Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d012893_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:5:1661518:1666868:-1 gene:Zm00001d012893 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translocase of chloroplast 159 chloroplastic
Sequence	ATGGCGCTGCTGGTGCGCGCGCGGCTGTCCCCGCTGGACGACGACGACGACGCGTCCACG GCGTCCTCGCTCTCCTCGGCGGCCTCCTCCCCGCCGCTCTCGCCCGCGGCCGCCTCCACG CCGCTACCGCTGTACGCGCGCGCCGCGGTGCTCGTCGCCCCGCGGATCGCCGCGCAGCTC TCGTCCACGGAGGAGGACGTCAGCGAGTCCTTCGATGACACCACCAGCTCCGGCGAGGAC GTCGACCTGCCGGAGGAGGTGTCCAACGGCTTCTTCTTCAGCGTCGCCAGGGTGCCGCCG ACGCCGACGTCCGAGGACCCGATCCTGGTCCCCGGCGGCGGGGTGGCGGGGATCGCCGCT GCGGAGGCGCCCGAGGCCGAGGGCGGGGACGGCTTGGGCGCCGCGGAGGAGCCGCTGGAG GGGGGCATCTTCGTGAGCGCCAAGAATGGGTTGGATGGCGTCGAGGGTTCGCTGGGTGGC AGCTTCCTCAAATCTGGGAGCTGCATTGGCGCGCACAACGGCGGGGAGGCTGCTGCGTCA GGTGATTCGGTGATCGTTTCAGATGGCACCGTGCTGAATGAGGAGGATGATAAGCAGGGG GAGCAGGCTGTCAATGACGCGGCGTCTGGGCCTTTACTGATGCCTGTTGCTGGGGTAGAT GGCCTCGTCATTGTGGATGCTTTGGAGGGGATGCTTGATCGTGAGGCTGCTGAATCGCTT CCTATTCCCAGTGCTACTGCTACTGGTACAGAAGGAGAGGAGGCTGCTGCCGAGCTTCGC AGCGATGCAGTAGGTAGTGCAGCCAAGCTTGATGCTAGTCCTGAATATGCTGCCACAGGA GATGTCATATCTGATGCCATGCAAGTTCTTGATAGTGTAGATGATGAAGCTGATGGTGAT CATGAAGGTTCCGACGATCTTACATCCATGCCAATCTCTTCAAGTGACTATGCTGTGGAA CTTGCAAAAGAACTGGAGAACAACGTGCCTACTTCCATAGGCGCACGCTTTGTTGCGGAT GATTCAGATGATGCAGAGATCAACGGTGATGATGAATATGAAGAAGAGATGAATGGAAAG GAGAACGAGCTTTTTGATCATACAGCTTTAATTGAGCTTCTAAGAGCTGCAAGCAGCTCG CCTGAACAAGGCAAGGCCAAGGTTTTCCCAGTTGAATCTTCTGAACCTAGGGATCTGCCT CCCACTTTAGCCAGCAATGCTAGGATGAACGTGGCTTCTGCTCCTGTGCCACAAGCAATC GCTGACCCTGAGAAACAGATGACCGATGAGGAAAAGAAGATTTACGGAAAGGTGGACATG GCACGAATCAAATACATGCGTCTTGTTCATAGATTGGGGTATGATACTAACCATCAGGTA CCAGTACAAGTGTTGTTTCGGCTTAGTCTTGTTGAAAGTTTCAGGTGCGTAAGGATGACA AACCATTCCTCAGAGATCGAGAATGCCTGGAAGAGGGCTTTGCAGCGTGAGGCAGAGGGA ACTGAGAACCTTGAATTCTCCTGCAATGTTTTGGTCCTTGGGAAGACTGGAGTTGGGAAA AGTGCAACAATAAATTCCATCTTCGGGGAAGATAAATCCAAAACAAATGCTTTTCTACCG GCAACATCATCTGTGAAGGAGATTAATGGAGTTGTTAATGGTGTTAAGTTTCATGTCGTC GACACCCCTGGGCTTGGGACTTCAGCCGAGGATGAAAAATCAAATAGGAAAATGCTCAAT GCTGTGAAGAAGTATATGAAGAGATGCCCTCCAGATATTATTCTGTATGTTGATAGGCTT GATACACCGCGGGAGGAGGCAAATAGCCTATCCCTCTTGCGATGCATTACCAGTGTGCTA GGCCTGTCAATATGGCCCAGAACAATTATTACTCTCACTCACTCAGGAGCAGCTTCCCCT GAAGGCCCTAATGGTTTGGAAGTGAACTATGATATGGTTGTGTCTCGTCGAACTCATGCC ATTCAGCAAAGCATCCGGCAGATAACTAATGATCCTCAAATTCAGAATCCTGTGGCTCTT GTGGAGAACCATCATCTGTGTCGGAGGAACGCAGAAGGTGAAAAGATGCTTCCTGATGGC CTTATCTGGAGGCGGCTCCTCCTCCTCCTATGCTTCTCACTAAAGATGATTGCTGAGATT GACAGTCTCTCAACCCGCCGTGCTTCTTCTGCAAGTTTCTTAGGCCGCCTTCTCCAAGTG CCTCCAATTCCTTACTTCTTATCATCTTTGTTGAAATCTAGAGAGCACCCTAAGCGTTCC AATGACCATAATGTTGTGAGTGTGGACTCAGATTTTTACCTAGATGAATTGTTGAATGGG GACCAAGAGGATGAAGATGACTATGATCAACTTCCTCCCTTCAAGCCACTAAGTAAATCC CAGGTTGCAAAACTCTCCAAGGAGCAACAGATTTTGTATTTTGATGAATCTGATTACCGA ACTAAGCTGCTTCAGAAGAAGCAGCTGAAGGAACAGCTCAAAGGATTTAAGGAAATGAAG AAGAAAGAGGGTGATGATAATGATATACTTTCTGATGATGATCATCCCGATGATGGATAT GATACAGATAGATATCCTATGCCAGAATGGACCTTGCCATCTTCATTTGATTCTGATGAT CCTGTGTACCGCTATCGTTGCCCTGTGTCTACACCAAACCTTCTGGTGCGTGCTGTTTAC AATCCTGATGGATGGGATCATGATTTTGGATTTGATGGTGTGAGTGTCCAACACAGCCAT GATGTTGCTAACAAATATCCAGCATCTCTGTGGGTTCAAGTTAACAAGGACAAGAGAGAG TTTACCATCCATTTGGATTCCTCAATGTCAGTTAAGCATGGAGATTATGCCTCGAGCCTG GCAGGCTTTGACATCCAAACAATTATGAACCAGCTTTCTTACACCCTCAGAGGGGAGACC AAATTTAAAAACTTCAAGAAAAACATCACTACTGGTGGTTTATCCATGACCTTTTTGGGA AATTCCATGGTGGCTGGAGCAAAGCTTGAAGACAAGCTTTTAGTTGGTAACAGGTTAACA CTATCAGGCAACACTGGTGCTGTGTCCATGAGAGGTGATGCTGCATATGGAGTGATTATG GAAGCAACTCTTCGTGAAAAAAGCTATCCTGTAGGTCAAGGCGTTGCCACTTTGGGTGCA TCCTTAGTGAAATGGCATAAAGAGTGGACCATGGCCGCAAATTTGGATTCCCATGTCTCT GTTGGAAGGTCTTCAAACATGTCAGTTCATGTTGATGTAAACAACAAACTAACTGGACGG GTCAGCATCAAGGCCAACACTTCAGAACAGTTGAACATTGCCCTTTTAGGTACATGTTCA GTGATAATGTATGTGTGGAACAAGATGCACCCTAGTGCAGATCCTAATGCTGAGTAG

Peptide Sequence

PEP ID	Zm00001d012893_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:5:1661518:1666868:-1 gene:Zm00001d012893 transcript:Zm00001d012893_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translocase of chloroplast 159 chloroplastic
Sequence	MALLVRARLSPLDDDDDASTASSLSSAASSPPLSPAAASTPLPLYARAAVLVAPRIAAQL SSTEEDVSESFDDTTSSGEDVDLPEEVSNGFFFSVARVPPTPTSEDPILVPGGGVAGIAA AEAPEAEGGDGLGAAEEPLEGGIFVSAKNGLDGVEGSLGGSFLKSGSCIGAHNGGEAAAS GDSVIVSDGTVLNEEDDKQGEQAVNDAASGPLLMPVAGVDGLVIVDALEGMLDREAAESL PIPSATATGTEGEEAAAELRSDAVGSAAKLDASPEYAATGDVISDAMQVLDSVDDEADGD HEGSDDLTSMPISSSDYAVELAKELENNVPTSIGARFVADDSDDAEINGDDEYEEEMNGK ENELFDHTALIELLRAASSSPEQGKAKVFPVESSEPRDLPPTLASNARMNVASAPVPQAI ADPEKQMTDEEKKIYGKVDMARIKYMRLVHRLGYDTNHQVPVQVLFRLSLVESFRCVRMT NHSSEIENAWKRALQREAEGTENLEFSCNVLVLGKTGVGKSATINSIFGEDKSKTNAFLP ATSSVKEINGVVNGVKFHVVDTPGLGTSAEDEKSNRKMLNAVKKYMKRCPPDIILYVDRL DTPREEANSLSLLRCITSVLGLSIWPRTIITLTHSGAASPEGPNGLEVNYDMVVSRRTHA IQQSIRQITNDPQIQNPVALVENHHLCRRNAEGEKMLPDGLIWRRLLLLLCFSLKMIAEI DSLSTRRASSASFLGRLLQVPPIPYFLSSLLKSREHPKRSNDHNVVSVDSDFYLDELLNG DQEDEDDYDQLPPFKPLSKSQVAKLSKEQQILYFDESDYRTKLLQKKQLKEQLKGFKEMK KKEGDDNDILSDDDHPDDGYDTDRYPMPEWTLPSSFDSDDPVYRYRCPVSTPNLLVRAVY NPDGWDHDFGFDGVSVQHSHDVANKYPASLWVQVNKDKREFTIHLDSSMSVKHGDYASSL AGFDIQTIMNQLSYTLRGETKFKNFKKNITTGGLSMTFLGNSMVAGAKLEDKLLVGNRLT LSGNTGAVSMRGDAAYGVIMEATLREKSYPVGQGVATLGASLVKWHKEWTMAANLDSHVS VGRSSNMSVHVDVNNKLTGRVSIKANTSEQLNIALLGTCSVIMYVWNKMHPSADPNAE

Transcript Sequence

Transcript ID	Zm00001d012893_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:1661518:1666868:-1 gene:Zm00001d012893 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translocase of chloroplast 159 chloroplastic
Sequence	ATGGCGCTGCTGGTGCGCGCGCGGCTGTCCCCGCTGGACGACGACGACGACGCGTCCACG GCGTCCTCGCTCTCCTCGGCGGCCTCCTCCCCGCCGCTCTCGCCCGCGGCCGCCTCCACG CCGCTACCGCTGTACGCGCGCGCCGCGGTGCTCGTCGCCCCGCGGATCGCCGCGCAGCTC TCGTCCACGGAGGAGGACGTCAGCGAGTCCTTCGATGACACCACCAGCTCCGGCGAGGAC GTCGACCTGCCGGAGGAGGTGTCCAACGGCTTCTTCTTCAGCGTCGCCAGGGTGCCGCCG ACGCCGACGTCCGAGGACCCGATCCTGGTCCCCGGCGGCGGGGTGGCGGGGATCGCCGCT GCGGAGGCGCCCGAGGCCGAGGGCGGGGACGGCTTGGGCGCCGCGGAGGAGCCGCTGGAG GGGGGCATCTTCGTGAGCGCCAAGAATGGGTTGGATGGCGTCGAGGGTTCGCTGGGTGGC AGCTTCCTCAAATCTGGGAGCTGCATTGGCGCGCACAACGGCGGGGAGGCTGCTGCGTCA GGTGATTCGGTGATCGTTTCAGATGGCACCGTGCTGAATGAGGAGGATGATAAGCAGGGG GAGCAGGCTGTCAATGACGCGGCGTCTGGGCCTTTACTGATGCCTGTTGCTGGGGTAGAT GGCCTCGTCATTGTGGATGCTTTGGAGGGGATGCTTGATCGTGAGGCTGCTGAATCGCTT CCTATTCCCAGTGCTACTGCTACTGGTACAGAAGGAGAGGAGGCTGCTGCCGAGCTTCGC AGCGATGCAGTAGGTAGTGCAGCCAAGCTTGATGCTAGTCCTGAATATGCTGCCACAGGA GATGTCATATCTGATGCCATGCAAGTTCTTGATAGTGTAGATGATGAAGCTGATGGTGAT CATGAAGGTTCCGACGATCTTACATCCATGCCAATCTCTTCAAGTGACTATGCTGTGGAA CTTGCAAAAGAACTGGAGAACAACGTGCCTACTTCCATAGGCGCACGCTTTGTTGCGGAT GATTCAGATGATGCAGAGATCAACGGTGATGATGAATATGAAGAAGAGATGAATGGAAAG GAGAACGAGCTTTTTGATCATACAGCTTTAATTGAGCTTCTAAGAGCTGCAAGCAGCTCG CCTGAACAAGGCAAGGCCAAGGTTTTCCCAGTTGAATCTTCTGAACCTAGGGATCTGCCT CCCACTTTAGCCAGCAATGCTAGGATGAACGTGGCTTCTGCTCCTGTGCCACAAGCAATC GCTGACCCTGAGAAACAGATGACCGATGAGGAAAAGAAGATTTACGGAAAGGTGGACATG GCACGAATCAAATACATGCGTCTTGTTCATAGATTGGGGTATGATACTAACCATCAGGTA CCAGTACAAGTGTTGTTTCGGCTTAGTCTTGTTGAAAGTTTCAGGTGCGTAAGGATGACA AACCATTCCTCAGAGATCGAGAATGCCTGGAAGAGGGCTTTGCAGCGTGAGGCAGAGGGA ACTGAGAACCTTGAATTCTCCTGCAATGTTTTGGTCCTTGGGAAGACTGGAGTTGGGAAA AGTGCAACAATAAATTCCATCTTCGGGGAAGATAAATCCAAAACAAATGCTTTTCTACCG GCAACATCATCTGTGAAGGAGATTAATGGAGTTGTTAATGGTGTTAAGTTTCATGTCGTC GACACCCCTGGGCTTGGGACTTCAGCCGAGGATGAAAAATCAAATAGGAAAATGCTCAAT GCTGTGAAGAAGTATATGAAGAGATGCCCTCCAGATATTATTCTGTATGTTGATAGGCTT GATACACCGCGGGAGGAGGCAAATAGCCTATCCCTCTTGCGATGCATTACCAGTGTGCTA GGCCTGTCAATATGGCCCAGAACAATTATTACTCTCACTCACTCAGGAGCAGCTTCCCCT GAAGGCCCTAATGGTTTGGAAGTGAACTATGATATGGTTGTGTCTCGTCGAACTCATGCC ATTCAGCAAAGCATCCGGCAGATAACTAATGATCCTCAAATTCAGAATCCTGTGGCTCTT GTGGAGAACCATCATCTGTGTCGGAGGAACGCAGAAGGTGAAAAGATGCTTCCTGATGGC CTTATCTGGAGGCGGCTCCTCCTCCTCCTATGCTTCTCACTAAAGATGATTGCTGAGATT GACAGTCTCTCAACCCGCCGTGCTTCTTCTGCAAGTTTCTTAGGCCGCCTTCTCCAAGTG CCTCCAATTCCTTACTTCTTATCATCTTTGTTGAAATCTAGAGAGCACCCTAAGCGTTCC AATGACCATAATGTTGTGAGTGTGGACTCAGATTTTTACCTAGATGAATTGTTGAATGGG GACCAAGAGGATGAAGATGACTATGATCAACTTCCTCCCTTCAAGCCACTAAGTAAATCC CAGGTTGCAAAACTCTCCAAGGAGCAACAGATTTTGTATTTTGATGAATCTGATTACCGA ACTAAGCTGCTTCAGAAGAAGCAGCTGAAGGAACAGCTCAAAGGATTTAAGGAAATGAAG AAGAAAGAGGGTGATGATAATGATATACTTTCTGATGATGATCATCCCGATGATGGATAT GATACAGATAGATATCCTATGCCAGAATGGACCTTGCCATCTTCATTTGATTCTGATGAT CCTGTGTACCGCTATCGTTGCCCTGTGTCTACACCAAACCTTCTGGTGCGTGCTGTTTAC AATCCTGATGGATGGGATCATGATTTTGGATTTGATGGTGTGAGTGTCCAACACAGCCAT GATGTTGCTAACAAATATCCAGCATCTCTGTGGGTTCAAGTTAACAAGGACAAGAGAGAG TTTACCATCCATTTGGATTCCTCAATGTCAGTTAAGCATGGAGATTATGCCTCGAGCCTG GCAGGCTTTGACATCCAAACAATTATGAACCAGCTTTCTTACACCCTCAGAGGGGAGACC AAATTTAAAAACTTCAAGAAAAACATCACTACTGGTGGTTTATCCATGACCTTTTTGGGA AATTCCATGGTGGCTGGAGCAAAGCTTGAAGACAAGCTTTTAGTTGGTAACAGGTTAACA CTATCAGGCAACACTGGTGCTGTGTCCATGAGAGGTGATGCTGCATATGGAGTGATTATG GAAGCAACTCTTCGTGAAAAAAGCTATCCTGTAGGTCAAGGCGTTGCCACTTTGGGTGCA TCCTTAGTGAAATGGCATAAAGAGTGGACCATGGCCGCAAATTTGGATTCCCATGTCTCT GTTGGAAGGTCTTCAAACATGTCAGTTCATGTTGATGTAAACAACAAACTAACTGGACGG GTCAGCATCAAGGCCAACACTTCAGAACAGTTGAACATTGCCCTTTTAGGTACATGTTCA GTGATAATGTATGTGTGGAACAAGATGCACCCTAGTGCAGATCCTAATGCTGAGTAGCAC TGGTTAAACTCCCCAGATCCAAGCAGTCACAGGTTGGCAAGCACATCATTTGTGTCCCAG CTTATGATTCAAGAACGAGGTAGCTGAAAACTGCACACTCTGGCAACTTGCCAGGATTGG AAGTTGAACCATCGCTTTCTGTCAAGAATCGAGATAAGTGTAGCTGTGCTGGCGTTTTTA CCCCCATCCAGTGCGCAGTTGGTGGCCAACTTCATGAATCATGAGTGACTCAACTTTTTT TTTTTGTCAAAAGTTGTAATTAGGGTGTGAGGGTAAAATATCACTTTAAGACCATAAATA AGCTGAAATTAGCTAGTATTGGGTAGCTTATTTTAGCTTATTTGTAATTCTAAAGTGATA TTTCATCTTTCTAACATTTCACCATAATCCAGCTTATATAATCTAGG