Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d012863_T010
CDS Infomation	cds chromosome:B73_RefGen_v4:5:1291990:1298797:-1 gene:Zm00001d012863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative ion channel protein CASTOR
Sequence	ATGCCCCTCGACCCCGACTCCTCGTCGCCGCCGCCGCCACACCGCGACTGGTTCTTCCCG CCGGCGCCGCCGTTCCTCGCCTCCTCCAGGTCCCGGACCCCCAGTGCGCCCTTCCCCTCC ACCTACCGCTCCTCCAAGCCCTACTCAGCCTACCCCCTCGCCGACCGCCGACCGCCTCCT ACCCCACGCTCCCGCTCCCGCTCTCCGCACCCACCGCCGGAGCAGCAGCAGAAGACGCCG ACGCCGCCTACTCCTACGTCCGCGCCGCGCCGCCGTGACCCTCGGTACGCCGGCGTCCGC CGCGAAGATGCCCGTACGGCTGCCTCCGAGCAAGCGGCGGCCCCGATGGCCGCGCCAGTG CACGGGAGGAAGCCCGCAGCGTCGGCGATCGCTCCACGGTGGTCGGGGGTGCTCTCCGTG GCGGTTATTTTACTGTGCCTGGCCTCCCTTCTCCGCAGGAACTTCTCTTTGCACGACCAG GTTTACCTTCTGCAGGAGCAGCTGGCTGTAGCTACTGCAAAACTTCAGTCCTGCACTGTA GATTCTTCATTGAATACAAGCATCATTAATCTGTTCTATCAGGATGCTGCTAACAGTACC ACGCAGAGCAGAAGCCTTAAGAACCTTTCCTTGCTTATCTCGCTTTCGGTATTATACGCA CCACTCCTCATTCTCAAGTACGTGGACCTTGTGTCAAAGATAAGGAGGTCACGTGACTCT GAACAAGTTCCAATAAACAAGCGGTTCGCATACAGGGTCGATATATTTTTGTCACTTCAT CCGTATGCTAAACCATTGGTCCTACTTGTTGCTACGTTGTTACTAATTGCTCTTGGTGGA CTGGCTCTGTATGGTGTGACGGATGATAGCTTATCTGATTGTCTTTGGCTGTCCTGGACC TTCGTCGCTGACTCAGGGAACCATGCCAATGCTGTGGGTCTTGGACCCAAGCTGGTTTCA GTTTCAATTAGTATTGGTGGAATGTTGGTTTTTGCTATGATGCTTGGTCTTGTCACTGAT TCAATCTCTGAGAAGTTTGATTCTTTGAGGAAAGGAAGAAGTGAAGTCATAGAACAGAGC CACACTCTAATTCTTGGGTGGAGTGATAAATTGGGATCTTTGCTGAACCAAATTGCCATT GCTAATGAAAGCTTGAGAGGTGGGACCATTGTAGTGATGGCTGAGAGAGACAAAGAAGAA ATGGAAGCAGATATTGCTAAAATGGAGTTTGACATGAAAGGAACAGCTGTAATATGTAGA AGTGGAAGCCCTTTGATACTTGCTGATTTGAAAAAGGTCTCAGTTTCAAAGGCGCGGGCA ATTGTTGTTTTAGCTGAAGAAGGAAATGCTGACCAGAGTGATGCACGAGCACTGCGAACA GTCCTGAGTTTAACTGGAGTTAAAGAGGGACTAAGTGGTCACATAGTAGTGGAGCTTAGT GATCTTGACAATGAAGTTCTAGTCAAACTTGTTGGTGGAGATCTTGTGGAAACAGTTGTG GCACATGATGTGATTGGACGATTGATGATACAGTGTGCACGTCAACCAGGCCTTGCACAG ATATGGGAAGACATTCTTGGTTTTGAGAACTGTGAATTCTACATTAAAAGATGGCCTAAA TTGGATGGAATGCGATTTGAAGATGTGCTGATTAGCTTTCCTGAAGCTGTTCCATGTGGC ATAAAAGTGGCATCTTATGGGGGCAAGATTATTTTAAACCCTGATGATTGTTATGTTTTG CAAGAGGGTGATGAGGTGATAGTAATTGCAGAGGATGATGATACATATGCTCCAGCACCA TTGCCCAAGGTTAAAGAGGCTGTTTACATAGACATTGTTCATCCTGAAAGAAAGCCTCAG AAGATTCTTCTTTGTGGATGGCGACGGGATATAGATGATATGATTGCGGTAAGTTCTTAC TTTGAAGCTCCTAATTTCTTTTCTCTGTTAAATTGTGCAGGTTAG

Peptide Sequence

PEP ID	Zm00001d012863_P010
PEP Infomation	pep chromosome:B73_RefGen_v4:5:1291990:1298797:-1 gene:Zm00001d012863 transcript:Zm00001d012863_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative ion channel protein CASTOR
Sequence	MPLDPDSSSPPPPHRDWFFPPAPPFLASSRSRTPSAPFPSTYRSSKPYSAYPLADRRPPP TPRSRSRSPHPPPEQQQKTPTPPTPTSAPRRRDPRYAGVRREDARTAASEQAAAPMAAPV HGRKPAASAIAPRWSGVLSVAVILLCLASLLRRNFSLHDQVYLLQEQLAVATAKLQSCTV DSSLNTSIINLFYQDAANSTTQSRSLKNLSLLISLSVLYAPLLILKYVDLVSKIRRSRDS EQVPINKRFAYRVDIFLSLHPYAKPLVLLVATLLLIALGGLALYGVTDDSLSDCLWLSWT FVADSGNHANAVGLGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKGRSEVIEQS HTLILGWSDKLGSLLNQIAIANESLRGGTIVVMAERDKEEMEADIAKMEFDMKGTAVICR SGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLSGHIVVELS DLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPK LDGMRFEDVLISFPEAVPCGIKVASYGGKIILNPDDCYVLQEGDEVIVIAEDDDTYAPAP LPKVKEAVYIDIVHPERKPQKILLCGWRRDIDDMIAVSSYFEAPNFFSLLNCAG

Transcript Sequence

Transcript ID	Zm00001d012863_T010
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:1291990:1298797:-1 gene:Zm00001d012863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative ion channel protein CASTOR
Sequence	GCCGTAGCAACGTTCCCGGGAATTCCCCAAAATGCCCCTCGACCCCGACTCCTCGTCGCC GCCGCCGCCACACCGCGACTGGTTCTTCCCGCCGGCGCCGCCGTTCCTCGCCTCCTCCAG GTCCCGGACCCCCAGTGCGCCCTTCCCCTCCACCTACCGCTCCTCCAAGCCCTACTCAGC CTACCCCCTCGCCGACCGCCGACCGCCTCCTACCCCACGCTCCCGCTCCCGCTCTCCGCA CCCACCGCCGGAGCAGCAGCAGAAGACGCCGACGCCGCCTACTCCTACGTCCGCGCCGCG CCGCCGTGACCCTCGGTACGCCGGCGTCCGCCGCGAAGATGCCCGTACGGCTGCCTCCGA GCAAGCGGCGGCCCCGATGGCCGCGCCAGTGCACGGGAGGAAGCCCGCAGCGTCGGCGAT CGCTCCACGGTGGTCGGGGGTGCTCTCCGTGGCGGTTATTTTACTGTGCCTGGCCTCCCT TCTCCGCAGGAACTTCTCTTTGCACGACCAGGTTTACCTTCTGCAGGAGCAGCTGGCTGT AGCTACTGCAAAACTTCAGTCCTGCACTGTAGATTCTTCATTGAATACAAGCATCATTAA TCTGTTCTATCAGGATGCTGCTAACAGTACCACGCAGAGCAGAAGCCTTAAGAACCTTTC CTTGCTTATCTCGCTTTCGGTATTATACGCACCACTCCTCATTCTCAAGTACGTGGACCT TGTGTCAAAGATAAGGAGGTCACGTGACTCTGAACAAGTTCCAATAAACAAGCGGTTCGC ATACAGGGTCGATATATTTTTGTCACTTCATCCGTATGCTAAACCATTGGTCCTACTTGT TGCTACGTTGTTACTAATTGCTCTTGGTGGACTGGCTCTGTATGGTGTGACGGATGATAG CTTATCTGATTGTCTTTGGCTGTCCTGGACCTTCGTCGCTGACTCAGGGAACCATGCCAA TGCTGTGGGTCTTGGACCCAAGCTGGTTTCAGTTTCAATTAGTATTGGTGGAATGTTGGT TTTTGCTATGATGCTTGGTCTTGTCACTGATTCAATCTCTGAGAAGTTTGATTCTTTGAG GAAAGGAAGAAGTGAAGTCATAGAACAGAGCCACACTCTAATTCTTGGGTGGAGTGATAA ATTGGGATCTTTGCTGAACCAAATTGCCATTGCTAATGAAAGCTTGAGAGGTGGGACCAT TGTAGTGATGGCTGAGAGAGACAAAGAAGAAATGGAAGCAGATATTGCTAAAATGGAGTT TGACATGAAAGGAACAGCTGTAATATGTAGAAGTGGAAGCCCTTTGATACTTGCTGATTT GAAAAAGGTCTCAGTTTCAAAGGCGCGGGCAATTGTTGTTTTAGCTGAAGAAGGAAATGC TGACCAGAGTGATGCACGAGCACTGCGAACAGTCCTGAGTTTAACTGGAGTTAAAGAGGG ACTAAGTGGTCACATAGTAGTGGAGCTTAGTGATCTTGACAATGAAGTTCTAGTCAAACT TGTTGGTGGAGATCTTGTGGAAACAGTTGTGGCACATGATGTGATTGGACGATTGATGAT ACAGTGTGCACGTCAACCAGGCCTTGCACAGATATGGGAAGACATTCTTGGTTTTGAGAA CTGTGAATTCTACATTAAAAGATGGCCTAAATTGGATGGAATGCGATTTGAAGATGTGCT GATTAGCTTTCCTGAAGCTGTTCCATGTGGCATAAAAGTGGCATCTTATGGGGGCAAGAT TATTTTAAACCCTGATGATTGTTATGTTTTGCAAGAGGGTGATGAGGTGATAGTAATTGC AGAGGATGATGATACATATGCTCCAGCACCATTGCCCAAGGTTAAAGAGGCTGTTTACAT AGACATTGTTCATCCTGAAAGAAAGCCTCAGAAGATTCTTCTTTGTGGATGGCGACGGGA TATAGATGATATGATTGCGGTAAGTTCTTACTTTGAAGCTCCTAATTTCTTTTCTCTGTT AAATTGTGCAGGTTAGGAGAGGGTATCTGCCTAAAGATTTTGTTGTTCCAAAGTCTCCAG AAAGAATATTGTTTTGTGGTTGGCGCCGTGATATAGAAGATATGATAATGGTAACTTGAT GGCAGATCTAAACTGAGTTCATTTGCATGTAATGGAGACATTTGTGGCAAAGGGATTTGG TGGCAGAACTTACCTGTGCCAATGCTTCTTAATATATAGTATAGTATTTATTCCTGTTTT GAATTTGATTATGTTTAATTAATATCACAGCAGCGATGTTGATGCCTTCATTTGTTTTGG TTGAGAACATGTTTTAAACATTGGTTGTTGATTTCCAGGTACTTGATGCTTTCCTTGCGC CAGGATCAGAGTTGTGGATGTTTAATGACGTCCCTGAGGTTGACAGAGAAAGAAAGCTAA TTGATGGAGGTTTGGACTTCAGTCGCCTCGATAATATTACTTTGGTGCATCGTGAGGGAA ATGCTGTTATTCGCCGTCACTTGGAGAGCCTTCCTTTAGAATCATTCGATTCTATCCTGA TTTTGGCAGATGAATCTGTAGAAGATTCAGCAATCCAAGCTGACTCAAGGTCACTTGCAA CTTTGCTGCTGATAAGAGATATTCAGGCAAAACGTCTTCCATGCAAGGAATCATTGATTT CACATGTTCCCCGAGGGACCTTTTCTGAAGGTTCTTGGATAGGGGAGATGCAACAAGCAT CTGATAAATCTGTCATAATCAGTGAAATTTTGGACCCCAGGACAAAAAATTTGTTGTCAG TGTCAAAAATTAGTGACTACGTTCTTTCAAATGAATTAGTGAGCATGGCATTGGCAATGG TCGCAGAAGATCGGCAGATAAATAATGTCTTGGAGGAGCTCTTCGCTGAACAAGGAAATG AAATGCAAATACGACCTTCTGATATGTACCTTAGAGAAGAAGAGGAATTAAATTTCTTTG AGGTCATTCTGCGAGCTAGGCAGAGGAAAGAGATTGTCATTGGGTACCGTCTTGAGGCAG CTGAGCGTGCCATAATCAATCCAATAGACAAAGTTTCAAGGCGAAGGTGGTCACCCAAGG ATGTTTTTGTTGTTATATCCGAGAAAGAATGAGGTTTATCAGATCACAGTTGACACAAAA GCAAGCTCCTGACCAGTGACCACACCTAATGAAGAACAGGCAGCTGCGCCGCAGCACACA CACACACACCGACCAGCGCAGAGAGCTATTTGATTCAGATGCGCATTTGGCTGATTCAGA TGCGCATTTGGCAGAAGGCAATCGCTGAGCGCGAAGGAGTAAAAGCATGATCAGATATTC AGATCTTGGATCAGTCTAGACTGACACCTTAGGTCGCCCTTTACAAATATGACTTAAAAA GGATGTGAACAGAGTAGTACAGCACATGCTTTGGAAGTTTGGATATTCTTGTCCGTGTAA CTTCCCACATGAACAACGAGCAAAGCATCGCCTGCATGCATCAATTAATGGCTTAAAGCT ATTGAGTGCTGATACTGAGCAGTTTTCCAGTGAGCCTGTTACACCCTCCCATAGAGCGTA GACGACAGCGATAGTTCAGCATTCTGTACATTGCATAGGCGCATTCTGTTGCCAGTCCAT GTAAACAACATGAGATGTCGGCCAGTCCATGTAAATATGTAATCTGGAAGATCATCTGTA GGTACTGTTGCGGTGTTGGATCTTGTGAAGAATGCAGAGAGCAATGCCGAAGCGTGTCAC CTTGCCTCATTGTACTTGAGCAGATATATATTATG