Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d012708_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:8:179043670:179046018:1 gene:Zm00001d012708 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGAGGGTTCTCTTGGTCTCAATGTTTTGCTTGAGGGGCTACTGGTCGCCTTCACTAGCT
CCAGTGAGGGAAGGGCCTGTTCGACATCATATAAAGTTCAATTCTGTAGTGGTTTGTGGT
GCTAGGGGACCGAGACCGAGATATCCCCGTGTGTGGAAAACTCGTAAGAAAATTGGGACT
ATTTCCAAGTCGCAGAAGCTTGTCGAATGTATTAAAGGTCTGTCTAATGTAAAGGAGGAA
GTTTATGGGGCACTTGACTCATTTGTTGCATGGGAACTGGAGTTTCCCTTGATAGTAGTA
AAGAAGGCACTGAAGAAACTTGAGGACGAAAAGGAATGGAAACGAATAATTCAGGTCATT
AAATGGATGTTCAACAAAGGTCAAGGGAAGACAATGGGAAGCTATTACACCTTGTTGAAT
GCTTTGATCGAGGATGGACGGATTGAGGAAGCAGAAGAGTTATTTGGAATGGTGTTCTCA
CGATATATGGAGGGTTTGCCTCGTACATTTTTCATGAGAATGATTTCTTTCTATTACAGC
GTGGAAGCGTATGATAAGATGTTTGAGATTTTTGCTGATATGGAGGAACTAGGCGTAAGA
CCTGATGGTTCTATTATCAGGATGCTAGGTGATGTATTTCAGAAGTTAGAGATGATGGAC
AAATATGAAAAGTTAAAAAAGAAATACCCACCACCGAAATGGGATTATCGACACATCAAA
GGCAAGCGCATAAGAATCAGAGTTTATCCTGATAGCAACCCTGAAGTGGCGGCAAAAGGA
GACCCTGACACTGATGAGCTCGAAGAGTTAGAAAGCACACACCTTAATAACGAATTGGAT
GAAGCAGCAAGCTCAGGCCTCGACAGGAGTGTATTGGACGATGCAGCTTCTGGAGACCTT
GAATATATGTAG

Peptide Sequence

PEP ID

Zm00001d012708_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:8:179043670:179046018:1 gene:Zm00001d012708 transcript:Zm00001d012708_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MRVLLVSMFCLRGYWSPSLAPVREGPVRHHIKFNSVVVCGARGPRPRYPRVWKTRKKIGT
ISKSQKLVECIKGLSNVKEEVYGALDSFVAWELEFPLIVVKKALKKLEDEKEWKRIIQVI
KWMFNKGQGKTMGSYYTLLNALIEDGRIEEAEELFGMVFSRYMEGLPRTFFMRMISFYYS
VEAYDKMFEIFADMEELGVRPDGSIIRMLGDVFQKLEMMDKYEKLKKKYPPPKWDYRHIK
GKRIRIRVYPDSNPEVAAKGDPDTDELEELESTHLNNELDEAASSGLDRSVLDDAASGDL
EYM

Transcript Sequence

Transcript ID

Zm00001d012708_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:8:179043670:179046018:1 gene:Zm00001d012708 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

AGCGACGGTGCCGGCAGTCGATTACTCCACGCGGCGGAGGCGGCGGTAGCCCATCCTTTC
CCGTTTTCTGATCCAGTCCTACTGATACCGCGCACAGCACGCCTGCTCTATTAAAGGTAC
GGCGTGAAGATGAGGGTTCTCTTGGTCTCAATGTTTTGCTTGAGGGGCTACTGGTCGCCT
TCACTAGCTCCAGTGAGGGAAGGGCCTGTTCGACATCATATAAAGTTCAATTCTGTAGTG
GTTTGTGGTGCTAGGGGACCGAGACCGAGATATCCCCGTGTGTGGAAAACTCGTAAGAAA
ATTGGGACTATTTCCAAGTCGCAGAAGCTTGTCGAATGTATTAAAGGTCTGTCTAATGTA
AAGGAGGAAGTTTATGGGGCACTTGACTCATTTGTTGCATGGGAACTGGAGTTTCCCTTG
ATAGTAGTAAAGAAGGCACTGAAGAAACTTGAGGACGAAAAGGAATGGAAACGAATAATT
CAGGTCATTAAATGGATGTTCAACAAAGGTCAAGGGAAGACAATGGGAAGCTATTACACC
TTGTTGAATGCTTTGATCGAGGATGGACGGATTGAGGAAGCAGAAGAGTTATTTGGAATG
GTGTTCTCACGATATATGGAGGGTTTGCCTCGTACATTTTTCATGAGAATGATTTCTTTC
TATTACAGCGTGGAAGCGTATGATAAGATGTTTGAGATTTTTGCTGATATGGAGGAACTA
GGCGTAAGACCTGATGGTTCTATTATCAGGATGCTAGGTGATGTATTTCAGAAGTTAGAG
ATGATGGACAAATATGAAAAGTTAAAAAAGAAATACCCACCACCGAAATGGGATTATCGA
CACATCAAAGGCAAGCGCATAAGAATCAGAGTTTATCCTGATAGCAACCCTGAAGTGGCG
GCAAAAGGAGACCCTGACACTGATGAGCTCGAAGAGTTAGAAAGCACACACCTTAATAAC
GAATTGGATGAAGCAGCAAGCTCAGGCCTCGACAGGAGTGTATTGGACGATGCAGCTTCT
GGAGACCTTGAATATATGTAGGTCAGAGCTTCCCTTTGGTATTTTTTTTGTGCCTGCTTA
ACCAAAGCGGTCTAGAGCAAATTGAACCGGTAACATCCCAGAACCCATGTCGTCATACTT
CCAAGACATGGGCATCGCTATCTTCTGAAGTATTTTACTACCTAGAATGAGTAGAAACTA
CATGCCAGGCTTTGCCATCAGCAGTCTTTTCAAGACATCATGGTGGTTT