Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012815_T038
CDS Infomation

cds chromosome:B73_RefGen_v4:5:781842:787466:1 gene:Zm00001d012815 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein EXPORTIN 1A
Sequence

ATGTTGAAGAAACTAAGCAAGCAATTAAATGGAGAAGACTGGAGTTGGAATAACCTTAAT
ACTCTCTGTTGGGCTATTGGATCAATATCAGGGTCTATGGTAGAGGAGCAGGAGAATAGA
TTTCTGGTTATGGTTATTCGTGATTTGCTAAACCTATGTGAAATCACAAAGGGAAAGGAC
AATAAAGCTGTGATTGCAAGTAACATCATGTATGTTGTTGGTCAGTATCCAAGATTTCTC
AGGGCCCATTGGAAGTTTTTGAAAACTGTGGTCAACAAATTGTTTGAGTTCATGCATGAG
ATGCATCCTGGAGTTCAGGATATGGCATGTGATACCTTCCTGAAAATTGTTCAAAAATGC
AAGCGCAAGTTTGTGACACAACAGGTGGGCGAGAATGAACCATTTGTTTCTGAGCTTCTG
TCCAACCTTGCTACAACAATCGCGGATCTTGAGCCACATCAGATCCATACATTTTACGAA
TCAGTTGGCCATATGATTCAAGCTGAATCTGACAACACTAAGAGAGATGAATATCTCAAG
AGATTGATGAGCCTTCCTAATCAGAAGTGGGCAGAAATAATTGGACAGGCAAGCCAAAGC
ATTGATATCTTGAAGAACCAAGATGTTATCAGATCAGTTCTCAACATCCTACAGACAAAC
ACAAGTGTTGCGAGCTCCCTTGGACCACACTTCTTCCCACAGATTTCTCTAATTTTCTTG
GACATGCTAACAGTCTACAGAATGTACAGTGAGCTTGTATCAAGCACGATCGCTGAAGGA
GGACCATTTGCCTCAAGGACATCATTTGTAAAACTATTGAGATCTGTCAAGAGGGAAACC
CTAAAGTTGATCGAGACTTTTGTGGACAAGGCAGAAGATTTACCGCACTTAGGAAAGCAG
TTTGTTCCACCAATGATGGATCCTGTCCTTGGTGATTATGCTAGAAATGTACCCGATGCA
AGGGAGTCTGAAGTTCTGTCTTTGTTTGCAACAATCATTAACAAGTACAAAGGGGAAATG
CTTGAGGATGTGCCTCGTATATTTGAGGCTGTTTTCCAGTGCACTCTTGAGATGATTACT
AAGAACTTTGAAGATTATCCTGAGCACCGCCTCAAATTTTTTTCTTTGCTCCGTGCAATT
GGCACCCATTGCTTCCAAGCATTAATCCAGCTTTCAAGCCAGCAATTGAAGCTTGTGATC
GATTCGATTAATTGGGCGTTCAGACATACCGAGAGAAATATCGCAGAGACTGGCCTTAGT
CTATTGTTGGAAATTTTGAAGAACTTTGAGGCTTCAGGATTCCAAAATCAATTCTACAAA
ACCTACTTTTTGACAATTGAGCAAGAGATTTTTGCAGTTCTCACAGACACATTCCACAAA
CCTGGTTTCAAGCTTCATGTTTTGGTGCTCCAACACTTATTTTATGTGGTTGATAGTCTA
ACTGAGCCTCTATGGGATTCTTCATCAGTACCATATCAATATACGGATAATGCCACGTTT
GTTCGAGATTACACCATAAAACTCTTAGGAACATCATTTCCTAACATGACTGTAGCTGAG
GTGACCAAGTTTGTGGATGGCCTTCTTAGTTCAAAACTTGATCTTCCGAGCTTCAAAAAC
CATATTAGAGATTTCCTGGTGCAGTCGAAGGAGTTCTCAGCTCAGGATAACAAGGATCTA
TACGCGGAAGAGGCTGCTGCCCAAAGAGAAAGGGAGCGCCAACGAATGCTTGCCATTCCG
GGGCTGATTGCCCCTAGCGAATTGCAAGACGAGATGGTAGATTCGTAG

Peptide Sequence

PEP ID

Zm00001d012815_P038
PEP Infomation

pep chromosome:B73_RefGen_v4:5:781842:787466:1 gene:Zm00001d012815 transcript:Zm00001d012815_T038 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein EXPORTIN 1A
Sequence

MLKKLSKQLNGEDWSWNNLNTLCWAIGSISGSMVEEQENRFLVMVIRDLLNLCEITKGKD
NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEMHPGVQDMACDTFLKIVQKC
KRKFVTQQVGENEPFVSELLSNLATTIADLEPHQIHTFYESVGHMIQAESDNTKRDEYLK
RLMSLPNQKWAEIIGQASQSIDILKNQDVIRSVLNILQTNTSVASSLGPHFFPQISLIFL
DMLTVYRMYSELVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQ
FVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMIT
KNFEDYPEHRLKFFSLLRAIGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLS
LLLEILKNFEASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFYVVDSL
TEPLWDSSSVPYQYTDNATFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKN
HIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPGLIAPSELQDEMVDS

Transcript Sequence

Transcript ID

Zm00001d012815_T038
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:781842:787466:1 gene:Zm00001d012815 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein EXPORTIN 1A
Sequence

CAGATGTTGAAGAAACTAAGCAAGCAATTAAATGGAGAAGACTGGAGTTGGAATAACCTT
AATACTCTCTGTTGGGCTATTGGATCAATATCAGGGTCTATGGTAGAGGAGCAGGAGAAT
AGATTTCTGGTTATGGTTATTCGTGATTTGCTAAACCTATGTGAAATCACAAAGGGAAAG
GACAATAAAGCTGTGATTGCAAGTAACATCATGTATGTTGTTGGTCAGTATCCAAGATTT
CTCAGGGCCCATTGGAAGTTTTTGAAAACTGTGGTCAACAAATTGTTTGAGTTCATGCAT
GAGATGCATCCTGGAGTTCAGGATATGGCATGTGATACCTTCCTGAAAATTGTTCAAAAA
TGCAAGCGCAAGTTTGTGACACAACAGGTGGGCGAGAATGAACCATTTGTTTCTGAGCTT
CTGTCCAACCTTGCTACAACAATCGCGGATCTTGAGCCACATCAGATCCATACATTTTAC
GAATCAGTTGGCCATATGATTCAAGCTGAATCTGACAACACTAAGAGAGATGAATATCTC
AAGAGATTGATGAGCCTTCCTAATCAGAAGTGGGCAGAAATAATTGGACAGGCAAGCCAA
AGCATTGATATCTTGAAGAACCAAGATGTTATCAGATCAGTTCTCAACATCCTACAGACA
AACACAAGTGTTGCGAGCTCCCTTGGACCACACTTCTTCCCACAGATTTCTCTAATTTTC
TTGGACATGCTAACAGTCTACAGAATGTACAGTGAGCTTGTATCAAGCACGATCGCTGAA
GGAGGACCATTTGCCTCAAGGACATCATTTGTAAAACTATTGAGATCTGTCAAGAGGGAA
ACCCTAAAGTTGATCGAGACTTTTGTGGACAAGGCAGAAGATTTACCGCACTTAGGAAAG
CAGTTTGTTCCACCAATGATGGATCCTGTCCTTGGTGATTATGCTAGAAATGTACCCGAT
GCAAGGGAGTCTGAAGTTCTGTCTTTGTTTGCAACAATCATTAACAAGTACAAAGGGGAA
ATGCTTGAGGATGTGCCTCGTATATTTGAGGCTGTTTTCCAGTGCACTCTTGAGATGATT
ACTAAGAACTTTGAAGATTATCCTGAGCACCGCCTCAAATTTTTTTCTTTGCTCCGTGCA
ATTGGCACCCATTGCTTCCAAGCATTAATCCAGCTTTCAAGCCAGCAATTGAAGCTTGTG
ATCGATTCGATTAATTGGGCGTTCAGACATACCGAGAGAAATATCGCAGAGACTGGCCTT
AGTCTATTGTTGGAAATTTTGAAGAACTTTGAGGCTTCAGGATTCCAAAATCAATTCTAC
AAAACCTACTTTTTGACAATTGAGCAAGAGATTTTTGCAGTTCTCACAGACACATTCCAC
AAACCTGGTTTCAAGCTTCATGTTTTGGTGCTCCAACACTTATTTTATGTGGTTGATAGT
CTAACTGAGCCTCTATGGGATTCTTCATCAGTACCATATCAATATACGGATAATGCCACG
TTTGTTCGAGATTACACCATAAAACTCTTAGGAACATCATTTCCTAACATGACTGTAGCT
GAGGTGACCAAGTTTGTGGATGGCCTTCTTAGTTCAAAACTTGATCTTCCGAGCTTCAAA
AACCATATTAGAGATTTCCTGGTGCAGTCGAAGGAGTTCTCAGCTCAGGATAACAAGGAT
CTATACGCGGAAGAGGCTGCTGCCCAAAGAGAAAGGGAGCGCCAACGAATGCTTGCCATT
CCGGGGCTGATTGCCCCTAGCGAATTGCAAGACGAGATGGTAGATTCGTAGTGTTCCTTG
TTTTGATTCTGCTTTCTCTAATGTAGCTTCCTGTTTGTTGGTCTGGCCTCGGGAGCCCTC
GTCTTTCAAGTGCGAGTTTTCTTCCAGGGTGGTGAAAGGTGGCTGCTGTAATTTTATTTT
TGGTTACCTCCACATGATGCTGATTCCAAGATTTGTGGTTGTAGACTGGGAATGGACTAG
TCAGTTTTGCCGCAGGGGAGGTTCCTGGAACCGCTGTTGGGTCTTCAGCAGCTGTGCTTG
CCTGGATGTGTTAACAGCGGCTCTTAACATTGATTTGCTGTCTCATCGACAAGCTGTGTA
TCGAGAAACTGTTCGGTATTTCTGCCAGCTGTGGAGGCACATT