Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012822_T025
CDS Infomation

cds chromosome:B73_RefGen_v4:5:920683:924471:1 gene:Zm00001d012822 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRF-like 10
Sequence

ATGGCAGATGTAGTCAATGAAAGTGAAACAGGAAATCTCCAAAAGGATCCACCTGCACCA
ACTTTTATTTTTCACCAACCGTGTATGCCTGAAAGCAGGTCTTACGTCCCTCCGCAAGAA
GATACTATAGATGCTGTTGGTCTAGGCGCTAGGTCCTCAGAAAGGAGTCCTATTGTGGAG
GGGAACATGTCCGTTGGATCTGTGCTTGCTTCAGATGGCTGTGATGTACCTTTGCAGGGA
AGCATTACTGAGCCCTTTTTCCAGCAGGATAAACATGACCATACTGTTATAGTTGGACCA
AAATCTTGTAAGCGAAAATCTCCAATTCCATCTTACTGTGCTCATGGAGATGGGGCAGAT
GGTGGTGGCTCCAGCAATCAGTCATCTAAGGTTTCCATTCGTGAAGGACCTAGCACTCAT
GCCACAGTAACTTCAGGTTTTGACAGAATCAGCGATGTCTTACCAACAGATGCACCTGAA
TCTGAGCATTTGCCTGAGTGCATAACTGCACAGGATACAACCATTTCACAGCCTGACAGC
AGGAAAGCTCATTTGAGTGCTCTGCAACAGGAAAGGGGTGAGAAAGTAACCCAAGATCTG
GAAGATATCTCTGCAAATATTGGGTCAGTGGAAAAGGACCATATTCATGGGGATCTGACT
TTGCCATCTGCCAGTGTTTTACTTTCTATAAGCTGCAATGGTGCTAATCAAGGAAGTAAA
TATGAAACCAACCTTCAACCAGGGACTGCTACAGAGGATATGATGGCTTTCGAAGAGCAG
AATGCAGACAAGTCTCACTTAGAAGTCAGTGGTATCAACAAGGCTAATCAAGCTCTGCAT
GATGATGGCGGCGTCATGAAAAATAATACAGTACATGGTGGGTTGATTGTGCAGACTGCT
CCAGTGTCTCAAAATTGCAATGTAACCTTACATGATAAAACTTCAGAGCAGGAAAATGAA
AAGAACATTCAAAAAGATAATTGCCATACTTATGTTCCAGGCTCTTCTCAGGATAGGGGT
GGAGAAAGTGCAAAGAAAACAACAAATGAACTAAAGTCTGGGGACATTTCTTCAAAAATA
TGTGTTCATTTCAATGTTCAAGACATCAATGATACTCTGGAGGACTTGTCTCAACAAGGT
TTGTGCATAAAATGTGGTGAAGGTGGTCAGTTGTTGGAATGCAATGGCTGTTTTTTAGCC
GCCCATAGCAGCTGTTTTGGTTCATCGGCGACATTTGAAGGAACCAATTTTTTCTACTGC
CCGGTATGCTTGTATAAGAAAGCCACTGAAGCATATAAAAAGGCAAAGAAAACATATTGT
GAAACTAGGAAGAACCTTGTTGCTTTCCTTGGCACAGCACAAGCCACCAATCAACCTGAC
AAACAACTAAATGGAGCTCAGCCAGGAGCTGCCAACAGAGATGAAGAGCCTCATGATGAG
CAACATTCTAAAGGGTGTGGCGCATCAAAAGGGGCCCATGAAAATGAAGTATACAATCTT
GCTCATCAGGATGAAGAGCATCATCAGCAGAGGAAGAAGCAGAAAATAAATGCTATAGTG
CTCCAGAATAACAATAAAACACCAGTTAAGGATCCAGAGAAAAAGCAGCAAGCGGTCAAC
GAAGAAGCTCGCAAAGAAGGTGGTAATGACAACTCATCTCATGAAACAGGAGCTTCATCT
CCGAGAAGATGTGATCCTCCTTCGAATCAGGACGTTGAGGCTGACCAGGACGATAGCCTT
ACAACTTCTAATCAATCTGGTGGTTCTGATGAAATAGAAGCTACATCTTCTAATGACTCT
GCCAAGCAATCATCACCCCCTTGGCGTGGTATGGGACACAACAAAAAAGGATTGCACGAA
AAGGAGCCAGCTGTATCAAGTAAATCTGGAAAAGGTATTGGGAAACAGGATCAACATATG
CATACTTCACGAAGGAAAAAAAAAATGCACACCTGCAAAAGCGCTAGTAAGTCAGGGTGC
AGTTACAGTACAACTTCTTTCCTTTAA

Peptide Sequence

PEP ID

Zm00001d012822_P025
PEP Infomation

pep chromosome:B73_RefGen_v4:5:920683:924471:1 gene:Zm00001d012822 transcript:Zm00001d012822_T025 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRF-like 10
Sequence

MADVVNESETGNLQKDPPAPTFIFHQPCMPESRSYVPPQEDTIDAVGLGARSSERSPIVE
GNMSVGSVLASDGCDVPLQGSITEPFFQQDKHDHTVIVGPKSCKRKSPIPSYCAHGDGAD
GGGSSNQSSKVSIREGPSTHATVTSGFDRISDVLPTDAPESEHLPECITAQDTTISQPDS
RKAHLSALQQERGEKVTQDLEDISANIGSVEKDHIHGDLTLPSASVLLSISCNGANQGSK
YETNLQPGTATEDMMAFEEQNADKSHLEVSGINKANQALHDDGGVMKNNTVHGGLIVQTA
PVSQNCNVTLHDKTSEQENEKNIQKDNCHTYVPGSSQDRGGESAKKTTNELKSGDISSKI
CVHFNVQDINDTLEDLSQQGLCIKCGEGGQLLECNGCFLAAHSSCFGSSATFEGTNFFYC
PVCLYKKATEAYKKAKKTYCETRKNLVAFLGTAQATNQPDKQLNGAQPGAANRDEEPHDE
QHSKGCGASKGAHENEVYNLAHQDEEHHQQRKKQKINAIVLQNNNKTPVKDPEKKQQAVN
EEARKEGGNDNSSHETGASSPRRCDPPSNQDVEADQDDSLTTSNQSGGSDEIEATSSNDS
AKQSSPPWRGMGHNKKGLHEKEPAVSSKSGKGIGKQDQHMHTSRRKKKMHTCKSASKSGC
SYSTTSFL

Transcript Sequence

Transcript ID

Zm00001d012822_T025
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:920683:924471:1 gene:Zm00001d012822 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRF-like 10
Sequence

ATGGCACTGAACAATGTGTCAATGATCAGTCACTGCGCAGCAGCCACGGATGTGTAAATA
TAGAGAAGCCTGTGTTCCATACAGACAATGCTGGGGTTCAGCAAGAGACCATGGCAGATG
TAGTCAATGAAAGTGAAACAGGAAATCTCCAAAAGGATCCACCTGCACCAACTTTTATTT
TTCACCAACCGTGTATGCCTGAAAGCAGGTCTTACGTCCCTCCGCAAGAAGATACTATAG
ATGCTGTTGGTCTAGGCGCTAGGTCCTCAGAAAGGAGTCCTATTGTGGAGGGGAACATGT
CCGTTGGATCTGTGCTTGCTTCAGATGGCTGTGATGTACCTTTGCAGGGAAGCATTACTG
AGCCCTTTTTCCAGCAGGATAAACATGACCATACTGTTATAGTTGGACCAAAATCTTGTA
AGCGAAAATCTCCAATTCCATCTTACTGTGCTCATGGAGATGGGGCAGATGGTGGTGGCT
CCAGCAATCAGTCATCTAAGGTTTCCATTCGTGAAGGACCTAGCACTCATGCCACAGTAA
CTTCAGGTTTTGACAGAATCAGCGATGTCTTACCAACAGATGCACCTGAATCTGAGCATT
TGCCTGAGTGCATAACTGCACAGGATACAACCATTTCACAGCCTGACAGCAGGAAAGCTC
ATTTGAGTGCTCTGCAACAGGAAAGGGGTGAGAAAGTAACCCAAGATCTGGAAGATATCT
CTGCAAATATTGGGTCAGTGGAAAAGGACCATATTCATGGGGATCTGACTTTGCCATCTG
CCAGTGTTTTACTTTCTATAAGCTGCAATGGTGCTAATCAAGGAAGTAAATATGAAACCA
ACCTTCAACCAGGGACTGCTACAGAGGATATGATGGCTTTCGAAGAGCAGAATGCAGACA
AGTCTCACTTAGAAGTCAGTGGTATCAACAAGGCTAATCAAGCTCTGCATGATGATGGCG
GCGTCATGAAAAATAATACAGTACATGGTGGGTTGATTGTGCAGACTGCTCCAGTGTCTC
AAAATTGCAATGTAACCTTACATGATAAAACTTCAGAGCAGGAAAATGAAAAGAACATTC
AAAAAGATAATTGCCATACTTATGTTCCAGGCTCTTCTCAGGATAGGGGTGGAGAAAGTG
CAAAGAAAACAACAAATGAACTAAAGTCTGGGGACATTTCTTCAAAAATATGTGTTCATT
TCAATGTTCAAGACATCAATGATACTCTGGAGGACTTGTCTCAACAAGGTTTGTGCATAA
AATGTGGTGAAGGTGGTCAGTTGTTGGAATGCAATGGCTGTTTTTTAGCCGCCCATAGCA
GCTGTTTTGGTTCATCGGCGACATTTGAAGGAACCAATTTTTTCTACTGCCCGGTATGCT
TGTATAAGAAAGCCACTGAAGCATATAAAAAGGCAAAGAAAACATATTGTGAAACTAGGA
AGAACCTTGTTGCTTTCCTTGGCACAGCACAAGCCACCAATCAACCTGACAAACAACTAA
ATGGAGCTCAGCCAGGAGCTGCCAACAGAGATGAAGAGCCTCATGATGAGCAACATTCTA
AAGGGTGTGGCGCATCAAAAGGGGCCCATGAAAATGAAGTATACAATCTTGCTCATCAGG
ATGAAGAGCATCATCAGCAGAGGAAGAAGCAGAAAATAAATGCTATAGTGCTCCAGAATA
ACAATAAAACACCAGTTAAGGATCCAGAGAAAAAGCAGCAAGCGGTCAACGAAGAAGCTC
GCAAAGAAGGTGGTAATGACAACTCATCTCATGAAACAGGAGCTTCATCTCCGAGAAGAT
GTGATCCTCCTTCGAATCAGGACGTTGAGGCTGACCAGGACGATAGCCTTACAACTTCTA
ATCAATCTGGTGGTTCTGATGAAATAGAAGCTACATCTTCTAATGACTCTGCCAAGCAAT
CATCACCCCCTTGGCGTGGTATGGGACACAACAAAAAAGGATTGCACGAAAAGGAGCCAG
CTGTATCAAGTAAATCTGGAAAAGGTATTGGGAAACAGGATCAACATATGCATACTTCAC
GAAGGAAAAAAAAAATGCACACCTGCAAAAGCGCTAGTAAGTCAGGGTGCAGTTACAGTA
CAACTTCTTTCCTTTAATTTAGTCTCAATTGCGTGTTTACACAGTAAAAAAGGTTAATCG
ATACAGCTTTGCTAGATTTACTAAACATGACTGAGGTCCTATTTTAGGATTGAATGATAT
CTGACTGTGTTGGTCTACATATGCAAATAATAAAGCTCTAAATGGATATTACTGGGGTGG
CATTCACATGTAGGCATGTAGCTTTCTTTTGTTCTTGCTCAAACAGTTTCCATTATTTTG
TTGGCTCAGTATCATGGATGACATGAGGCGATCAGTTTTGACACTATTCGAACTTGTAAG
GTCTTAGGCCTTTTGAGAAAACAGAGAACATTAACTATGCCATGATTCATGACAATGATT
TAATGGAAATCCGGTGTCTTTTTAAGGTCTTAGGCCTTTTGTCATGCATTGTTTTTCAAA
TTCAGATGAGATATTTTCAGTTTTTCACATACACATGGTTATATCTATGATATACTCCCT
CCGTCCCAAAATATAATTCGTTTTAGCTCTTGGTTTTTATGTTTATATTCAAGTGGATGA
AGATGAATCTAGACACATATGTAAAACACATATATTAACTATTGTATGAACCTATTAATT
AACTAAACGAATTTTAACTTGGGGCGGGGAGGGAGTATCAAATTAGATCAGACTTAATTG
CAATATGCCAATATAGTTGCTTAGCATTGGTGTTTTGTTATGAATTATGCAATGTTGAAC
ACGCACCGATGGTATTACCCTTCCGTGATAAAATGTCCTGCACATATAAAAAAGGAGACC
AGAGCATAAAAAACTGAGTCAACTGACTTCTTCAAATATTCACATTTTCCATCTATTATA
GGAAAGAAAATGTTCCATTTAATGCTATTCCAAGAACTGAGCACATGTCTTGCAGTTCCA
ATCCTGTTGCGCCACCTGGAAGACGCAAACAACTCTGTTGGACAGAAAAAGAAGTAGCTA
TTTTGAGGGTAATCATTCTTTGGATGTAAATTTTCATTGTTGAAACACTGTCTCTAGCGC
TGGCTTTTCCCAGGCCAGGTTTGTAGTGTGTAATTATGTCTCGCCTGGCCATGAGTATTA
TACTTTTTTACTGTGATGATCCAGGATGGGATGGCAAAATTCTCTCCACATAATAATGGT
AAAATACCATGGACCCAGATACTGCAATATGGCCGTCGTGTGTTTCACAAGACGCGCCTG
CCATGTGATTTGAGGGTCAAGTGGAGGAACATGGAGAGGAAGAAGTGGGCAGGCTACTGA
TGCTGGCAATCTTACACACAGACACACACACACACACAACTGTTGTGTGTCATACTGAAT
TACTAACCACACCTTCATTTGTTTGTGTCCATCTGCAGATCTGATGCCGTCGACATGGAA
CACTGATGTGGTACTAGAACATAGCGGAACACTGATATGGTACTAATAGCGAATGGAGGA
GGGTTTCTTCTAAAATAGTATTTTGATGCACAGGGTGGGCATCCTTTTGTGACTGGTTGT
GTCAACCTAGACCTACTATGCCCGTGAGAGAGATTGCTAAAGAGTCAACTTTCTTTTGGA
ACTGAACCCTGCACTCTAGATGATGATAACATCCGGTAGCTGTGTTTC