Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012880_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:1564032:1566921:1 gene:Zm00001d012880 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein

Sequence

ATGGCGGACTCCACGCACCACACCATCCGCCGCGCCGCGGCGCGCCCGCGCGGCTGGTGC
TGCTCGTTCGCGGGCGTCCCGGAGAGCCCCGAGCACCGCCGCGCGCTCCCGGCGCCCGCC
TCCGCCGCCGACGCCGTCCCGAAGCCTCCGCCTCCGCCGCCGCCAAAGTCCCCGCTGGCG
CCGTCGTCGCACGGCTCGCCCTCGTCCAAGCTCGCGGGGCTCATCGACACGCGGAGGATC
CTCTCGCCGGGCCGCGTGTCCCCGATCGACTCCGAGGGGTCACCGGCGGCGGCGCCGAGG
GAGCAGGCCGCGCCTTTCGTGGCGGTGCGGGAGGACGAGGACGAGGGCGGGGACGGCGGC
GAGGCGCCGGCGCTGGATCTGAGGCTGTGCCTCAGGGCCAGCGACGGCCGGTGCGTCGCC
ATGGACCTCGACTCCGCCGTGCTGTGCGGGAGCAGCGCCTTCTTCGCCGGCATGGTGCCG
GACGCATCTGCGGCCGGGGGAAGGAGGGTCGAGGTGGATGGGGTGGACGACTTGGAGGCG
TTCAAGGACGCGGTGGAGCTCATGTTCGAGCCCGACGCCTTGCGGTGGCTCGCCAGGGCC
GGCGTGTCACGGGCAACCGCTGTGCTCCAGGTTTGCTCCTCTATTGCGTTCGACAAAGGA
GTCGAATCATGTTTGAAGTACATCGAGGCAGTTCCATGGAGCGAGAGCGAGGAAGAGAAG
CTGAAACACGTTTTTGCCAGATGCACTTTCGGCGAATCAGTTAGTAAAGATGTGCTGGCA
AGATTGCAGCAGCAGTGCGCGAGCGGCTCGGAGGACCTGGCGGTGCAGCTCGTGGAATCT
ATCACGAGCGGAGCCAACAACGGCGCGAGGAAAGAAATGCAGTCTTTGGTGAGCGGTCTC
CTAAGCAGAAGCTCAGTCTACCATAAGGACCTGTCCGGGGTGAACAAGGGGGGCCTTTAC
CGAATCTGCCGTTCCTGCTTGAGCTCACTTGTGGAACTTTTCATGGAGGACTCAGATGGC
GGCCAAGCTATGGCACCTTCAGGCAGAAGGCCTATGGTTGAAAGGATCAGTCAGCAAACT
GAGAATCTCAACTGGCTCTTGGACATCCTTCTGAACAACGACATGGCAGAAGAATACGTT
GAGCTGTGGGGTACGCAGGAGGAGCTCATCAGAATGCACGAGCGAGCATCGCCGATGTTC
AGGTACGAGCTCAGCCGGGTATCGGCGAGCGTGTTCATGGCTCTGGGGAGAGGGAGAATC
CAGTGCCCCAGCGACACGAGGAGCCAGCTGTTCCGTGGATGGTTCAGGCCCATGCTTGTG
GACTTCGGCTGGCTGCAGAGGTGCTCCAAGGGGCTGGATGTGAGAGTCCTGGAGGAGAAC
CTGGGGCAGGCCCTGCTCACCCTTCCGCTCCACCTACAACAGAGCTTGTTCGTAGAATGG
TTTCAGTGCTTTGCGTCTAGAGGCACAGGAGGATGCCCTAATCTCAGCAGAGCTTTCCAG
GTATGGTGGAGGAGGTCATTTGTTAATTAG

Peptide Sequence

PEP ID

Zm00001d012880_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:1564032:1566921:1 gene:Zm00001d012880 transcript:Zm00001d012880_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein

Sequence

MADSTHHTIRRAAARPRGWCCSFAGVPESPEHRRALPAPASAADAVPKPPPPPPPKSPLA
PSSHGSPSSKLAGLIDTRRILSPGRVSPIDSEGSPAAAPREQAAPFVAVREDEDEGGDGG
EAPALDLRLCLRASDGRCVAMDLDSAVLCGSSAFFAGMVPDASAAGGRRVEVDGVDDLEA
FKDAVELMFEPDALRWLARAGVSRATAVLQVCSSIAFDKGVESCLKYIEAVPWSESEEEK
LKHVFARCTFGESVSKDVLARLQQQCASGSEDLAVQLVESITSGANNGARKEMQSLVSGL
LSRSSVYHKDLSGVNKGGLYRICRSCLSSLVELFMEDSDGGQAMAPSGRRPMVERISQQT
ENLNWLLDILLNNDMAEEYVELWGTQEELIRMHERASPMFRYELSRVSASVFMALGRGRI
QCPSDTRSQLFRGWFRPMLVDFGWLQRCSKGLDVRVLEENLGQALLTLPLHLQQSLFVEW
FQCFASRGTGGCPNLSRAFQVWWRRSFVN

Transcript Sequence

Transcript ID

Zm00001d012880_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:1564032:1566921:1 gene:Zm00001d012880 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein

Sequence

GTCTCCCTCCCTCCCATGGCCGCGGCCACCTCCACCCCATGCTGAGCCAAACCCCCCAAC
TAGTTTCAGTGTCCGCCCAGCAGTCAGCAGAGGAGGAGCGCGACAGATCCTCGGCGCCGG
CGCGCCCTCCGGGTCCCCCGCCCCACCACCACTCACATCACATCACATGGCGGACTCCAC
GCACCACACCATCCGCCGCGCCGCGGCGCGCCCGCGCGGCTGGTGCTGCTCGTTCGCGGG
CGTCCCGGAGAGCCCCGAGCACCGCCGCGCGCTCCCGGCGCCCGCCTCCGCCGCCGACGC
CGTCCCGAAGCCTCCGCCTCCGCCGCCGCCAAAGTCCCCGCTGGCGCCGTCGTCGCACGG
CTCGCCCTCGTCCAAGCTCGCGGGGCTCATCGACACGCGGAGGATCCTCTCGCCGGGCCG
CGTGTCCCCGATCGACTCCGAGGGGTCACCGGCGGCGGCGCCGAGGGAGCAGGCCGCGCC
TTTCGTGGCGGTGCGGGAGGACGAGGACGAGGGCGGGGACGGCGGCGAGGCGCCGGCGCT
GGATCTGAGGCTGTGCCTCAGGGCCAGCGACGGCCGGTGCGTCGCCATGGACCTCGACTC
CGCCGTGCTGTGCGGGAGCAGCGCCTTCTTCGCCGGCATGGTGCCGGACGCATCTGCGGC
CGGGGGAAGGAGGGTCGAGGTGGATGGGGTGGACGACTTGGAGGCGTTCAAGGACGCGGT
GGAGCTCATGTTCGAGCCCGACGCCTTGCGGTGGCTCGCCAGGGCCGGCGTGTCACGGGC
AACCGCTGTGCTCCAGGTTTGCTCCTCTATTGCGTTCGACAAAGGAGTCGAATCATGTTT
GAAGTACATCGAGGCAGTTCCATGGAGCGAGAGCGAGGAAGAGAAGCTGAAACACGTTTT
TGCCAGATGCACTTTCGGCGAATCAGTTAGTAAAGATGTGCTGGCAAGATTGCAGCAGCA
GTGCGCGAGCGGCTCGGAGGACCTGGCGGTGCAGCTCGTGGAATCTATCACGAGCGGAGC
CAACAACGGCGCGAGGAAAGAAATGCAGTCTTTGGTGAGCGGTCTCCTAAGCAGAAGCTC
AGTCTACCATAAGGACCTGTCCGGGGTGAACAAGGGGGGCCTTTACCGAATCTGCCGTTC
CTGCTTGAGCTCACTTGTGGAACTTTTCATGGAGGACTCAGATGGCGGCCAAGCTATGGC
ACCTTCAGGCAGAAGGCCTATGGTTGAAAGGATCAGTCAGCAAACTGAGAATCTCAACTG
GCTCTTGGACATCCTTCTGAACAACGACATGGCAGAAGAATACGTTGAGCTGTGGGGTAC
GCAGGAGGAGCTCATCAGAATGCACGAGCGAGCATCGCCGATGTTCAGGTACGAGCTCAG
CCGGGTATCGGCGAGCGTGTTCATGGCTCTGGGGAGAGGGAGAATCCAGTGCCCCAGCGA
CACGAGGAGCCAGCTGTTCCGTGGATGGTTCAGGCCCATGCTTGTGGACTTCGGCTGGCT
GCAGAGGTGCTCCAAGGGGCTGGATGTGAGAGTCCTGGAGGAGAACCTGGGGCAGGCCCT
GCTCACCCTTCCGCTCCACCTACAACAGAGCTTGTTCGTAGAATGGTTTCAGTGCTTTGC
GTCTAGAGGCACAGGAGGATGCCCTAATCTCAGCAGAGCTTTCCAGGTATGGTGGAGGAG
GTCATTTGTTAATTAGATCAGCTGGTTCTTCTTCCCATTCTGTGCCCTAGATGCTTGCTA
TACAAACATGAGCCAGTATAAATGTAAAGCGTCATCATAAGTATGTTTATTTTTTGCCCT
AAAGTTGGCATGACCTTATTC