAAAAGTGGACTTGCAGCCAAA
TGCTCATGCTAACGTAAGAAATAATTCTGTACCCAAAGCAATCCCGAAGCCAAGAAGATT
ACAAGACAGGAGAGCGTACTCTGATACAAGCCAGTCAAGTGATAGTATTAATTCTGAGAG
AAGCCAGAGGCGGATTCGGCACAATATTGTGATTGATGAGCAGTCATCTTTTTCAACAAA
CAAAAAGAAAGTCAGCACTGAGATTGTTTCATTCACATTTACCTCACCAGTTGATAAGTC
ACTACATGGCATCCACTTCCCCAATCATTCAGTGGAAAAACAGTTTTTAGGGAATCTGAA
CACTGTGTCAACTTCAAGCAATACATCAAACACTAAACTTGATGTCATTGATGGTGATTT
TTTGGGACTCCTGTTGGAGCAGAAATTGAGAGAGTTGACATCTGGTGTGAGATCGCCCTA
CACTAAGACAACCAAAGGTGTTCAAGCGCATCACACTTCAACAGCTTGGGAAGATATGGC
ATCAGCATGTGAAACATCTAGCATTGCTTCTACTGATTATGATAGGGAGTCGTTACAATC
TTTCAATGATGGAAAAGCTACTCTCCCCCAGACCGATCTTGCTTCTAGAAGTCTCCAGTC
ATCTCAGCCTGTGAAGAAGTACGATCACGATGTCACGGATCAAGCAGAGCCGCCTGAGCG
TCTCGGCCGAGGTCCACTCTTCACATGGGAGGCTTCTATTTCAACCGAAACCTGTAGCTC
ATCAGAGAGCTGGAGGAGTGCAAAGGCAGGAACAAGATTGTTTGGTTCAGCCGAAGGAGG
CAGAACCTGTGACTCGACGCGCTCGAGCAAGTTCCTAGAAGCGGACGCCTCGTCAGAGTA
TTCCGACACAGCCTCATCGATCACGGTGGCTACGACAGAGATCCCTCGATCAGAAAGCAA
CAGTTCATGTCATATGGATGGTAGACAGGATCTGCAGTTTATAAGAGAGATACTGAAAGC
CAGCTCTCCTGCCCGGCACATCTTCTCTTATCTGGAGCGGTTCGGCGATTCAGGTGTTCT
GGATGCGCACGTATTGGAGGAACTAAACGGGGATATTAGGCTGTTGGGTGGTGAAGAGCG
CAAGGGTTACAGGCTGAGGCGGAGGCTGCTCTTCGACTGTGTCAATGAATCGTTGAGCGC
GAGATGCGCTTACTACTTCAACGGTGGCTACGGCCTGTGGTTCACGGGAACGGCGGTCCT
GCAGAGCTTGTCGGCAGAAGGGATCCACCGAGAGATGACCGGCCTGCAGGTCGGCGAGGA
GTGGATGGTGGACGAGCTCGTGTACAGGGAGATGAGTGGTCCTCTGGGGAGCTGGGTCGA
CTTCAAGGTGGAGTCGTACCAAGGCGGCGGAGACATGGCGGCAGAGCTGCTAGGCTCCTT
GATCGACGAAGTGGTCGCTGATCTTCTGACCACCGGCTCGTTCTCGTAGCGGATGCTGGA
TTGGATGGATCCTCCGCCCTCACTAACGATACC