Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d012868_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:5:1369611:1375366:1 gene:Zm00001d012868 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase3 description:carotene isomerase3
Sequence	ATGGCCGCCTCGGCATTGGCCTCCCGCGCGCTGCGGCCTCCGCACGGCCGCCACCCTCCC GCCCCTTCGCCGCGTCCGCGTCCGCGCTCGGCAACCGCCGCCGCTCCAAGGACGCGCTGC CGCGCGGTGGCTGCGGACGAGCGCCCCGCCGACCCCGCGTTCCCCGAGCGCCAGAACCGC GGGATTTCCGGGGCGGTGGAGAGGCCGGAGGCGGACGTGGTTGTGATAGGCAGCGGGCTC GGCGGGCTGTGCTGCGCCGGCCTCCTGGCGAGGTACGGCCAGGACGTGCTGGTGCTCGAG AGCCATGACCGCCCGGGAGGCGCCGCGCACTCGTTCGATATCAAGGGATTCAACTTCGAT TCAGGGCCATCCTTGTTCTCCGGATTCCAGTCCAGAGGCCCCCAGGCAAATCCACTTGCT CAGGTCCTTGATGCATTAGGCGAATCAGTCCCTTGTGCGTCTTATGACTCTTGGATGGTT TATGTACCTGAAGGACAATTCCTCTCACGGATAGGACCAACTGAATTCCTCAAGGACCTT GAGATGTTTGTTGGTGTTGACGCTGTCCAGGAGTGGAAAAAACTTCTTGATGCAGTTATT CCTATGTCTGCAGCTGCAATGGCTTTGCCTCCGCTTTCCATTCGAGGTGATCTGGGCATT ATATCTACAGCTGTTGGTAGATACACTCCTTCGTTGTTGAAATCATTCATACAAATGGGA CCGCAAGGAGCTCTGGGCGCTACGAAACTTCTACGTCCATTCAAAGAAATTGTTGATTCG CTGGAGCTGAAAAATCCATTTGTTCGTAACTGGATCGATCTTCTGTGCTTTCTACTTGCT GGAGTTAAATCTGATGGTGCTCTTTCTGCAGAAATGGTTTATATGTTTGCAGAATGGTAC AAACCAGGATGCTTGCTTGAGTACCCTCTGGGTGGAACTGGAGCAATAATAGATGCCCTT GTGAGCGGTATTGAAAAATTTGGTGGCAGACTTGCTCTTCGTTCTCATGTTGAAAAGATC TTAATAGAGAATGGTCGAGCAGTTGGTGTCAAGCTACAAAGTGGACAAGTTATCCGTGCA AAGAAAGCGGTTGTTAGCAATGCATCTATGTGGGACACTTTGGATCTGTTACCACCCGAT GCTGTCCCAAAATCATATGAAGATAGAGTGAAAGCAACTCCACAATGTGAATCGTTTATG CATCTCCACCTTGGTTTTGATGCAGAGAATGCTAGAGAGGACCTTGGGATCCATCACATT GTGGTTGATGATTGGAACAAAGGAGTTGATGGTGAACAAAATGTTGTTTTGATATCCGTT CCCAGTGTTCTTAGCAAGGACCTGGCACCGCCCGGAAAGCACATTCTTCATGCATATACT CCAGGGACAGAACCTTTCAGTTTGTGGGAGGGACTGGACAGGAAAAGTGCAGAATATCGA AGACTGAAGGAAGAACGTTCTGAGGTGATGTGGAAAGCTGTGGAGCTTGCTCTCGGCCCA AAATTTAGCCGCGAAAAATGCGACGTGAAATTGGTCGGGACACCGCTAACGCACAGGAGA TTTCTCCGAAGGAACAGGGGAACCTATGGTCCAGCCATAAAAGCCGGAGAAGCCACTTTC CCTGGGCAAGCAACACCGATCCCCCAGCTCTTTTGCTGCGGTGACTCGACCTTTCCAGGG ATCGGAGTGCCGGCAGTTGCGGCCAGCGGCGCGATTGTGGCGAACACGCTGGTTCCGGTG TCGCAGCATTCAGAGCTCCTTGACGCTGTTGGAATCTGA

Peptide Sequence

PEP ID	Zm00001d012868_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:5:1369611:1375366:1 gene:Zm00001d012868 transcript:Zm00001d012868_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase3 description:carotene isomerase3
Sequence	MAASALASRALRPPHGRHPPAPSPRPRPRSATAAAPRTRCRAVAADERPADPAFPERQNR GISGAVERPEADVVVIGSGLGGLCCAGLLARYGQDVLVLESHDRPGGAAHSFDIKGFNFD SGPSLFSGFQSRGPQANPLAQVLDALGESVPCASYDSWMVYVPEGQFLSRIGPTEFLKDL EMFVGVDAVQEWKKLLDAVIPMSAAAMALPPLSIRGDLGIISTAVGRYTPSLLKSFIQMG PQGALGATKLLRPFKEIVDSLELKNPFVRNWIDLLCFLLAGVKSDGALSAEMVYMFAEWY KPGCLLEYPLGGTGAIIDALVSGIEKFGGRLALRSHVEKILIENGRAVGVKLQSGQVIRA KKAVVSNASMWDTLDLLPPDAVPKSYEDRVKATPQCESFMHLHLGFDAENAREDLGIHHI VVDDWNKGVDGEQNVVLISVPSVLSKDLAPPGKHILHAYTPGTEPFSLWEGLDRKSAEYR RLKEERSEVMWKAVELALGPKFSREKCDVKLVGTPLTHRRFLRRNRGTYGPAIKAGEATF PGQATPIPQLFCCGDSTFPGIGVPAVAASGAIVANTLVPVSQHSELLDAVGI

Transcript Sequence

Transcript ID	Zm00001d012868_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:1369611:1375366:1 gene:Zm00001d012868 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:carotene isomerase3 description:carotene isomerase3
Sequence	ACTCGCACTACTCGCCCTGCTCGTCGTCTCCCCAGTCCCCACCAGTTGCCTTCGCATCGC CGGACGCCGCTCGCCCTCCGCTTCTGCGACTACGTCCGAGATGGCCGCCTCGGCATTGGC CTCCCGCGCGCTGCGGCCTCCGCACGGCCGCCACCCTCCCGCCCCTTCGCCGCGTCCGCG TCCGCGCTCGGCAACCGCCGCCGCTCCAAGGACGCGCTGCCGCGCGGTGGCTGCGGACGA GCGCCCCGCCGACCCCGCGTTCCCCGAGCGCCAGAACCGCGGGATTTCCGGGGCGGTGGA GAGGCCGGAGGCGGACGTGGTTGTGATAGGCAGCGGGCTCGGCGGGCTGTGCTGCGCCGG CCTCCTGGCGAGGTACGGCCAGGACGTGCTGGTGCTCGAGAGCCATGACCGCCCGGGAGG CGCCGCGCACTCGTTCGATATCAAGGGATTCAACTTCGATTCAGGGCCATCCTTGTTCTC CGGATTCCAGTCCAGAGGCCCCCAGGCAAATCCACTTGCTCAGGTCCTTGATGCATTAGG CGAATCAGTCCCTTGTGCGTCTTATGACTCTTGGATGGTTTATGTACCTGAAGGACAATT CCTCTCACGGATAGGACCAACTGAATTCCTCAAGGACCTTGAGATGTTTGTTGGTGTTGA CGCTGTCCAGGAGTGGAAAAAACTTCTTGATGCAGTTATTCCTATGTCTGCAGCTGCAAT GGCTTTGCCTCCGCTTTCCATTCGAGGTGATCTGGGCATTATATCTACAGCTGTTGGTAG ATACACTCCTTCGTTGTTGAAATCATTCATACAAATGGGACCGCAAGGAGCTCTGGGCGC TACGAAACTTCTACGTCCATTCAAAGAAATTGTTGATTCGCTGGAGCTGAAAAATCCATT TGTTCGTAACTGGATCGATCTTCTGTGCTTTCTACTTGCTGGAGTTAAATCTGATGGTGC TCTTTCTGCAGAAATGGTTTATATGTTTGCAGAATGGTACAAACCAGGATGCTTGCTTGA GTACCCTCTGGGTGGAACTGGAGCAATAATAGATGCCCTTGTGAGCGGTATTGAAAAATT TGGTGGCAGACTTGCTCTTCGTTCTCATGTTGAAAAGATCTTAATAGAGAATGGTCGAGC AGTTGGTGTCAAGCTACAAAGTGGACAAGTTATCCGTGCAAAGAAAGCGGTTGTTAGCAA TGCATCTATGTGGGACACTTTGGATCTGTTACCACCCGATGCTGTCCCAAAATCATATGA AGATAGAGTGAAAGCAACTCCACAATGTGAATCGTTTATGCATCTCCACCTTGGTTTTGA TGCAGAGAATGCTAGAGAGGACCTTGGGATCCATCACATTGTGGTTGATGATTGGAACAA AGGAGTTGATGGTGAACAAAATGTTGTTTTGATATCCGTTCCCAGTGTTCTTAGCAAGGA CCTGGCACCGCCCGGAAAGCACATTCTTCATGCATATACTCCAGGGACAGAACCTTTCAG TTTGTGGGAGGGACTGGACAGGAAAAGTGCAGAATATCGAAGACTGAAGGAAGAACGTTC TGAGGTGATGTGGAAAGCTGTGGAGCTTGCTCTCGGCCCAAAATTTAGCCGCGAAAAATG CGACGTGAAATTGGTCGGGACACCGCTAACGCACAGGAGATTTCTCCGAAGGAACAGGGG AACCTATGGTCCAGCCATAAAAGCCGGAGAAGCCACTTTCCCTGGGCAAGCAACACCGAT CCCCCAGCTCTTTTGCTGCGGTGACTCGACCTTTCCAGGGATCGGAGTGCCGGCAGTTGC GGCCAGCGGCGCGATTGTGGCGAACACGCTGGTTCCGGTGTCGCAGCATTCAGAGCTCCT TGACGCTGTTGGAATCTGAGTGGCAGATACGTCCGTCGGTCCTGAACGATAATCAAAGAT TTTCCCACTGCTGTTGGAAAAAGATCGTATGGCTGAATGGAGAAGAAGACGACGACGACG ACCGATACAGTAGAGTTTTCTAGTCAGAACGGAGACTGGGAAAATATGTTGTACAGTATA TTATTTACTACGACTGCATGAAGCTTGTGCTGCTTCTGACAAATTGGTCGCCTCGTTCGC CTGCATGCTCCTTGTATTGTTCTACCGAAAGCTCTGTGGCGCATGCAGGCCTTTTGTCGG ACATTTTTTTTTTCTGGTATACGGAGGAAGGACCATGTGCTTGTTTGTACAACTCTAGTC GCAGTTTGC